RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 PODXL2Q9NZ53 605 aa19.71■□□□□ 0.75
CPSF1-211ENST00000533492 GGA1Q9UJY5 639 aa19.71■□□□□ 0.75
CPSF1-211ENST00000533492 H7C1D1 291 aa19.7■□□□□ 0.74
CPSF1-211ENST00000533492 GCKRQ14397 625 aa19.7■□□□□ 0.74
CPSF1-211ENST00000533492 GPR101Q96P66 508 aaPredicted RBP19.7■□□□□ 0.74
CPSF1-211ENST00000533492 CNOT7Q9UIV1 285 aaKnown RBP19.7■□□□□ 0.74
CPSF1-211ENST00000533492 COL4A1P02462 1669 aa19.7■□□□□ 0.74
CPSF1-211ENST00000533492 ECE2O60344 883 aa19.69■□□□□ 0.74
CPSF1-211ENST00000533492 LINS1Q8NG48 757 aa19.69■□□□□ 0.74
CPSF1-211ENST00000533492 PSMD14O00487 310 aa19.68■□□□□ 0.74
CPSF1-211ENST00000533492 GREM2Q9H772 168 aa19.68■□□□□ 0.74
CPSF1-211ENST00000533492 ZBTB12Q9Y330 459 aaPredicted RBP19.68■□□□□ 0.74
CPSF1-211ENST00000533492 XDHP47989 1333 aa19.68■□□□□ 0.74
CPSF1-211ENST00000533492 DPF2Q92785 391 aa19.67■□□□□ 0.74
CPSF1-211ENST00000533492 ABT1Q9ULW3 272 aaKnown RBP19.67■□□□□ 0.74
CPSF1-211ENST00000533492 CNTNAP1P78357 1384 aa19.67■□□□□ 0.74
CPSF1-211ENST00000533492 HSPA1AP0DMV8 641 aaKnown RBP19.66■□□□□ 0.74
CPSF1-211ENST00000533492 HSPA1BP0DMV9 641 aaKnown RBP19.66■□□□□ 0.74
CPSF1-211ENST00000533492 ATP2B4P23634 1241 aa19.66■□□□□ 0.74
CPSF1-211ENST00000533492 DEFB115Q30KQ5 88 aa19.66■□□□□ 0.74
CPSF1-211ENST00000533492 IFFO2Q5TF58 517 aa19.66■□□□□ 0.74
CPSF1-211ENST00000533492 MICALL2Q8IY33 904 aa19.66■□□□□ 0.74
CPSF1-211ENST00000533492 BSDC1Q9NW68 430 aaPredicted RBP19.66■□□□□ 0.74
CPSF1-211ENST00000533492 MYH3P11055 1940 aa19.66■□□□□ 0.74
CPSF1-211ENST00000533492 F6X3S4 739 aa19.65■□□□□ 0.74
CPSF1-211ENST00000533492 RPS12P25398 132 aaKnown RBP19.65■□□□□ 0.74
CPSF1-211ENST00000533492 IGHMBP2P38935 993 aaKnown RBP19.65■□□□□ 0.74
CPSF1-211ENST00000533492 ZC3H15Q8WU90 426 aaKnown RBP19.65■□□□□ 0.74
CPSF1-211ENST00000533492 PLA2G12BQ9BX93 195 aa19.65■□□□□ 0.74
CPSF1-211ENST00000533492 KCNQ5Q9NR82 932 aa19.65■□□□□ 0.74
CPSF1-211ENST00000533492 FMR1Q06787 632 aaKnown RBP eCLIP19.64■□□□□ 0.732e-7■□□□□ 9.4
CPSF1-211ENST00000533492 MINPP1Q9UNW1 487 aa19.64■□□□□ 0.73
CPSF1-211ENST00000533492 RTL9Q8NET4 1388 aa19.64■□□□□ 0.73
CPSF1-211ENST00000533492 SHTN1A0MZ66 631 aa19.63■□□□□ 0.73
CPSF1-211ENST00000533492 TRAF5O00463 557 aa19.63■□□□□ 0.73
CPSF1-211ENST00000533492 ITGA6P23229 1130 aa19.63■□□□□ 0.73
CPSF1-211ENST00000533492 VEGFBP49765 207 aa19.63■□□□□ 0.73
CPSF1-211ENST00000533492 HIRAP54198 1017 aaPredicted RBP19.63■□□□□ 0.73
CPSF1-211ENST00000533492 CASP7P55210 303 aa19.63■□□□□ 0.73
CPSF1-211ENST00000533492 TRPM4Q8TD43 1214 aa19.63■□□□□ 0.73
CPSF1-211ENST00000533492 MPHOSPH8Q99549 860 aa19.63■□□□□ 0.73
CPSF1-211ENST00000533492 PGAP2Q9UHJ9 254 aa19.63■□□□□ 0.73
CPSF1-211ENST00000533492 PCNTO95613 3336 aa19.63■□□□□ 0.73
CPSF1-211ENST00000533492 RASSF10A6NK89 507 aa19.62■□□□□ 0.73
CPSF1-211ENST00000533492 VIL1P09327 827 aaKnown RBP19.62■□□□□ 0.73
CPSF1-211ENST00000533492 BEND3Q5T5X7 828 aa19.62■□□□□ 0.73
CPSF1-211ENST00000533492 RBM26Q5T8P6 1007 aaKnown RBP19.62■□□□□ 0.73
CPSF1-211ENST00000533492 SAMD7Q7Z3H4 446 aa19.62■□□□□ 0.73
CPSF1-211ENST00000533492 GLIS2Q9BZE0 524 aaPredicted RBP19.62■□□□□ 0.73
CPSF1-211ENST00000533492 ZNF521Q96K83 1311 aa19.61■□□□□ 0.73
CPSF1-211ENST00000533492 CSF1RP07333 972 aa19.61■□□□□ 0.73
CPSF1-211ENST00000533492 FAM161AQ3B820 660 aa19.61■□□□□ 0.73
CPSF1-211ENST00000533492 TBC1D10BQ4KMP7 808 aaPredicted RBP19.61■□□□□ 0.73
CPSF1-211ENST00000533492 CDC37L1Q7L3B6 337 aa19.61■□□□□ 0.73
CPSF1-211ENST00000533492 ANKRD18BA2A2Z9 1011 aa19.6■□□□□ 0.73
CPSF1-211ENST00000533492 CCT4P50991 539 aaKnown RBP19.6■□□□□ 0.73
CPSF1-211ENST00000533492 CST9Q5W186 159 aa19.6■□□□□ 0.73
CPSF1-211ENST00000533492 SLC4A10Q6U841 1118 aa19.6■□□□□ 0.73
CPSF1-211ENST00000533492 PAXIP1Q6ZW49 1069 aaPredicted RBP19.6■□□□□ 0.73
CPSF1-211ENST00000533492 PODNQ7Z5L7 613 aa19.6■□□□□ 0.73
CPSF1-211ENST00000533492 CHMP3Q9Y3E7 222 aa19.6■□□□□ 0.73
CPSF1-211ENST00000533492 TRPM7Q96QT4 1865 aa19.59■□□□□ 0.73
CPSF1-211ENST00000533492 E9PSI1 815 aa19.59■□□□□ 0.73
CPSF1-211ENST00000533492 CELF2O95319 508 aaKnown RBP19.59■□□□□ 0.73
CPSF1-211ENST00000533492 COL13A1Q5TAT6 717 aaPredicted RBP19.59■□□□□ 0.73
CPSF1-211ENST00000533492 ANKRD2Q9GZV1 360 aa19.59■□□□□ 0.73
CPSF1-211ENST00000533492 C9orf78Q9NZ63 289 aaPredicted RBP19.59■□□□□ 0.73
CPSF1-211ENST00000533492 LEMD3Q9Y2U8 911 aa19.59■□□□□ 0.73
CPSF1-211ENST00000533492 SPEF2Q9C093 1822 aa19.58■□□□□ 0.73
CPSF1-211ENST00000533492 WTIPA6NIX2 430 aaPredicted RBP19.58■□□□□ 0.72
CPSF1-211ENST00000533492 IFIT5Q13325 482 aaKnown RBP19.58■□□□□ 0.72
CPSF1-211ENST00000533492 RSBN1LQ6PCB5 846 aaPredicted RBP19.58■□□□□ 0.72
CPSF1-211ENST00000533492 AGBL3Q8NEM8 1001 aa19.58■□□□□ 0.72
CPSF1-211ENST00000533492 ZNF408Q9H9D4 720 aa19.58■□□□□ 0.72
CPSF1-211ENST00000533492 MED23Q9ULK4 1368 aa19.57■□□□□ 0.72
CPSF1-211ENST00000533492 SCN9AQ15858 1988 aa19.57■□□□□ 0.72
CPSF1-211ENST00000533492 WDR33Q9C0J8 1336 aaKnown RBP19.57■□□□□ 0.72
CPSF1-211ENST00000533492 USP17L3A6NCW0 530 aa19.57■□□□□ 0.72
CPSF1-211ENST00000533492 USP17L4A6NCW7 530 aa19.57■□□□□ 0.72
CPSF1-211ENST00000533492 GRM8O00222 908 aa19.57■□□□□ 0.72
CPSF1-211ENST00000533492 ALDH1L1O75891 902 aa19.57■□□□□ 0.72
CPSF1-211ENST00000533492 ECE1P42892 770 aa19.57■□□□□ 0.72
CPSF1-211ENST00000533492 KCNJ4P48050 445 aa19.57■□□□□ 0.72
CPSF1-211ENST00000533492 USP17L1Q7RTZ2 530 aa19.57■□□□□ 0.72
CPSF1-211ENST00000533492 USP48Q86UV5 1035 aa19.57■□□□□ 0.72
CPSF1-211ENST00000533492 AIDAQ96BJ3 306 aa19.57■□□□□ 0.72
CPSF1-211ENST00000533492 DCPSQ96C86 337 aaKnown RBP19.57■□□□□ 0.72
CPSF1-211ENST00000533492 SRCIN1Q9C0H9 1055 aa19.57■□□□□ 0.72
CPSF1-211ENST00000533492 ZNF804BA4D1E1 1349 aa19.56■□□□□ 0.72
CPSF1-211ENST00000533492 EGFRP00533 1210 aa19.56■□□□□ 0.72
CPSF1-211ENST00000533492 FOXO4P98177 505 aa19.56■□□□□ 0.72
CPSF1-211ENST00000533492 GRM1Q13255 1194 aa19.56■□□□□ 0.72
CPSF1-211ENST00000533492 KIF4BQ2VIQ3 1234 aa19.56■□□□□ 0.72
CPSF1-211ENST00000533492 TLL2Q9Y6L7 1015 aa19.56■□□□□ 0.72
CPSF1-211ENST00000533492 CHRNDQ07001 517 aa19.55■□□□□ 0.72
CPSF1-211ENST00000533492 TAF7LQ5H9L4 462 aa19.55■□□□□ 0.72
CPSF1-211ENST00000533492 LMBR1LQ6UX01 489 aa19.55■□□□□ 0.72
CPSF1-211ENST00000533492 KRT26Q7Z3Y9 468 aa19.55■□□□□ 0.72
CPSF1-211ENST00000533492 FBXW7Q969H0 707 aa19.55■□□□□ 0.72
CPSF1-211ENST00000533492 CAPNS2Q96L46 248 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms