RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 ZBTB12Q9Y330 459 aaPredicted RBP20.41■□□□□ 0.86
CHMP4A-207ENST00000533523 C6orf229H3BNL8 230 aa20.4■□□□□ 0.86
CHMP4A-207ENST00000533523 MYH3P11055 1940 aa20.4■□□□□ 0.86
CHMP4A-207ENST00000533523 CA12O43570 354 aa20.39■□□□□ 0.85
CHMP4A-207ENST00000533523 ECE2O60344 883 aa20.39■□□□□ 0.85
CHMP4A-207ENST00000533523 GPSM2P81274 684 aa20.39■□□□□ 0.85
CHMP4A-207ENST00000533523 TBC1D10BQ4KMP7 808 aaPredicted RBP20.39■□□□□ 0.85
CHMP4A-207ENST00000533523 DUSP27Q5VZP5 1158 aa20.39■□□□□ 0.85
CHMP4A-207ENST00000533523 HYPKQ9NX55 129 aa20.39■□□□□ 0.85
CHMP4A-207ENST00000533523 IRS4O14654 1257 aaPredicted RBP20.38■□□□□ 0.85
CHMP4A-207ENST00000533523 SF3B3Q15393 1217 aaKnown RBP20.38■□□□□ 0.85
CHMP4A-207ENST00000533523 SAMD7Q7Z3H4 446 aa20.38■□□□□ 0.85
CHMP4A-207ENST00000533523 USP48Q86UV5 1035 aa20.38■□□□□ 0.85
CHMP4A-207ENST00000533523 POLLQ9UGP5 575 aa20.38■□□□□ 0.85
CHMP4A-207ENST00000533523 GOLGA2Q08379 1002 aa20.37■□□□□ 0.85
CHMP4A-207ENST00000533523 DOK7Q18PE1 504 aa20.37■□□□□ 0.85
CHMP4A-207ENST00000533523 DPF2Q92785 391 aa20.37■□□□□ 0.85
CHMP4A-207ENST00000533523 EYA3Q99504 573 aa20.37■□□□□ 0.85
CHMP4A-207ENST00000533523 RTL9Q8NET4 1388 aa20.36■□□□□ 0.85
CHMP4A-207ENST00000533523 HUNKP57058 714 aa20.36■□□□□ 0.85
CHMP4A-207ENST00000533523 KRT26Q7Z3Y9 468 aa20.36■□□□□ 0.85
CHMP4A-207ENST00000533523 MBIPQ9NS73 344 aa20.36■□□□□ 0.85
CHMP4A-207ENST00000533523 ADAMTS8Q9UP79 889 aa20.36■□□□□ 0.85
CHMP4A-207ENST00000533523 RPS12P25398 132 aaKnown RBP20.35■□□□□ 0.85
CHMP4A-207ENST00000533523 RIC3Q7Z5B4 369 aa20.35■□□□□ 0.85
CHMP4A-207ENST00000533523 ADM5C9JUS6 153 aa20.34■□□□□ 0.85
CHMP4A-207ENST00000533523 NOGQ13253 232 aa20.34■□□□□ 0.85
CHMP4A-207ENST00000533523 RBM26Q5T8P6 1007 aaKnown RBP20.34■□□□□ 0.85
CHMP4A-207ENST00000533523 TBC1D16Q8TBP0 767 aa20.34■□□□□ 0.85
CHMP4A-207ENST00000533523 KCNQ5Q9NR82 932 aa20.34■□□□□ 0.85
CHMP4A-207ENST00000533523 UFL1O94874 794 aa20.33■□□□□ 0.85
CHMP4A-207ENST00000533523 RPS8P62241 208 aaKnown RBP20.33■□□□□ 0.85
CHMP4A-207ENST00000533523 KIF4BQ2VIQ3 1234 aa20.33■□□□□ 0.85
CHMP4A-207ENST00000533523 SZT2Q5T011 3432 aa20.33■□□□□ 0.84
CHMP4A-207ENST00000533523 ZNF646O15015 1829 aaPredicted RBP20.32■□□□□ 0.84
CHMP4A-207ENST00000533523 G3V3G9 751 aa20.32■□□□□ 0.84
CHMP4A-207ENST00000533523 TRIM28Q13263 835 aaKnown RBP20.32■□□□□ 0.84
CHMP4A-207ENST00000533523 DCAF8Q5TAQ9 597 aa20.32■□□□□ 0.84
CHMP4A-207ENST00000533523 ZBTB38Q8NAP3 1195 aaPredicted RBP20.32■□□□□ 0.84
CHMP4A-207ENST00000533523 DCPSQ96C86 337 aaKnown RBP20.32■□□□□ 0.84
CHMP4A-207ENST00000533523 MYD88Q99836 296 aa20.32■□□□□ 0.84
CHMP4A-207ENST00000533523 PHAXQ9H814 394 aaKnown RBP20.32■□□□□ 0.84
CHMP4A-207ENST00000533523 GBA2Q9HCG7 927 aaPredicted RBP20.32■□□□□ 0.84
CHMP4A-207ENST00000533523 SEC31BQ9NQW1 1179 aa20.32■□□□□ 0.84
CHMP4A-207ENST00000533523 ANKIB1Q9P2G1 1089 aa20.32■□□□□ 0.84
CHMP4A-207ENST00000533523 ASTN2O75129 1339 aaPredicted RBP20.31■□□□□ 0.84
CHMP4A-207ENST00000533523 HSP90B1P14625 803 aaKnown RBP20.31■□□□□ 0.84
CHMP4A-207ENST00000533523 ZC3H12CQ9C0D7 883 aaKnown RBP20.31■□□□□ 0.84
CHMP4A-207ENST00000533523 RNF186Q9NXI6 227 aa20.31■□□□□ 0.84
CHMP4A-207ENST00000533523 GGA3Q9NZ52 723 aa20.31■□□□□ 0.84
CHMP4A-207ENST00000533523 GGA1Q9UJY5 639 aa20.31■□□□□ 0.84
CHMP4A-207ENST00000533523 ELL2O00472 640 aaPredicted RBP20.3■□□□□ 0.84
CHMP4A-207ENST00000533523 KIF23Q02241 960 aaPredicted RBP20.3■□□□□ 0.84
CHMP4A-207ENST00000533523 CCDC152Q4G0S7 254 aa20.3■□□□□ 0.84
CHMP4A-207ENST00000533523 C2orf69Q8N8R5 385 aa20.3■□□□□ 0.84
CHMP4A-207ENST00000533523 CCDC85AQ96PX6 553 aaPredicted RBP20.3■□□□□ 0.84
CHMP4A-207ENST00000533523 IFT57Q9NWB7 429 aa20.3■□□□□ 0.84
CHMP4A-207ENST00000533523 RGMBQ6NW40 437 aa20.29■□□□□ 0.84
CHMP4A-207ENST00000533523 PODXL2Q9NZ53 605 aa20.29■□□□□ 0.84
CHMP4A-207ENST00000533523 PRPF38BQ5VTL8 546 aaKnown RBP20.28■□□□□ 0.84
CHMP4A-207ENST00000533523 SULF1Q8IWU6 871 aa20.28■□□□□ 0.84
CHMP4A-207ENST00000533523 JARID2Q92833 1246 aaPredicted RBP20.28■□□□□ 0.84
CHMP4A-207ENST00000533523 PAPPA2Q9BXP8 1791 aa20.28■□□□□ 0.84
CHMP4A-207ENST00000533523 TRPA1O75762 1119 aa20.27■□□□□ 0.84
CHMP4A-207ENST00000533523 PCCAP05165 728 aaPredicted RBP20.27■□□□□ 0.84
CHMP4A-207ENST00000533523 VIL1P09327 827 aaKnown RBP20.27■□□□□ 0.84
CHMP4A-207ENST00000533523 ZNF853P0CG23 659 aa20.27■□□□□ 0.84
CHMP4A-207ENST00000533523 ZNF157P51786 506 aaPredicted RBP20.27■□□□□ 0.84
CHMP4A-207ENST00000533523 GNAI1P63096 354 aa20.27■□□□□ 0.84
CHMP4A-207ENST00000533523 CALD1Q05682 793 aaKnown RBP20.27■□□□□ 0.84
CHMP4A-207ENST00000533523 CCDC191Q8NCU4 936 aa20.27■□□□□ 0.84
CHMP4A-207ENST00000533523 CWC25Q9NXE8 425 aaPredicted RBP20.27■□□□□ 0.84
CHMP4A-207ENST00000533523 SAGE1Q9NXZ1 904 aa20.27■□□□□ 0.84
CHMP4A-207ENST00000533523 APAF1O14727 1248 aa20.26■□□□□ 0.83
CHMP4A-207ENST00000533523 PDE8AO60658 829 aa20.26■□□□□ 0.83
CHMP4A-207ENST00000533523 CSRNP1Q96S65 589 aa20.26■□□□□ 0.83
CHMP4A-207ENST00000533523 ZNF609O15014 1411 aa20.26■□□□□ 0.83
CHMP4A-207ENST00000533523 XDHP47989 1333 aa20.26■□□□□ 0.83
CHMP4A-207ENST00000533523 CCER2I3L3R5 266 aa20.25■□□□□ 0.83
CHMP4A-207ENST00000533523 SLC10A3P09131 477 aa20.25■□□□□ 0.83
CHMP4A-207ENST00000533523 RSBN1LQ6PCB5 846 aaPredicted RBP20.25■□□□□ 0.83
CHMP4A-207ENST00000533523 ANKRD18AQ8IVF6 992 aa20.25■□□□□ 0.83
CHMP4A-207ENST00000533523 CCDC102AQ96A19 550 aa20.25■□□□□ 0.83
CHMP4A-207ENST00000533523 CDCA5Q96FF9 252 aa20.25■□□□□ 0.83
CHMP4A-207ENST00000533523 DDX58O95786 925 aaKnown RBP20.24■□□□□ 0.83
CHMP4A-207ENST00000533523 ANGEL2Q5VTE6 544 aaKnown RBP20.23■□□□□ 0.83
CHMP4A-207ENST00000533523 C8orf58Q8NAV2 365 aa20.23■□□□□ 0.83
CHMP4A-207ENST00000533523 AGBL3Q8NEM8 1001 aa20.23■□□□□ 0.83
CHMP4A-207ENST00000533523 METTL22Q9BUU2 404 aaPredicted RBP20.23■□□□□ 0.83
CHMP4A-207ENST00000533523 HPS5Q9UPZ3 1129 aa20.23■□□□□ 0.83
CHMP4A-207ENST00000533523 CTSWP56202 376 aa20.22■□□□□ 0.83
CHMP4A-207ENST00000533523 SCARF1Q14162 830 aa20.22■□□□□ 0.83
CHMP4A-207ENST00000533523 CCDC30Q5VVM6 783 aa20.22■□□□□ 0.83
CHMP4A-207ENST00000533523 MAP3K2Q9Y2U5 619 aa20.22■□□□□ 0.83
CHMP4A-207ENST00000533523 ZNF280AP59817 542 aaPredicted RBP20.21■□□□□ 0.83
CHMP4A-207ENST00000533523 RASAL3Q86YV0 1011 aa20.21■□□□□ 0.83
CHMP4A-207ENST00000533523 CDC5LQ99459 802 aaKnown RBP20.21■□□□□ 0.83
CHMP4A-207ENST00000533523 CACNA1FO60840 1977 aa20.21■□□□□ 0.83
CHMP4A-207ENST00000533523 RANBP2P49792 3224 aaKnown RBP20.21■□□□□ 0.83
CHMP4A-207ENST00000533523 ATP2B4P23634 1241 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms