RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 USP27XA6NNY8 438 aa23.93■■□□□ 1.42
TMEM260-203ENST00000539559 C1orf141Q5JVX7 400 aa23.93■■□□□ 1.42
TMEM260-203ENST00000539559 LINS1Q8NG48 757 aa23.93■■□□□ 1.42
TMEM260-203ENST00000539559 SPATA31A3Q5VYP0 1347 aa23.92■■□□□ 1.42
TMEM260-203ENST00000539559 RBM43Q6ZSC3 357 aaKnown RBP23.92■■□□□ 1.42
TMEM260-203ENST00000539559 SLC39A6Q13433 755 aa23.92■■□□□ 1.42
TMEM260-203ENST00000539559 GTF3C6Q969F1 213 aa23.92■■□□□ 1.42
TMEM260-203ENST00000539559 DNAJC2Q99543 621 aaKnown RBP23.92■■□□□ 1.42
TMEM260-203ENST00000539559 XIRP1Q702N8 1843 aaKnown RBP23.92■■□□□ 1.42
TMEM260-203ENST00000539559 BRINP3Q76B58 766 aa23.91■■□□□ 1.42
TMEM260-203ENST00000539559 ZNF335Q9H4Z2 1342 aaPredicted RBP23.91■■□□□ 1.42
TMEM260-203ENST00000539559 RIC3Q7Z5B4 369 aa23.91■■□□□ 1.42
TMEM260-203ENST00000539559 CABLES1Q8TDN4 633 aa23.91■■□□□ 1.42
TMEM260-203ENST00000539559 NEK1Q96PY6 1258 aa23.91■■□□□ 1.42
TMEM260-203ENST00000539559 SNRKQ9NRH2 765 aa23.9■■□□□ 1.42
TMEM260-203ENST00000539559 NOL12Q9UGY1 213 aaKnown RBP eCLIP23.9■■□□□ 1.42
TMEM260-203ENST00000539559 USP16Q9Y5T5 823 aa23.9■■□□□ 1.42
TMEM260-203ENST00000539559 V9GYY5 206 aaPredicted RBP23.9■■□□□ 1.42
TMEM260-203ENST00000539559 CAMTA1Q9Y6Y1 1673 aa23.9■■□□□ 1.42
TMEM260-203ENST00000539559 UTP14CQ5TAP6 766 aaKnown RBP23.89■■□□□ 1.42
TMEM260-203ENST00000539559 DBNLQ9UJU6 430 aaKnown RBP23.89■■□□□ 1.42
TMEM260-203ENST00000539559 GUCY1B3Q02153 619 aa23.89■■□□□ 1.41
TMEM260-203ENST00000539559 SCRN1Q12765 414 aa23.89■■□□□ 1.41
TMEM260-203ENST00000539559 GOLPH3LQ9H4A5 285 aa23.89■■□□□ 1.41
TMEM260-203ENST00000539559 LMO7Q8WWI1 1683 aa23.89■■□□□ 1.41
TMEM260-203ENST00000539559 CYP21A2P08686 494 aa23.88■■□□□ 1.41
TMEM260-203ENST00000539559 FGD1P98174 961 aa23.88■■□□□ 1.41
TMEM260-203ENST00000539559 SMTNL1A8MU46 457 aa23.88■■□□□ 1.41
TMEM260-203ENST00000539559 FILIP1Q7Z7B0 1213 aa23.88■■□□□ 1.41
TMEM260-203ENST00000539559 NAP1L2Q9ULW6 460 aaPredicted RBP23.88■■□□□ 1.41
TMEM260-203ENST00000539559 A0A0G2JLW4 131 aa23.87■■□□□ 1.41
TMEM260-203ENST00000539559 DDX46Q7L014 1031 aaKnown RBP23.87■■□□□ 1.41
TMEM260-203ENST00000539559 NLRP2Q9NX02 1062 aa23.87■■□□□ 1.41
TMEM260-203ENST00000539559 TRMT1Q9NXH9 659 aaKnown RBP23.87■■□□□ 1.41
TMEM260-203ENST00000539559 SLAIN2Q9P270 581 aa23.87■■□□□ 1.41
TMEM260-203ENST00000539559 RGPD5Q99666 1765 aa23.87■■□□□ 1.41
TMEM260-203ENST00000539559 GOLGA6L19H0YKK7 550 aa23.87■■□□□ 1.41
TMEM260-203ENST00000539559 CCT2P78371 535 aaKnown RBP23.87■■□□□ 1.41
TMEM260-203ENST00000539559 TFCP2Q12800 502 aa23.87■■□□□ 1.41
TMEM260-203ENST00000539559 IQCB1Q15051 598 aa23.87■■□□□ 1.41
TMEM260-203ENST00000539559 PDIA6Q15084 440 aa23.87■■□□□ 1.41
TMEM260-203ENST00000539559 MYD88Q99836 296 aa23.87■■□□□ 1.41
TMEM260-203ENST00000539559 CCAR1Q8IX12 1150 aaKnown RBP23.87■■□□□ 1.41
TMEM260-203ENST00000539559 CCDC112Q8NEF3 446 aa23.87■■□□□ 1.41
TMEM260-203ENST00000539559 STOX1Q6ZVD7 989 aa23.86■■□□□ 1.41
TMEM260-203ENST00000539559 KLHL34Q8N239 644 aa23.86■■□□□ 1.41
TMEM260-203ENST00000539559 RAPGEF4Q8WZA2 1011 aa23.86■■□□□ 1.41
TMEM260-203ENST00000539559 HMG20BQ9P0W2 317 aa23.86■■□□□ 1.41
TMEM260-203ENST00000539559 CHMP4AQ9BY43 222 aa23.86■■□□□ 1.41
TMEM260-203ENST00000539559 NCOA5Q9HCD5 579 aaKnown RBP23.86■■□□□ 1.41
TMEM260-203ENST00000539559 LRRC8AQ8IWT6 810 aa23.85■■□□□ 1.41
TMEM260-203ENST00000539559 ZNF609O15014 1411 aa23.85■■□□□ 1.41
TMEM260-203ENST00000539559 ADD1P35611 737 aaKnown RBP23.85■■□□□ 1.41
TMEM260-203ENST00000539559 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.85■■□□□ 1.41
TMEM260-203ENST00000539559 DBNDD2Q9BQY9 259 aa23.85■■□□□ 1.41
TMEM260-203ENST00000539559 OVOS2A0A0G2JMS6 1433 aa23.84■■□□□ 1.41
TMEM260-203ENST00000539559 CSB-PGBD3P0DP91 1061 aa23.84■■□□□ 1.41
TMEM260-203ENST00000539559 APOBRQ0VD83 1088 aa23.84■■□□□ 1.41
TMEM260-203ENST00000539559 CEP135Q66GS9 1140 aa23.84■■□□□ 1.41
TMEM260-203ENST00000539559 CHST3Q7LGC8 479 aa23.84■■□□□ 1.41
TMEM260-203ENST00000539559 XAGE3Q8WTP9 111 aa23.84■■□□□ 1.41
TMEM260-203ENST00000539559 ALDH8A1Q9H2A2 487 aaPredicted RBP23.84■■□□□ 1.41
TMEM260-203ENST00000539559 DDX21Q9NR30 783 aaKnown RBP eCLIP23.84■■□□□ 1.41
TMEM260-203ENST00000539559 NEURL1BA8MQ27 555 aa23.84■■□□□ 1.41
TMEM260-203ENST00000539559 DDX58O95786 925 aaKnown RBP23.84■■□□□ 1.41
TMEM260-203ENST00000539559 USP28Q96RU2 1077 aa23.84■■□□□ 1.41
TMEM260-203ENST00000539559 CHRNA2Q15822 529 aa23.83■■□□□ 1.41
TMEM260-203ENST00000539559 TSGA10IPQ3SY00 556 aa23.83■■□□□ 1.41
TMEM260-203ENST00000539559 USPL1Q5W0Q7 1092 aa23.83■■□□□ 1.41
TMEM260-203ENST00000539559 HDAC5Q9UQL6 1122 aa23.83■■□□□ 1.41
TMEM260-203ENST00000539559 UTYO14607 1347 aa23.83■■□□□ 1.41
TMEM260-203ENST00000539559 COPS6Q7L5N1 327 aa23.83■■□□□ 1.4
TMEM260-203ENST00000539559 CTNNA3Q9UI47 895 aa23.83■■□□□ 1.4
TMEM260-203ENST00000539559 CPDO75976 1380 aa23.82■■□□□ 1.4
TMEM260-203ENST00000539559 PDIA4P13667 645 aaKnown RBP23.82■■□□□ 1.4
TMEM260-203ENST00000539559 GCKRQ14397 625 aa23.82■■□□□ 1.4
TMEM260-203ENST00000539559 SYTL4Q96C24 671 aaPredicted RBP23.82■■□□□ 1.4
TMEM260-203ENST00000539559 GTPBP4Q9BZE4 634 aaKnown RBP23.82■■□□□ 1.4
TMEM260-203ENST00000539559 ABCC6O95255 1503 aa23.82■■□□□ 1.4
TMEM260-203ENST00000539559 CTDNEP1O95476 244 aa23.82■■□□□ 1.4
TMEM260-203ENST00000539559 SKILP12757 684 aa23.82■■□□□ 1.4
TMEM260-203ENST00000539559 TNNI3KQ59H18 835 aa23.82■■□□□ 1.4
TMEM260-203ENST00000539559 CFAP45Q9UL16 551 aa23.82■■□□□ 1.4
TMEM260-203ENST00000539559 FPGT-TNNI3KV9GXZ4 949 aa23.82■■□□□ 1.4
TMEM260-203ENST00000539559 BECN2A8MW95 431 aa23.81■■□□□ 1.4
TMEM260-203ENST00000539559 COL18A1P39060 1754 aa23.81■■□□□ 1.4
TMEM260-203ENST00000539559 JCADQ9P266 1359 aa23.81■■□□□ 1.4
TMEM260-203ENST00000539559 TATP17735 454 aaPredicted RBP23.81■■□□□ 1.4
TMEM260-203ENST00000539559 NSUN7Q8NE18 718 aaKnown RBP23.81■■□□□ 1.4
TMEM260-203ENST00000539559 KRT32Q14532 448 aa23.8■■□□□ 1.4
TMEM260-203ENST00000539559 SOS2Q07890 1332 aaPredicted RBP23.8■■□□□ 1.4
TMEM260-203ENST00000539559 PTPDC1A2A3K4 754 aa23.8■■□□□ 1.4
TMEM260-203ENST00000539559 CCDC69A6NI79 296 aa23.8■■□□□ 1.4
TMEM260-203ENST00000539559 ATP5J2-PTCD1G3V325 749 aa23.8■■□□□ 1.4
TMEM260-203ENST00000539559 NPHP1O15259 732 aa23.8■■□□□ 1.4
TMEM260-203ENST00000539559 PTCD1O75127 700 aaKnown RBP23.8■■□□□ 1.4
TMEM260-203ENST00000539559 SNW1Q13573 536 aaKnown RBP23.8■■□□□ 1.4
TMEM260-203ENST00000539559 HEG1Q9ULI3 1381 aa23.8■■□□□ 1.4
TMEM260-203ENST00000539559 NEXNQ0ZGT2 675 aa23.79■■□□□ 1.4
TMEM260-203ENST00000539559 UBE3BQ7Z3V4 1068 aa23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms