RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 PDIA6Q15084 440 aa15.9■□□□□ 0.14
YBX3-207ENST00000539204 AGBL3Q8NEM8 1001 aa15.9■□□□□ 0.14
YBX3-207ENST00000539204 CELF1Q92879 486 aaKnown RBP15.9■□□□□ 0.14
YBX3-207ENST00000539204 CFHR5Q9BXR6 569 aa15.9■□□□□ 0.14
YBX3-207ENST00000539204 CLSPNQ9HAW4 1339 aa15.9■□□□□ 0.14
YBX3-207ENST00000539204 MKRN3Q13064 507 aaKnown RBP15.89■□□□□ 0.13
YBX3-207ENST00000539204 TCIRG1Q13488 830 aa15.89■□□□□ 0.13
YBX3-207ENST00000539204 LRP10Q7Z4F1 713 aa15.89■□□□□ 0.13
YBX3-207ENST00000539204 TBC1D16Q8TBP0 767 aa15.89■□□□□ 0.13
YBX3-207ENST00000539204 NECTIN2Q92692 538 aa15.89■□□□□ 0.13
YBX3-207ENST00000539204 R3HDMLQ9H3Y0 253 aa15.89■□□□□ 0.13
YBX3-207ENST00000539204 LAMB4A4D0S4 1761 aa15.89■□□□□ 0.13
YBX3-207ENST00000539204 ALDH1A1P00352 501 aa15.88■□□□□ 0.13
YBX3-207ENST00000539204 AIMP1Q12904 312 aaKnown RBP15.88■□□□□ 0.13
YBX3-207ENST00000539204 RSBN1LQ6PCB5 846 aaPredicted RBP15.88■□□□□ 0.13
YBX3-207ENST00000539204 COPS6Q7L5N1 327 aa15.88■□□□□ 0.13
YBX3-207ENST00000539204 MYOZ2Q9NPC6 264 aa15.88■□□□□ 0.13
YBX3-207ENST00000539204 TRIM17Q9Y577 477 aa15.88■□□□□ 0.13
YBX3-207ENST00000539204 PITPNM2Q9BZ72 1349 aa15.88■□□□□ 0.13
YBX3-207ENST00000539204 DUOX1Q9NRD9 1551 aa15.87■□□□□ 0.13
YBX3-207ENST00000539204 USP17L8P0C7I0 530 aa15.87■□□□□ 0.13
YBX3-207ENST00000539204 PRAMEF18Q5VWM3 479 aa15.87■□□□□ 0.13
YBX3-207ENST00000539204 COLQQ9Y215 455 aaPredicted RBP15.87■□□□□ 0.13
YBX3-207ENST00000539204 ANKRD36CQ5JPF3 1778 aa15.86■□□□□ 0.13
YBX3-207ENST00000539204 ANXA1P04083 346 aa15.86■□□□□ 0.13
YBX3-207ENST00000539204 NF2P35240 595 aa15.86■□□□□ 0.13
YBX3-207ENST00000539204 RPS8P62241 208 aaKnown RBP15.86■□□□□ 0.13
YBX3-207ENST00000539204 SF3B3Q15393 1217 aaKnown RBP15.86■□□□□ 0.13
YBX3-207ENST00000539204 SCAF8Q9UPN6 1271 aaKnown RBP15.86■□□□□ 0.13
YBX3-207ENST00000539204 PAPPA2Q9BXP8 1791 aa15.85■□□□□ 0.13
YBX3-207ENST00000539204 EN2P19622 333 aaPredicted RBP15.85■□□□□ 0.13
YBX3-207ENST00000539204 INHBEP58166 350 aa15.85■□□□□ 0.13
YBX3-207ENST00000539204 PROSER3Q2NL68 480 aa15.85■□□□□ 0.13
YBX3-207ENST00000539204 OTOP1Q7RTM1 612 aa15.85■□□□□ 0.13
YBX3-207ENST00000539204 XAGE3Q8WTP9 111 aa15.85■□□□□ 0.13
YBX3-207ENST00000539204 ANKIB1Q9P2G1 1089 aa15.85■□□□□ 0.13
YBX3-207ENST00000539204 SZT2Q5T011 3432 aa15.84■□□□□ 0.13
YBX3-207ENST00000539204 ZNF428Q96B54 188 aa15.84■□□□□ 0.13
YBX3-207ENST00000539204 PODXL2Q9NZ53 605 aa15.84■□□□□ 0.13
YBX3-207ENST00000539204 CENPFP49454 3210 aa15.84■□□□□ 0.13
YBX3-207ENST00000539204 TAF1P21675 1872 aa15.84■□□□□ 0.13
YBX3-207ENST00000539204 DLL1O00548 723 aa15.83■□□□□ 0.12
YBX3-207ENST00000539204 PTPN12Q05209 780 aaKnown RBP15.83■□□□□ 0.12
YBX3-207ENST00000539204 ARMC9Q7Z3E5 817 aa15.83■□□□□ 0.12
YBX3-207ENST00000539204 FAM89AQ96GI7 184 aa15.83■□□□□ 0.12
YBX3-207ENST00000539204 PCGF6Q9BYE7 350 aa15.83■□□□□ 0.12
YBX3-207ENST00000539204 TSPYL4Q9UJ04 414 aa15.83■□□□□ 0.12
YBX3-207ENST00000539204 PTPN22Q9Y2R2 807 aa15.83■□□□□ 0.12
YBX3-207ENST00000539204 KIAA0100Q14667 2235 aaKnown RBP15.82■□□□□ 0.12
YBX3-207ENST00000539204 UFL1O94874 794 aa15.82■□□□□ 0.12
YBX3-207ENST00000539204 NBPF9Q3BBW0 867 aa15.82■□□□□ 0.12
YBX3-207ENST00000539204 SPRYD7Q5W111 196 aa15.82■□□□□ 0.12
YBX3-207ENST00000539204 GMLQ99445 158 aa15.82■□□□□ 0.12
YBX3-207ENST00000539204 TMEM106CQ9BVX2 250 aa15.82■□□□□ 0.12
YBX3-207ENST00000539204 GGA1Q9UJY5 639 aa15.82■□□□□ 0.12
YBX3-207ENST00000539204 LAMB2P55268 1798 aa15.82■□□□□ 0.12
YBX3-207ENST00000539204 BRCA2P51587 3418 aa15.81■□□□□ 0.12
YBX3-207ENST00000539204 USP17L3A6NCW0 530 aa15.81■□□□□ 0.12
YBX3-207ENST00000539204 USP17L4A6NCW7 530 aa15.81■□□□□ 0.12
YBX3-207ENST00000539204 PPP2R1AP30153 589 aa15.81■□□□□ 0.12
YBX3-207ENST00000539204 TRIM26Q12899 539 aaPredicted RBP15.81■□□□□ 0.12
YBX3-207ENST00000539204 USP17L1Q7RTZ2 530 aa15.81■□□□□ 0.12
YBX3-207ENST00000539204 ERO1AQ96HE7 468 aa15.81■□□□□ 0.12
YBX3-207ENST00000539204 MANSC4A6NHS7 340 aaPredicted RBP15.8■□□□□ 0.12
YBX3-207ENST00000539204 PRKG1Q13976 671 aa15.8■□□□□ 0.12
YBX3-207ENST00000539204 NFE2L2Q16236 605 aa15.8■□□□□ 0.12
YBX3-207ENST00000539204 PODNQ7Z5L7 613 aa15.8■□□□□ 0.12
YBX3-207ENST00000539204 IFNL1Q8IU54 200 aa15.8■□□□□ 0.12
YBX3-207ENST00000539204 OGFOD1Q8N543 542 aa15.8■□□□□ 0.12
YBX3-207ENST00000539204 ARMC5Q96C12 935 aa15.8■□□□□ 0.12
YBX3-207ENST00000539204 SLC10A4Q96EP9 437 aa15.8■□□□□ 0.12
YBX3-207ENST00000539204 KDM3BQ7LBC6 1761 aa15.8■□□□□ 0.12
YBX3-207ENST00000539204 LRRC37AA6NMS7 1700 aa15.8■□□□□ 0.12
YBX3-207ENST00000539204 ZNF609O15014 1411 aa15.79■□□□□ 0.12
YBX3-207ENST00000539204 RTL5Q5HYW3 569 aaPredicted RBP15.79■□□□□ 0.12
YBX3-207ENST00000539204 LDLRAD1Q5T700 205 aa15.79■□□□□ 0.12
YBX3-207ENST00000539204 SLC17A8Q8NDX2 589 aa15.79■□□□□ 0.12
YBX3-207ENST00000539204 EFCC1Q9HA90 598 aa15.79■□□□□ 0.12
YBX3-207ENST00000539204 HTTP42858 3142 aa15.79■□□□□ 0.12
YBX3-207ENST00000539204 WNT10BO00744 389 aa15.78■□□□□ 0.12
YBX3-207ENST00000539204 SCN9AQ15858 1988 aa15.78■□□□□ 0.12
YBX3-207ENST00000539204 ATP5J2-PTCD1G3V325 749 aa15.77■□□□□ 0.12
YBX3-207ENST00000539204 IRS4O14654 1257 aaPredicted RBP15.77■□□□□ 0.12
YBX3-207ENST00000539204 ANKRD13DQ6ZTN6 518 aa15.77■□□□□ 0.12
YBX3-207ENST00000539204 NBPF11Q86T75 865 aa15.77■□□□□ 0.12
YBX3-207ENST00000539204 PLBD2Q8NHP8 589 aa15.77■□□□□ 0.12
YBX3-207ENST00000539204 CD99L2Q8TCZ2 262 aa15.77■□□□□ 0.12
YBX3-207ENST00000539204 ISCA1Q9BUE6 129 aa15.77■□□□□ 0.12
YBX3-207ENST00000539204 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.77■□□□□ 0.12
YBX3-207ENST00000539204 ANGEL1Q9UNK9 670 aaKnown RBP15.77■□□□□ 0.12
YBX3-207ENST00000539204 H0YGN5 161 aa15.76■□□□□ 0.11
YBX3-207ENST00000539204 OTUD7BQ6GQQ9 843 aa15.76■□□□□ 0.11
YBX3-207ENST00000539204 OTUD5Q96G74 571 aa15.76■□□□□ 0.11
YBX3-207ENST00000539204 PLEKHF1Q96S99 279 aa15.76■□□□□ 0.11
YBX3-207ENST00000539204 PNNQ9H307 717 aaKnown RBP15.76■□□□□ 0.11
YBX3-207ENST00000539204 SEC31BQ9NQW1 1179 aa15.76■□□□□ 0.11
YBX3-207ENST00000539204 BABAM1Q9NWV8 329 aa15.76■□□□□ 0.11
YBX3-207ENST00000539204 DDX60Q8IY21 1712 aaKnown RBP15.76■□□□□ 0.11
YBX3-207ENST00000539204 TRIOBPQ9H2D6 2365 aa15.75■□□□□ 0.11
YBX3-207ENST00000539204 ZBTB48P10074 688 aaPredicted RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms