RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 ZNF594Q96JF6 807 aaPredicted RBP11.64□□□□□ -0.55
DDX55-208ENST00000541259 CCDC136Q96JN2 1154 aa11.64□□□□□ -0.55
DDX55-208ENST00000541259 NLRP3Q96P20 1036 aa11.64□□□□□ -0.55
DDX55-208ENST00000541259 SEC31BQ9NQW1 1179 aa11.64□□□□□ -0.55
DDX55-208ENST00000541259 PA2G4Q9UQ80 394 aaKnown RBP11.64□□□□□ -0.55
DDX55-208ENST00000541259 HSP90B1P14625 803 aaKnown RBP11.63□□□□□ -0.55
DDX55-208ENST00000541259 ITGA6P23229 1130 aa11.63□□□□□ -0.55
DDX55-208ENST00000541259 POLD1P28340 1107 aa11.63□□□□□ -0.55
DDX55-208ENST00000541259 HDAC1Q13547 482 aaPredicted RBP11.63□□□□□ -0.55
DDX55-208ENST00000541259 CCDC152Q4G0S7 254 aa11.63□□□□□ -0.55
DDX55-208ENST00000541259 BRIP1Q9BX63 1249 aa11.63□□□□□ -0.55
DDX55-208ENST00000541259 RWDD1Q9H446 243 aaPredicted RBP11.63□□□□□ -0.55
DDX55-208ENST00000541259 KIAA1551Q9HCM1 1747 aa11.63□□□□□ -0.55
DDX55-208ENST00000541259 KLRG2A4D1S0 409 aaPredicted RBP11.62□□□□□ -0.55
DDX55-208ENST00000541259 PSEN1P49768 467 aa11.62□□□□□ -0.55
DDX55-208ENST00000541259 PTPN12Q05209 780 aaKnown RBP11.62□□□□□ -0.55
DDX55-208ENST00000541259 POTEHQ6S545 545 aa11.62□□□□□ -0.55
DDX55-208ENST00000541259 DLEC1Q9Y238 1755 aa11.62□□□□□ -0.55
DDX55-208ENST00000541259 C10orf71Q711Q0 1435 aa11.61□□□□□ -0.55
DDX55-208ENST00000541259 ANKRD18BA2A2Z9 1011 aa11.61□□□□□ -0.55
DDX55-208ENST00000541259 HMMRO75330 724 aa11.61□□□□□ -0.55
DDX55-208ENST00000541259 IFIT5Q13325 482 aaKnown RBP11.61□□□□□ -0.55
DDX55-208ENST00000541259 CCDC57Q2TAC2 916 aa11.61□□□□□ -0.55
DDX55-208ENST00000541259 CRY2Q49AN0 593 aa11.61□□□□□ -0.55
DDX55-208ENST00000541259 PAXIP1Q6ZW49 1069 aaPredicted RBP11.61□□□□□ -0.55
DDX55-208ENST00000541259 PUS3Q9BZE2 481 aaKnown RBP11.61□□□□□ -0.55
DDX55-208ENST00000541259 SIL1Q9H173 461 aa11.61□□□□□ -0.55
DDX55-208ENST00000541259 DCTPP1Q9H773 170 aa11.61□□□□□ -0.55
DDX55-208ENST00000541259 EXOC6BQ9Y2D4 811 aa11.61□□□□□ -0.55
DDX55-208ENST00000541259 A0A1B0GUL6 1792 aa11.61□□□□□ -0.55
DDX55-208ENST00000541259 KDM2BQ8NHM5 1336 aa11.6□□□□□ -0.55
DDX55-208ENST00000541259 SLX4Q8IY92 1834 aa11.6□□□□□ -0.55
DDX55-208ENST00000541259 RTL9Q8NET4 1388 aa11.6□□□□□ -0.55
DDX55-208ENST00000541259 APBB1O00213 710 aa11.6□□□□□ -0.55
DDX55-208ENST00000541259 SURF6O75683 361 aaKnown RBP11.6□□□□□ -0.55
DDX55-208ENST00000541259 CHRNA5P30532 468 aa11.6□□□□□ -0.55
DDX55-208ENST00000541259 PDE6BP35913 854 aa11.6□□□□□ -0.55
DDX55-208ENST00000541259 LRRC24Q50LG9 513 aa11.6□□□□□ -0.55
DDX55-208ENST00000541259 SLC51AQ86UW1 340 aa11.6□□□□□ -0.55
DDX55-208ENST00000541259 C2CD5Q86YS7 1000 aa11.6□□□□□ -0.55
DDX55-208ENST00000541259 CELF1Q92879 486 aaKnown RBP11.6□□□□□ -0.55
DDX55-208ENST00000541259 SPON1Q9HCB6 807 aa11.6□□□□□ -0.55
DDX55-208ENST00000541259 COPRSQ9NQ92 184 aa11.6□□□□□ -0.55
DDX55-208ENST00000541259 SRGNP10124 158 aa11.59□□□□□ -0.55
DDX55-208ENST00000541259 TAF7LQ5H9L4 462 aa11.59□□□□□ -0.55
DDX55-208ENST00000541259 DDX46Q7L014 1031 aaKnown RBP11.59□□□□□ -0.55
DDX55-208ENST00000541259 ATG9AQ7Z3C6 839 aa11.59□□□□□ -0.55
DDX55-208ENST00000541259 SPRYD3Q8NCJ5 442 aa11.59□□□□□ -0.55
DDX55-208ENST00000541259 RPGRQ92834 1020 aaKnown RBP11.59□□□□□ -0.55
DDX55-208ENST00000541259 RBM17Q96I25 401 aaKnown RBP11.59□□□□□ -0.55
DDX55-208ENST00000541259 NOP58Q9Y2X3 529 aaKnown RBP11.59□□□□□ -0.55
DDX55-208ENST00000541259 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.59□□□□□ -0.55
DDX55-208ENST00000541259 BRCA1P38398 1863 aaKnown RBP11.59□□□□□ -0.55
DDX55-208ENST00000541259 A0A0G2JLW4 131 aa11.58□□□□□ -0.56
DDX55-208ENST00000541259 H0YIN7 160 aa11.58□□□□□ -0.56
DDX55-208ENST00000541259 SMARCA5O60264 1052 aaPredicted RBP11.58□□□□□ -0.56
DDX55-208ENST00000541259 HOXA10P31260 410 aaPredicted RBP11.58□□□□□ -0.56
DDX55-208ENST00000541259 SMC5Q8IY18 1101 aa11.58□□□□□ -0.56
DDX55-208ENST00000541259 PPP1R1BQ9UD71 204 aaPredicted RBP11.58□□□□□ -0.56
DDX55-208ENST00000541259 LRP5O75197 1615 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 EYA2O00167 538 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 SASH1O94885 1247 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 NPR1P16066 1061 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 DPEP1P16444 411 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 RPS8P62241 208 aaKnown RBP11.57□□□□□ -0.56
DDX55-208ENST00000541259 G3BP1Q13283 466 aaKnown RBP eCLIP11.57□□□□□ -0.56
DDX55-208ENST00000541259 GRAPQ13588 217 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 LDHAL6AQ6ZMR3 332 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 CENPQQ7L2Z9 268 aaPredicted RBP11.57□□□□□ -0.56
DDX55-208ENST00000541259 SKAP1Q86WV1 359 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 ANKRD18AQ8IVF6 992 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 GRAPLQ8TC17 118 aaPredicted RBP11.57□□□□□ -0.56
DDX55-208ENST00000541259 ZNF622Q969S3 477 aaKnown RBP eCLIP11.57□□□□□ -0.561e-6■■□□□ 12.4
DDX55-208ENST00000541259 GCC1Q96CN9 775 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 MASTLQ96GX5 879 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 MS4A3Q96HJ5 214 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 CRAMP1Q96RY5 1269 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 CDC5LQ99459 802 aaKnown RBP11.57□□□□□ -0.56
DDX55-208ENST00000541259 RIPOR2Q9Y4F9 1068 aa11.57□□□□□ -0.56
DDX55-208ENST00000541259 KCNA3P22001 575 aa11.56□□□□□ -0.56
DDX55-208ENST00000541259 IGHMBP2P38935 993 aaKnown RBP11.56□□□□□ -0.56
DDX55-208ENST00000541259 CLCN6P51797 869 aa11.56□□□□□ -0.56
DDX55-208ENST00000541259 OS9Q13438 667 aaPredicted RBP11.56□□□□□ -0.56
DDX55-208ENST00000541259 ANKRD45Q5TZF3 282 aa11.56□□□□□ -0.56
DDX55-208ENST00000541259 RHPN1Q8TCX5 695 aa11.56□□□□□ -0.56
DDX55-208ENST00000541259 MPHOSPH8Q99549 860 aa11.56□□□□□ -0.56
DDX55-208ENST00000541259 BCL11AQ9H165 835 aa11.56□□□□□ -0.56
DDX55-208ENST00000541259 CNNM1Q9NRU3 951 aa11.56□□□□□ -0.56
DDX55-208ENST00000541259 PDZRN3Q9UPQ7 1066 aa11.56□□□□□ -0.56
DDX55-208ENST00000541259 CIAO1O76071 339 aa11.55□□□□□ -0.56
DDX55-208ENST00000541259 IL15P40933 162 aaPredicted RBP11.55□□□□□ -0.56
DDX55-208ENST00000541259 TFCP2Q12800 502 aa11.55□□□□□ -0.56
DDX55-208ENST00000541259 STYK1Q6J9G0 422 aa11.55□□□□□ -0.56
DDX55-208ENST00000541259 HELBQ8NG08 1087 aaPredicted RBP11.55□□□□□ -0.56
DDX55-208ENST00000541259 IL1RAPL2Q9NP60 686 aa11.55□□□□□ -0.56
DDX55-208ENST00000541259 BSDC1Q9NW68 430 aaPredicted RBP11.55□□□□□ -0.56
DDX55-208ENST00000541259 CD2APQ9Y5K6 639 aa11.55□□□□□ -0.56
DDX55-208ENST00000541259 LRRC37AA6NMS7 1700 aa11.55□□□□□ -0.56
DDX55-208ENST00000541259 WTIPA6NIX2 430 aaPredicted RBP11.54□□□□□ -0.56
DDX55-208ENST00000541259 RAB11FIP3O75154 756 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms