RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 GAS2L2Q8NHY3 880 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 NUDT12Q9BQG2 462 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 ADAMTS8Q9UP79 889 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 BRWD3Q6RI45 1802 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 MAPK8IP3Q9UPT6 1336 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 LOC100996750A0A140TA64 210 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 TRIM37O94972 964 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 CCNYL3P0C7X3 344 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 CTHP32929 405 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 MTHFSDQ2M296 383 aaKnown RBP6.67□□□□□ -1.34
CLIP1-217ENST00000543205 AKAP4Q5JQC9 854 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 CCDC24Q8N4L8 307 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 ACSBG1Q96GR2 724 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 PHACTR3Q96KR7 559 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 KRTAP4-6Q9BYQ5 205 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 STK17AQ9UEE5 414 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 CCER2I3L3R5 266 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 NR6A1Q15406 480 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 TMED8Q6PL24 325 aaPredicted RBP6.66□□□□□ -1.34
CLIP1-217ENST00000543205 CCDC146Q8IYE0 955 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 SYTL4Q96C24 671 aaPredicted RBP6.66□□□□□ -1.34
CLIP1-217ENST00000543205 NDUFB9Q9Y6M9 179 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 TAF7LQ5H9L4 462 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 TREML4Q6UXN2 200 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 FAM9BQ8IZU0 186 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 EPS8L1Q8TE68 723 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 PNISRQ8TF01 805 aaKnown RBP6.66□□□□□ -1.34
CLIP1-217ENST00000543205 RUNDC1Q96C34 613 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 DCAF5Q96JK2 942 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 DRC1Q96MC2 740 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 PLEKHF1Q96S99 279 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 TRIM34Q9BYJ4 488 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 MAP10Q9P2G4 905 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 TBC1D2BQ9UPU7 963 aa6.66□□□□□ -1.34
CLIP1-217ENST00000543205 EP400Q96L91 3159 aa6.65□□□□□ -1.34
CLIP1-217ENST00000543205 BCL9O00512 1426 aa6.65□□□□□ -1.34
CLIP1-217ENST00000543205 PKD1L3Q7Z443 1732 aa6.65□□□□□ -1.34
CLIP1-217ENST00000543205 GNAT3A8MTJ3 354 aa6.65□□□□□ -1.35
CLIP1-217ENST00000543205 F12P00748 615 aaPredicted RBP6.65□□□□□ -1.35
CLIP1-217ENST00000543205 MPRIPQ6WCQ1 1025 aa6.65□□□□□ -1.35
CLIP1-217ENST00000543205 KCNQ2O43526 872 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 APBA3O96018 575 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 CANXP27824 592 aaKnown RBP6.64□□□□□ -1.35
CLIP1-217ENST00000543205 GGCXP38435 758 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 ABL2P42684 1182 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 CABP4P57796 275 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 NOM1Q5C9Z4 860 aaKnown RBP6.64□□□□□ -1.35
CLIP1-217ENST00000543205 DEFB132Q7Z7B7 95 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 ADAMTS19Q8TE59 1207 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 RTF1Q92541 710 aaKnown RBP6.64□□□□□ -1.35
CLIP1-217ENST00000543205 FCF1Q9Y324 198 aaKnown RBP6.64□□□□□ -1.35
CLIP1-217ENST00000543205 MAP3K5Q99683 1374 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 ERVV-2B6SEH9 535 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 RNMTO43148 476 aaKnown RBP6.64□□□□□ -1.35
CLIP1-217ENST00000543205 TCF3P15923 654 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 RIPK4P57078 832 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 NFE2L2Q16236 605 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 PNMA1Q8ND90 353 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 TMOD3Q9NYL9 352 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 PDZRN3Q9UPQ7 1066 aa6.64□□□□□ -1.35
CLIP1-217ENST00000543205 LRP5O75197 1615 aa6.63□□□□□ -1.35
CLIP1-217ENST00000543205 SHANK3Q9BYB0 1731 aa6.63□□□□□ -1.35
CLIP1-217ENST00000543205 PPEF1O14829 653 aaPredicted RBP6.63□□□□□ -1.35
CLIP1-217ENST00000543205 HTATSF1O43719 755 aaKnown RBP6.63□□□□□ -1.35
CLIP1-217ENST00000543205 BAG6P46379 1132 aa6.63□□□□□ -1.35
CLIP1-217ENST00000543205 KCNH2Q12809 1159 aa6.63□□□□□ -1.35
CLIP1-217ENST00000543205 PTF1AQ7RTS3 328 aa6.63□□□□□ -1.35
CLIP1-217ENST00000543205 SREK1Q8WXA9 508 aaKnown RBP6.63□□□□□ -1.35
CLIP1-217ENST00000543205 LGR6Q9HBX8 967 aa6.63□□□□□ -1.35
CLIP1-217ENST00000543205 EVA1BQ9NVM1 165 aa6.63□□□□□ -1.35
CLIP1-217ENST00000543205 TMEM88BA6NKF7 163 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 ZNF16P17020 682 aaPredicted RBP6.62□□□□□ -1.35
CLIP1-217ENST00000543205 TMPOP42166 694 aaKnown RBP6.62□□□□□ -1.35
CLIP1-217ENST00000543205 IRX6P78412 446 aaPredicted RBP6.62□□□□□ -1.35
CLIP1-217ENST00000543205 LMOD3Q0VAK6 560 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 DNAJC14Q6Y2X3 702 aaPredicted RBP6.62□□□□□ -1.35
CLIP1-217ENST00000543205 WWC1Q8IX03 1113 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 NFATC2IPQ8NCF5 419 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 PIGBQ92521 554 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 VRTNQ9H8Y1 702 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 RRP7AQ9Y3A4 280 aaKnown RBP6.62□□□□□ -1.35
CLIP1-217ENST00000543205 KDM6AO15550 1401 aaPredicted RBP6.62□□□□□ -1.35
CLIP1-217ENST00000543205 APAF1O14727 1248 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 YY1P25490 414 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 TEFQ10587 303 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 PPP1R18Q6NYC8 613 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 MCM10Q7L590 875 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 ANKRD13AQ8IZ07 590 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 IL17REQ8NFR9 667 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 SLC52A2Q9HAB3 445 aa6.62□□□□□ -1.35
CLIP1-217ENST00000543205 PPP1R1BQ9UD71 204 aaPredicted RBP6.62□□□□□ -1.35
CLIP1-217ENST00000543205 RNF223E7ERA6 249 aa6.61□□□□□ -1.35
CLIP1-217ENST00000543205 DCTN1Q14203 1278 aa6.61□□□□□ -1.35
CLIP1-217ENST00000543205 SMARCC1Q92922 1105 aaPredicted RBP6.61□□□□□ -1.35
CLIP1-217ENST00000543205 PSMD1Q99460 953 aa6.61□□□□□ -1.35
CLIP1-217ENST00000543205 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.61□□□□□ -1.35
CLIP1-217ENST00000543205 PLSCR1O15162 318 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 UNC93B1Q9H1C4 597 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 FKBPLQ9UIM3 349 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 NHSQ6T4R5 1651 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms