RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 GPRC5DQ9NZD1 345 aa13.3□□□□□ -0.28
CAPN1-225ENST00000533704 GGA1Q9UJY5 639 aa13.3□□□□□ -0.28
CAPN1-225ENST00000533704 POLR2AP24928 1970 aaKnown RBP13.29□□□□□ -0.28
CAPN1-225ENST00000533704 ECE2O60344 883 aa13.29□□□□□ -0.28
CAPN1-225ENST00000533704 ZC3H12CQ9C0D7 883 aaKnown RBP13.29□□□□□ -0.28
CAPN1-225ENST00000533704 CREBZFQ9NS37 354 aa13.29□□□□□ -0.28
CAPN1-225ENST00000533704 MKRN1Q9UHC7 482 aaKnown RBP13.29□□□□□ -0.28
CAPN1-225ENST00000533704 PASKQ96RG2 1323 aa13.29□□□□□ -0.28
CAPN1-225ENST00000533704 ITGBL1O95965 494 aaPredicted RBP13.28□□□□□ -0.28
CAPN1-225ENST00000533704 SLC4A10Q6U841 1118 aa13.28□□□□□ -0.28
CAPN1-225ENST00000533704 USP50Q70EL3 339 aaPredicted RBP13.28□□□□□ -0.28
CAPN1-225ENST00000533704 ADARB2Q9NS39 739 aaKnown RBP13.28□□□□□ -0.28
CAPN1-225ENST00000533704 ZBTB12Q9Y330 459 aaPredicted RBP13.28□□□□□ -0.28
CAPN1-225ENST00000533704 XDHP47989 1333 aa13.28□□□□□ -0.28
CAPN1-225ENST00000533704 ZNF521Q96K83 1311 aa13.28□□□□□ -0.28
CAPN1-225ENST00000533704 PSME4Q14997 1843 aa13.27□□□□□ -0.28
CAPN1-225ENST00000533704 SHTN1A0MZ66 631 aa13.27□□□□□ -0.29
CAPN1-225ENST00000533704 PSMD14O00487 310 aa13.27□□□□□ -0.29
CAPN1-225ENST00000533704 FAM161AQ3B820 660 aa13.27□□□□□ -0.29
CAPN1-225ENST00000533704 KCNQ5Q9NR82 932 aa13.27□□□□□ -0.29
CAPN1-225ENST00000533704 PODXL2Q9NZ53 605 aa13.27□□□□□ -0.29
CAPN1-225ENST00000533704 CNOT7Q9UIV1 285 aaKnown RBP13.27□□□□□ -0.29
CAPN1-225ENST00000533704 CHMP3Q9Y3E7 222 aa13.27□□□□□ -0.29
CAPN1-225ENST00000533704 TMEM88BA6NKF7 163 aa13.26□□□□□ -0.29
CAPN1-225ENST00000533704 H7C1D1 291 aa13.26□□□□□ -0.29
CAPN1-225ENST00000533704 ITGA6P23229 1130 aa13.26□□□□□ -0.29
CAPN1-225ENST00000533704 IGHMBP2P38935 993 aaKnown RBP13.26□□□□□ -0.29
CAPN1-225ENST00000533704 FMR1Q06787 632 aaKnown RBP eCLIP13.26□□□□□ -0.292e-6■■■■□ 24.3
CAPN1-225ENST00000533704 MICALL2Q8IY33 904 aa13.26□□□□□ -0.29
CAPN1-225ENST00000533704 JMYQ8N9B5 988 aa13.26□□□□□ -0.29
CAPN1-225ENST00000533704 RTL9Q8NET4 1388 aa13.25□□□□□ -0.29
CAPN1-225ENST00000533704 E9PSI1 815 aa13.25□□□□□ -0.29
CAPN1-225ENST00000533704 TRAF5O00463 557 aa13.25□□□□□ -0.29
CAPN1-225ENST00000533704 ATP2B4P23634 1241 aa13.25□□□□□ -0.29
CAPN1-225ENST00000533704 CASP7P55210 303 aa13.25□□□□□ -0.29
CAPN1-225ENST00000533704 BEND3Q5T5X7 828 aa13.25□□□□□ -0.29
CAPN1-225ENST00000533704 TRPM4Q8TD43 1214 aa13.25□□□□□ -0.29
CAPN1-225ENST00000533704 MPHOSPH8Q99549 860 aa13.25□□□□□ -0.29
CAPN1-225ENST00000533704 PLA2G12BQ9BX93 195 aa13.25□□□□□ -0.29
CAPN1-225ENST00000533704 BSDC1Q9NW68 430 aaPredicted RBP13.25□□□□□ -0.29
CAPN1-225ENST00000533704 ABT1Q9ULW3 272 aaKnown RBP13.25□□□□□ -0.29
CAPN1-225ENST00000533704 A0A1B0GUL6 1792 aa13.25□□□□□ -0.29
CAPN1-225ENST00000533704 WTIPA6NIX2 430 aaPredicted RBP13.24□□□□□ -0.29
CAPN1-225ENST00000533704 RBM26Q5T8P6 1007 aaKnown RBP13.24□□□□□ -0.29
CAPN1-225ENST00000533704 CDCA7LQ96GN5 454 aa13.24□□□□□ -0.29
CAPN1-225ENST00000533704 C9orf78Q9NZ63 289 aaPredicted RBP13.24□□□□□ -0.29
CAPN1-225ENST00000533704 MINPP1Q9UNW1 487 aa13.24□□□□□ -0.29
CAPN1-225ENST00000533704 ANKRD18BA2A2Z9 1011 aa13.23□□□□□ -0.29
CAPN1-225ENST00000533704 CCER2I3L3R5 266 aa13.23□□□□□ -0.29
CAPN1-225ENST00000533704 GRM8O00222 908 aa13.23□□□□□ -0.29
CAPN1-225ENST00000533704 CCT4P50991 539 aaKnown RBP13.23□□□□□ -0.29
CAPN1-225ENST00000533704 SLFN5Q08AF3 891 aa13.23□□□□□ -0.29
CAPN1-225ENST00000533704 TBC1D10BQ4KMP7 808 aaPredicted RBP13.23□□□□□ -0.29
CAPN1-225ENST00000533704 PAXIP1Q6ZW49 1069 aaPredicted RBP13.23□□□□□ -0.29
CAPN1-225ENST00000533704 SAMD7Q7Z3H4 446 aa13.23□□□□□ -0.29
CAPN1-225ENST00000533704 FBXW7Q969H0 707 aa13.23□□□□□ -0.29
CAPN1-225ENST00000533704 GLIS2Q9BZE0 524 aaPredicted RBP13.23□□□□□ -0.29
CAPN1-225ENST00000533704 SRCIN1Q9C0H9 1055 aa13.23□□□□□ -0.29
CAPN1-225ENST00000533704 CNTNAP1P78357 1384 aa13.22□□□□□ -0.29
CAPN1-225ENST00000533704 CSF1RP07333 972 aa13.22□□□□□ -0.29
CAPN1-225ENST00000533704 KCNJ4P48050 445 aa13.22□□□□□ -0.29
CAPN1-225ENST00000533704 HIRAP54198 1017 aaPredicted RBP13.22□□□□□ -0.29
CAPN1-225ENST00000533704 FOXO4P98177 505 aa13.22□□□□□ -0.29
CAPN1-225ENST00000533704 IFIT5Q13325 482 aaKnown RBP13.22□□□□□ -0.29
CAPN1-225ENST00000533704 TAF7LQ5H9L4 462 aa13.22□□□□□ -0.29
CAPN1-225ENST00000533704 MRPL50Q8N5N7 158 aaKnown RBP13.22□□□□□ -0.29
CAPN1-225ENST00000533704 DPF2Q92785 391 aa13.22□□□□□ -0.29
CAPN1-225ENST00000533704 ZNF408Q9H9D4 720 aa13.22□□□□□ -0.29
CAPN1-225ENST00000533704 MED23Q9ULK4 1368 aa13.21□□□□□ -0.29
CAPN1-225ENST00000533704 ALDH1L1O75891 902 aa13.21□□□□□ -0.29
CAPN1-225ENST00000533704 HSPA1AP0DMV8 641 aaKnown RBP13.21□□□□□ -0.29
CAPN1-225ENST00000533704 HSPA1BP0DMV9 641 aaKnown RBP13.21□□□□□ -0.29
CAPN1-225ENST00000533704 RPS12P25398 132 aaKnown RBP13.21□□□□□ -0.29
CAPN1-225ENST00000533704 VEGFBP49765 207 aa13.21□□□□□ -0.29
CAPN1-225ENST00000533704 GRM1Q13255 1194 aa13.21□□□□□ -0.29
CAPN1-225ENST00000533704 LMBR1LQ6UX01 489 aa13.21□□□□□ -0.29
CAPN1-225ENST00000533704 SSH1Q8WYL5 1049 aa13.21□□□□□ -0.29
CAPN1-225ENST00000533704 ANKRD2Q9GZV1 360 aa13.21□□□□□ -0.29
CAPN1-225ENST00000533704 ZNF804BA4D1E1 1349 aa13.2□□□□□ -0.3
CAPN1-225ENST00000533704 EGFRP00533 1210 aa13.2□□□□□ -0.3
CAPN1-225ENST00000533704 VIL1P09327 827 aaKnown RBP13.2□□□□□ -0.3
CAPN1-225ENST00000533704 CHRNDQ07001 517 aa13.2□□□□□ -0.3
CAPN1-225ENST00000533704 DEFB115Q30KQ5 88 aa13.2□□□□□ -0.3
CAPN1-225ENST00000533704 EPHA10Q5JZY3 1008 aa13.2□□□□□ -0.3
CAPN1-225ENST00000533704 HELBQ8NG08 1087 aaPredicted RBP13.2□□□□□ -0.3
CAPN1-225ENST00000533704 ZNF594Q96JF6 807 aaPredicted RBP13.2□□□□□ -0.3
CAPN1-225ENST00000533704 LEMD3Q9Y2U8 911 aa13.2□□□□□ -0.3
CAPN1-225ENST00000533704 ZNF646O15015 1829 aaPredicted RBP13.19□□□□□ -0.3
CAPN1-225ENST00000533704 USP17L3A6NCW0 530 aa13.19□□□□□ -0.3
CAPN1-225ENST00000533704 USP17L4A6NCW7 530 aa13.19□□□□□ -0.3
CAPN1-225ENST00000533704 PLIN1O60240 522 aa13.19□□□□□ -0.3
CAPN1-225ENST00000533704 TAF5LO75529 589 aa13.19□□□□□ -0.3
CAPN1-225ENST00000533704 CELF2O95319 508 aaKnown RBP13.19□□□□□ -0.3
CAPN1-225ENST00000533704 KLRK1P26718 216 aa13.19□□□□□ -0.3
CAPN1-225ENST00000533704 CCDC57Q2TAC2 916 aa13.19□□□□□ -0.3
CAPN1-225ENST00000533704 KIF4BQ2VIQ3 1234 aa13.19□□□□□ -0.3
CAPN1-225ENST00000533704 RSBN1LQ6PCB5 846 aaPredicted RBP13.19□□□□□ -0.3
CAPN1-225ENST00000533704 USP17L1Q7RTZ2 530 aa13.19□□□□□ -0.3
CAPN1-225ENST00000533704 PODNQ7Z5L7 613 aa13.19□□□□□ -0.3
CAPN1-225ENST00000533704 USP48Q86UV5 1035 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms