RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CDK19Q9BWU1 502 aa11□□□□□ -0.65
CLIP1-214ENST00000540539 CABP2Q9NPB3 220 aa11□□□□□ -0.65
CLIP1-214ENST00000540539 SPATS2LQ9NUQ6 558 aaKnown RBP11□□□□□ -0.65
CLIP1-214ENST00000540539 DDX19BQ9UMR2 479 aa11□□□□□ -0.65
CLIP1-214ENST00000540539 RPAP1Q9BWH6 1393 aaPredicted RBP11□□□□□ -0.65
CLIP1-214ENST00000540539 WASLO00401 505 aaPredicted RBP11□□□□□ -0.65
CLIP1-214ENST00000540539 BAG1Q99933 345 aaPredicted RBP11□□□□□ -0.65
CLIP1-214ENST00000540539 EPC1Q9H2F5 836 aa11□□□□□ -0.65
CLIP1-214ENST00000540539 ADGRB2O60241 1585 aa10.99□□□□□ -0.65
CLIP1-214ENST00000540539 NALCNQ8IZF0 1738 aa10.99□□□□□ -0.65
CLIP1-214ENST00000540539 CCZ1BP86790 482 aa10.99□□□□□ -0.65
CLIP1-214ENST00000540539 CCZ1P86791 482 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-214ENST00000540539 SNW1Q13573 536 aaKnown RBP10.99□□□□□ -0.65
CLIP1-214ENST00000540539 GORABQ5T7V8 394 aa10.99□□□□□ -0.65
CLIP1-214ENST00000540539 ARFGAP3Q9NP61 516 aa10.99□□□□□ -0.65
CLIP1-214ENST00000540539 CHMLP26374 656 aa10.99□□□□□ -0.65
CLIP1-214ENST00000540539 GNAI1P63096 354 aa10.99□□□□□ -0.65
CLIP1-214ENST00000540539 ARMC2Q8NEN0 867 aa10.99□□□□□ -0.65
CLIP1-214ENST00000540539 MICAL1Q8TDZ2 1067 aa10.99□□□□□ -0.65
CLIP1-214ENST00000540539 SYTL4Q96C24 671 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-214ENST00000540539 FAM107BQ9H098 131 aa10.99□□□□□ -0.65
CLIP1-214ENST00000540539 KDM4CQ9H3R0 1056 aa10.99□□□□□ -0.65
CLIP1-214ENST00000540539 TMEM94Q12767 1356 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 EXOC5O00471 708 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 NEMFO60524 1076 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 TRIM27P14373 513 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 MRPL12P52815 198 aaKnown RBP10.98□□□□□ -0.65
CLIP1-214ENST00000540539 ICA1Q05084 483 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 CUL4AQ13619 759 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 NUTM2GQ5VZR2 741 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 PARD3BQ8TEW8 1205 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 ZKSCAN4Q969J2 545 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-214ENST00000540539 CBX8Q9HC52 389 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 KCND1Q9NSA2 647 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 ZBTB40Q9NUA8 1239 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 ADGRL3Q9HAR2 1447 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 ECEL1O95672 775 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 GSPT1P15170 499 aaKnown RBP10.98□□□□□ -0.65
CLIP1-214ENST00000540539 PREPLQ4J6C6 727 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-214ENST00000540539 SRCIN1Q9C0H9 1055 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 ODF2LQ9ULJ1 636 aa10.98□□□□□ -0.65
CLIP1-214ENST00000540539 SNUPNO95149 360 aaKnown RBP10.97□□□□□ -0.65
CLIP1-214ENST00000540539 DDR1Q08345 913 aa10.97□□□□□ -0.65
CLIP1-214ENST00000540539 SNX1Q13596 522 aa10.97□□□□□ -0.65
CLIP1-214ENST00000540539 SF3A1Q15459 793 aaKnown RBP10.97□□□□□ -0.65
CLIP1-214ENST00000540539 SLC5A9Q2M3M2 681 aa10.97□□□□□ -0.65
CLIP1-214ENST00000540539 WDR33Q9C0J8 1336 aaKnown RBP10.97□□□□□ -0.65
CLIP1-214ENST00000540539 ERC2O15083 957 aa10.97□□□□□ -0.65
CLIP1-214ENST00000540539 TYRO3Q06418 890 aa10.97□□□□□ -0.65
CLIP1-214ENST00000540539 APOBRQ0VD83 1088 aa10.97□□□□□ -0.65
CLIP1-214ENST00000540539 RBBP5Q15291 538 aaKnown RBP10.97□□□□□ -0.65
CLIP1-214ENST00000540539 PDE11AQ9HCR9 933 aa10.97□□□□□ -0.65
CLIP1-214ENST00000540539 CD248Q9HCU0 757 aa10.97□□□□□ -0.65
CLIP1-214ENST00000540539 FAN1Q9Y2M0 1017 aa10.97□□□□□ -0.65
CLIP1-214ENST00000540539 MYOM1P52179 1685 aa10.96□□□□□ -0.65
CLIP1-214ENST00000540539 CCDC69A6NI79 296 aa10.96□□□□□ -0.65
CLIP1-214ENST00000540539 EFCAB8A8MWE9 144 aa10.96□□□□□ -0.65
CLIP1-214ENST00000540539 MAP2K7O14733 419 aa10.96□□□□□ -0.65
CLIP1-214ENST00000540539 SRGAP3O43295 1099 aa10.96□□□□□ -0.65
CLIP1-214ENST00000540539 CDC25BP30305 580 aa10.96□□□□□ -0.65
CLIP1-214ENST00000540539 EVCP57679 992 aa10.96□□□□□ -0.65
CLIP1-214ENST00000540539 ANKRD18AQ8IVF6 992 aa10.96□□□□□ -0.65
CLIP1-214ENST00000540539 WDR63Q8IWG1 891 aa10.96□□□□□ -0.65
CLIP1-214ENST00000540539 BICC1Q9H694 974 aaKnown RBP10.96□□□□□ -0.65
CLIP1-214ENST00000540539 KIF9Q9HAQ2 790 aa10.96□□□□□ -0.65
CLIP1-214ENST00000540539 ZNF232Q9UNY5 417 aa10.96□□□□□ -0.65
CLIP1-214ENST00000540539 XIRP1Q702N8 1843 aaKnown RBP10.96□□□□□ -0.65
CLIP1-214ENST00000540539 LRRC7Q96NW7 1537 aa10.96□□□□□ -0.65
CLIP1-214ENST00000540539 ATAD2Q6PL18 1390 aa10.96□□□□□ -0.65
CLIP1-214ENST00000540539 GCKP35557 465 aa10.96□□□□□ -0.66
CLIP1-214ENST00000540539 NFXL1Q6ZNB6 911 aa10.96□□□□□ -0.66
CLIP1-214ENST00000540539 CABS1Q96KC9 395 aa10.96□□□□□ -0.66
CLIP1-214ENST00000540539 SUDS3Q9H7L9 328 aaPredicted RBP10.96□□□□□ -0.66
CLIP1-214ENST00000540539 CDC42BPGQ6DT37 1551 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 NUTM2FA1L443 756 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 FIBPO43427 364 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 N4BP1O75113 896 aaKnown RBP10.95□□□□□ -0.66
CLIP1-214ENST00000540539 SKAP2O75563 359 aaPredicted RBP10.95□□□□□ -0.66
CLIP1-214ENST00000540539 RDXP35241 583 aaKnown RBP10.95□□□□□ -0.66
CLIP1-214ENST00000540539 DHX8Q14562 1220 aaKnown RBP10.95□□□□□ -0.66
CLIP1-214ENST00000540539 LONRF2Q1L5Z9 754 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 DRAXINQ8NBI3 349 aaPredicted RBP10.95□□□□□ -0.66
CLIP1-214ENST00000540539 CNNM3Q8NE01 707 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 TDRD7Q8NHU6 1098 aaKnown RBP10.95□□□□□ -0.66
CLIP1-214ENST00000540539 DDX11Q96FC9 970 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 CLIC6Q96NY7 704 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 PPFIA2O75334 1257 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 ABCD1P33897 745 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 ANO6Q4KMQ2 910 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 NUDT16Q96DE0 195 aaKnown RBP10.95□□□□□ -0.66
CLIP1-214ENST00000540539 INTS4Q96HW7 963 aaKnown RBP10.95□□□□□ -0.66
CLIP1-214ENST00000540539 PPP1R13BQ96KQ4 1090 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 CARD6Q9BX69 1037 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 SLC12A5Q9H2X9 1139 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 C19orf44Q9H6X5 657 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 ANAPC4Q9UJX5 808 aa10.95□□□□□ -0.66
CLIP1-214ENST00000540539 PRR36Q9H6K5 1346 aa10.94□□□□□ -0.66
CLIP1-214ENST00000540539 FRMD3A2A2Y4 597 aa10.94□□□□□ -0.66
CLIP1-214ENST00000540539 CHUKO15111 745 aa10.94□□□□□ -0.66
CLIP1-214ENST00000540539 NEK4P51957 841 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms