RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SH3TC1Q8TE82 1336 aa15.6■□□□□ 0.09
LDLR-203ENST00000535915 COL5A2P05997 1499 aaPredicted RBP15.6■□□□□ 0.09
LDLR-203ENST00000535915 ZNF594Q96JF6 807 aaPredicted RBP15.6■□□□□ 0.09
LDLR-203ENST00000535915 USP25Q9UHP3 1055 aa15.6■□□□□ 0.09
LDLR-203ENST00000535915 SHANK3Q9BYB0 1731 aa15.6■□□□□ 0.09
LDLR-203ENST00000535915 PALLDQ8WX93 1383 aa15.6■□□□□ 0.09
LDLR-203ENST00000535915 IL2RBP14784 551 aa15.59■□□□□ 0.09
LDLR-203ENST00000535915 LRRC24Q50LG9 513 aa15.59■□□□□ 0.09
LDLR-203ENST00000535915 GTF3C6Q969F1 213 aa15.59■□□□□ 0.09
LDLR-203ENST00000535915 GPR108Q9NPR9 543 aa15.59■□□□□ 0.09
LDLR-203ENST00000535915 FGD1P98174 961 aa15.59■□□□□ 0.09
LDLR-203ENST00000535915 EYA2O00167 538 aa15.58■□□□□ 0.09
LDLR-203ENST00000535915 SLFNL1Q499Z3 407 aa15.58■□□□□ 0.09
LDLR-203ENST00000535915 ELP1O95163 1332 aa15.58■□□□□ 0.08
LDLR-203ENST00000535915 JAK2O60674 1132 aa15.58■□□□□ 0.08
LDLR-203ENST00000535915 NKX1-1Q15270 411 aaPredicted RBP15.58■□□□□ 0.08
LDLR-203ENST00000535915 LRRC2Q9BYS8 371 aa15.58■□□□□ 0.08
LDLR-203ENST00000535915 STRN4Q9NRL3 753 aa15.58■□□□□ 0.08
LDLR-203ENST00000535915 HELLSQ9NRZ9 838 aa15.58■□□□□ 0.08
LDLR-203ENST00000535915 FUCA2Q9BTY2 467 aa15.58■□□□□ 0.08
LDLR-203ENST00000535915 ZNF330Q9Y3S2 320 aaPredicted RBP15.58■□□□□ 0.08
LDLR-203ENST00000535915 A0A1B0GUL7 405 aa15.57■□□□□ 0.08
LDLR-203ENST00000535915 IFIT1P09914 478 aaKnown RBP15.57■□□□□ 0.08
LDLR-203ENST00000535915 BRF1Q92994 677 aa15.57■□□□□ 0.08
LDLR-203ENST00000535915 SPATA32Q96LK8 384 aa15.57■□□□□ 0.08
LDLR-203ENST00000535915 SCAND2PQ9GZW5 306 aaPredicted RBP15.57■□□□□ 0.08
LDLR-203ENST00000535915 TFIP11Q9UBB9 837 aaKnown RBP15.57■□□□□ 0.08
LDLR-203ENST00000535915 ADCY5O95622 1261 aa15.57■□□□□ 0.08
LDLR-203ENST00000535915 STOX1Q6ZVD7 989 aa15.57■□□□□ 0.08
LDLR-203ENST00000535915 CARD10Q9BWT7 1032 aa15.57■□□□□ 0.08
LDLR-203ENST00000535915 GOLGA6L4A6NEF3 574 aa15.56■□□□□ 0.08
LDLR-203ENST00000535915 HMGB1P09429 215 aaKnown RBP15.56■□□□□ 0.08
LDLR-203ENST00000535915 KLHL34Q8N239 644 aa15.56■□□□□ 0.08
LDLR-203ENST00000535915 SPEF2Q9C093 1822 aa15.56■□□□□ 0.08
LDLR-203ENST00000535915 TPM2P07951 284 aa15.56■□□□□ 0.08
LDLR-203ENST00000535915 DDX11Q96FC9 970 aa15.56■□□□□ 0.08
LDLR-203ENST00000535915 PUS3Q9BZE2 481 aaKnown RBP15.56■□□□□ 0.08
LDLR-203ENST00000535915 ABCA3Q99758 1704 aa15.56■□□□□ 0.08
LDLR-203ENST00000535915 KAT6BQ8WYB5 2073 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 H3BQV1 296 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 CIAO1O76071 339 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 LIG1P18858 919 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 EVA1CP58658 441 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 PLCB2Q00722 1185 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 ZMYM1Q5SVZ6 1142 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 IFFO2Q5TF58 517 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 MPNDQ8N594 471 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 DSCC1Q9BVC3 393 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 ATG3Q9NT62 314 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.55■□□□□ 0.08
LDLR-203ENST00000535915 MYH15Q9Y2K3 1946 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 CCDC192P0DO97 292 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 CCDC57Q2TAC2 916 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 DHX32Q7L7V1 743 aaKnown RBP15.55■□□□□ 0.08
LDLR-203ENST00000535915 NUP62CLQ9H1M0 184 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 TOGARAM1Q9Y4F4 1720 aa15.55■□□□□ 0.08
LDLR-203ENST00000535915 SOS2Q07890 1332 aaPredicted RBP15.55■□□□□ 0.08
LDLR-203ENST00000535915 KDM4AO75164 1064 aa15.54■□□□□ 0.08
LDLR-203ENST00000535915 SCRN1Q12765 414 aa15.54■□□□□ 0.08
LDLR-203ENST00000535915 TNS2Q63HR2 1409 aa15.54■□□□□ 0.08
LDLR-203ENST00000535915 LEO1Q8WVC0 666 aaPredicted RBP15.54■□□□□ 0.08
LDLR-203ENST00000535915 TMOD3Q9NYL9 352 aa15.54■□□□□ 0.08
LDLR-203ENST00000535915 CEP126Q9P2H0 1117 aa15.54■□□□□ 0.08
LDLR-203ENST00000535915 CAMK4Q16566 473 aa15.54■□□□□ 0.08
LDLR-203ENST00000535915 R3HCC1Q9Y3T6 440 aaKnown RBP15.54■□□□□ 0.08
LDLR-203ENST00000535915 RNF113AO15541 343 aaKnown RBP15.53■□□□□ 0.08
LDLR-203ENST00000535915 HSPD1P10809 573 aaKnown RBP15.53■□□□□ 0.08
LDLR-203ENST00000535915 TCIRG1Q13488 830 aa15.53■□□□□ 0.08
LDLR-203ENST00000535915 MAP3K11Q16584 847 aa15.53■□□□□ 0.08
LDLR-203ENST00000535915 ISCA1Q9BUE6 129 aa15.53■□□□□ 0.08
LDLR-203ENST00000535915 SLAIN2Q9P270 581 aa15.53■□□□□ 0.08
LDLR-203ENST00000535915 MAST3O60307 1309 aa15.53■□□□□ 0.08
LDLR-203ENST00000535915 FKBP4Q02790 459 aaKnown RBP eCLIP15.53■□□□□ 0.08
LDLR-203ENST00000535915 GORABQ5T7V8 394 aa15.53■□□□□ 0.08
LDLR-203ENST00000535915 TICAM2Q86XR7 235 aa15.53■□□□□ 0.08
LDLR-203ENST00000535915 APOBRQ0VD83 1088 aa15.53■□□□□ 0.08
LDLR-203ENST00000535915 KIAA2012Q0VF49 1180 aa15.53■□□□□ 0.08
LDLR-203ENST00000535915 CCDC85AQ96PX6 553 aaPredicted RBP15.53■□□□□ 0.08
LDLR-203ENST00000535915 DACT1Q9NYF0 836 aa15.53■□□□□ 0.08
LDLR-203ENST00000535915 E7EWF7 191 aa15.52■□□□□ 0.08
LDLR-203ENST00000535915 PFKFB2O60825 505 aa15.52■□□□□ 0.08
LDLR-203ENST00000535915 RESTQ13127 1097 aa15.52■□□□□ 0.08
LDLR-203ENST00000535915 CCDC158Q5M9N0 1113 aa15.52■□□□□ 0.08
LDLR-203ENST00000535915 PDCL3Q9H2J4 239 aa15.52■□□□□ 0.08
LDLR-203ENST00000535915 MYH7P12883 1935 aa15.52■□□□□ 0.07
LDLR-203ENST00000535915 A0A0G2JLW4 131 aa15.52■□□□□ 0.07
LDLR-203ENST00000535915 TTC39AQ5SRH9 613 aa15.52■□□□□ 0.07
LDLR-203ENST00000535915 KIF6Q6ZMV9 814 aa15.52■□□□□ 0.07
LDLR-203ENST00000535915 ZNF830Q96NB3 372 aaPredicted RBP15.52■□□□□ 0.07
LDLR-203ENST00000535915 LLPHQ9BRT6 129 aaKnown RBP15.52■□□□□ 0.07
LDLR-203ENST00000535915 TNMDQ9H2S6 317 aa15.52■□□□□ 0.07
LDLR-203ENST00000535915 NAP1L2Q9ULW6 460 aaPredicted RBP15.52■□□□□ 0.07
LDLR-203ENST00000535915 TAF7LQ5H9L4 462 aa15.51■□□□□ 0.07
LDLR-203ENST00000535915 SMARCC2Q8TAQ2 1214 aa15.51■□□□□ 0.07
LDLR-203ENST00000535915 FAM89AQ96GI7 184 aa15.51■□□□□ 0.07
LDLR-203ENST00000535915 ZSCAN16Q9H4T2 348 aaPredicted RBP15.51■□□□□ 0.07
LDLR-203ENST00000535915 AKAP2Q9Y2D5 859 aa15.51■□□□□ 0.07
LDLR-203ENST00000535915 M0R2C6 588 aa15.51■□□□□ 0.07
LDLR-203ENST00000535915 EXOSC10Q01780 885 aaKnown RBP15.51■□□□□ 0.07
LDLR-203ENST00000535915 BICD2Q8TD16 824 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms