RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 WASHC4Q2M389 1173 aa16.36■□□□□ 0.21
VPS28-216ENST00000533806 ZNRF3Q9ULT6 936 aa16.36■□□□□ 0.21
VPS28-216ENST00000533806 MYH3P11055 1940 aa16.36■□□□□ 0.21
VPS28-216ENST00000533806 XDHP47989 1333 aa16.36■□□□□ 0.21
VPS28-216ENST00000533806 VEGFAP15692 232 aaPredicted RBP16.35■□□□□ 0.21
VPS28-216ENST00000533806 IGHMBP2P38935 993 aaKnown RBP16.35■□□□□ 0.21
VPS28-216ENST00000533806 GPC2Q8N158 579 aa16.35■□□□□ 0.21
VPS28-216ENST00000533806 WDR90Q96KV7 1748 aa16.34■□□□□ 0.21
VPS28-216ENST00000533806 YDJCA8MPS7 323 aa16.34■□□□□ 0.21
VPS28-216ENST00000533806 C6orf229H3BNL8 230 aa16.34■□□□□ 0.21
VPS28-216ENST00000533806 C1QTNF8P60827 252 aa16.34■□□□□ 0.21
VPS28-216ENST00000533806 CCDC57Q2TAC2 916 aa16.34■□□□□ 0.21
VPS28-216ENST00000533806 NIM1KQ8IY84 436 aa16.34■□□□□ 0.21
VPS28-216ENST00000533806 FRAT1Q92837 279 aaPredicted RBP16.34■□□□□ 0.21
VPS28-216ENST00000533806 GPR101Q96P66 508 aaPredicted RBP16.34■□□□□ 0.21
VPS28-216ENST00000533806 ANKIB1Q9P2G1 1089 aa16.34■□□□□ 0.21
VPS28-216ENST00000533806 GGA1Q9UJY5 639 aa16.34■□□□□ 0.21
VPS28-216ENST00000533806 TOMM70O94826 608 aa16.33■□□□□ 0.2
VPS28-216ENST00000533806 UFL1O94874 794 aa16.33■□□□□ 0.2
VPS28-216ENST00000533806 ATP2B4P23634 1241 aa16.33■□□□□ 0.2
VPS28-216ENST00000533806 CXCL9Q07325 125 aa16.33■□□□□ 0.2
VPS28-216ENST00000533806 ZKSCAN2Q63HK3 967 aa16.33■□□□□ 0.2
VPS28-216ENST00000533806 EYA3Q99504 573 aa16.33■□□□□ 0.2
VPS28-216ENST00000533806 MPHOSPH8Q99549 860 aa16.33■□□□□ 0.2
VPS28-216ENST00000533806 EIF6P56537 245 aaKnown RBP16.32■□□□□ 0.2
VPS28-216ENST00000533806 ZNF594Q96JF6 807 aaPredicted RBP16.32■□□□□ 0.2
VPS28-216ENST00000533806 MEIS3Q99687 375 aa16.32■□□□□ 0.2
VPS28-216ENST00000533806 ANKRD2Q9GZV1 360 aa16.32■□□□□ 0.2
VPS28-216ENST00000533806 IRS2Q9Y4H2 1338 aa16.31■□□□□ 0.2
VPS28-216ENST00000533806 RIMBP2O15034 1052 aa16.31■□□□□ 0.2
VPS28-216ENST00000533806 UBTFL1P0CB47 393 aaPredicted RBP16.31■□□□□ 0.2
VPS28-216ENST00000533806 RFX5P48382 616 aaPredicted RBP16.31■□□□□ 0.2
VPS28-216ENST00000533806 CHRNDQ07001 517 aa16.31■□□□□ 0.2
VPS28-216ENST00000533806 LDHAL6AQ6ZMR3 332 aa16.31■□□□□ 0.2
VPS28-216ENST00000533806 CLUAP1Q96AJ1 413 aa16.31■□□□□ 0.2
VPS28-216ENST00000533806 ZC3H12CQ9C0D7 883 aaKnown RBP16.31■□□□□ 0.2
VPS28-216ENST00000533806 LEMD3Q9Y2U8 911 aa16.31■□□□□ 0.2
VPS28-216ENST00000533806 CHMP3Q9Y3E7 222 aa16.31■□□□□ 0.2
VPS28-216ENST00000533806 RIPOR2Q9Y4F9 1068 aa16.31■□□□□ 0.2
VPS28-216ENST00000533806 RLBP1P12271 317 aa16.3■□□□□ 0.2
VPS28-216ENST00000533806 TMEM57Q8N5G2 664 aa16.3■□□□□ 0.2
VPS28-216ENST00000533806 RBM46Q8TBY0 533 aaKnown RBP16.3■□□□□ 0.2
VPS28-216ENST00000533806 PUS3Q9BZE2 481 aaKnown RBP16.3■□□□□ 0.2
VPS28-216ENST00000533806 KCNQ5Q9NR82 932 aa16.3■□□□□ 0.2
VPS28-216ENST00000533806 MED23Q9ULK4 1368 aa16.29■□□□□ 0.2
VPS28-216ENST00000533806 SCNN1DP51172 638 aa16.29■□□□□ 0.2
VPS28-216ENST00000533806 DOK7Q18PE1 504 aa16.29■□□□□ 0.2
VPS28-216ENST00000533806 C15orf52Q6ZUT6 534 aaKnown RBP16.29■□□□□ 0.2
VPS28-216ENST00000533806 TXNRD3Q86VQ6 643 aa16.29■□□□□ 0.2
VPS28-216ENST00000533806 TAF1DQ9H5J8 278 aaPredicted RBP16.29■□□□□ 0.2
VPS28-216ENST00000533806 DBNDD1Q9H9R9 158 aa16.29■□□□□ 0.2
VPS28-216ENST00000533806 ZNF804BA4D1E1 1349 aa16.28■□□□□ 0.2
VPS28-216ENST00000533806 IQCA1LA6NCM1 817 aa16.28■□□□□ 0.2
VPS28-216ENST00000533806 SNAP23O00161 211 aa16.28■□□□□ 0.2
VPS28-216ENST00000533806 ECE2O60344 883 aa16.28■□□□□ 0.2
VPS28-216ENST00000533806 RAD17O75943 681 aa16.28■□□□□ 0.2
VPS28-216ENST00000533806 GNAI3P08754 354 aa16.28■□□□□ 0.2
VPS28-216ENST00000533806 TNIP1Q15025 636 aa16.28■□□□□ 0.2
VPS28-216ENST00000533806 CIAPIN1Q6FI81 312 aa16.28■□□□□ 0.2
VPS28-216ENST00000533806 DZIP1LQ8IYY4 767 aaKnown RBP16.28■□□□□ 0.2
VPS28-216ENST00000533806 LRRFIP2Q9Y608 721 aaKnown RBP16.28■□□□□ 0.2
VPS28-216ENST00000533806 GJA3Q9Y6H8 435 aa16.28■□□□□ 0.2
VPS28-216ENST00000533806 TAF5LO75529 589 aa16.27■□□□□ 0.2
VPS28-216ENST00000533806 KLRK1P26718 216 aa16.27■□□□□ 0.2
VPS28-216ENST00000533806 PTPN12Q05209 780 aaKnown RBP16.27■□□□□ 0.2
VPS28-216ENST00000533806 MTX1Q13505 466 aa16.27■□□□□ 0.2
VPS28-216ENST00000533806 HELBQ8NG08 1087 aaPredicted RBP16.27■□□□□ 0.2
VPS28-216ENST00000533806 HACL1Q9UJ83 578 aa16.27■□□□□ 0.2
VPS28-216ENST00000533806 RCAN3Q9UKA8 241 aa16.27■□□□□ 0.2
VPS28-216ENST00000533806 HDAC5Q9UQL6 1122 aa16.27■□□□□ 0.2
VPS28-216ENST00000533806 PSMD14O00487 310 aa16.26■□□□□ 0.19
VPS28-216ENST00000533806 VIL1P09327 827 aaKnown RBP16.26■□□□□ 0.19
VPS28-216ENST00000533806 POTEIP0CG38 1075 aa16.26■□□□□ 0.19
VPS28-216ENST00000533806 POTEJP0CG39 1038 aa16.26■□□□□ 0.19
VPS28-216ENST00000533806 EPS15P42566 896 aa16.26■□□□□ 0.19
VPS28-216ENST00000533806 LRRC24Q50LG9 513 aa16.26■□□□□ 0.19
VPS28-216ENST00000533806 TAF7LQ5H9L4 462 aa16.26■□□□□ 0.19
VPS28-216ENST00000533806 PODNQ7Z5L7 613 aa16.26■□□□□ 0.19
VPS28-216ENST00000533806 VGLL2Q8N8G2 317 aa16.26■□□□□ 0.19
VPS28-216ENST00000533806 KLHDC4Q8TBB5 520 aa16.26■□□□□ 0.19
VPS28-216ENST00000533806 CNNM1Q9NRU3 951 aa16.26■□□□□ 0.19
VPS28-216ENST00000533806 GPRC5DQ9NZD1 345 aa16.26■□□□□ 0.19
VPS28-216ENST00000533806 SPEF2Q9C093 1822 aa16.25■□□□□ 0.19
VPS28-216ENST00000533806 ZBTB7BO15156 539 aaPredicted RBP16.25■□□□□ 0.19
VPS28-216ENST00000533806 EPHX2P34913 555 aa16.25■□□□□ 0.19
VPS28-216ENST00000533806 GMPSP49915 693 aaPredicted RBP16.25■□□□□ 0.19
VPS28-216ENST00000533806 FSTL1Q12841 308 aa16.25■□□□□ 0.19
VPS28-216ENST00000533806 C16orf71Q8IYS4 520 aaPredicted RBP16.25■□□□□ 0.19
VPS28-216ENST00000533806 DPF2Q92785 391 aa16.25■□□□□ 0.19
VPS28-216ENST00000533806 COA1Q9GZY4 146 aa16.25■□□□□ 0.19
VPS28-216ENST00000533806 MROH5Q6ZUA9 1318 aa16.24■□□□□ 0.19
VPS28-216ENST00000533806 ATG9AQ7Z3C6 839 aa16.24■□□□□ 0.19
VPS28-216ENST00000533806 ZNF609O15014 1411 aa16.24■□□□□ 0.19
VPS28-216ENST00000533806 CEP350Q5VT06 3117 aa16.24■□□□□ 0.19
VPS28-216ENST00000533806 SCN4AP35499 1836 aa16.24■□□□□ 0.19
VPS28-216ENST00000533806 EYA2O00167 538 aa16.23■□□□□ 0.19
VPS28-216ENST00000533806 GNAI2P04899 355 aa16.23■□□□□ 0.19
VPS28-216ENST00000533806 UBE4AQ14139 1066 aa16.23■□□□□ 0.19
VPS28-216ENST00000533806 SMC1BQ8NDV3 1235 aa16.23■□□□□ 0.19
VPS28-216ENST00000533806 GMLQ99445 158 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms