RNA–Protein interactions for RNA: ENST00000533196.1

SMPD1-209, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 3

Gene SMPD1, Length 425 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-209ENST00000533196 GGA1Q9UJY5 639 aa29.91■■■□□ 2.38
SMPD1-209ENST00000533196 RIMBP2O15034 1052 aa29.9■■■□□ 2.38
SMPD1-209ENST00000533196 UBE3BQ7Z3V4 1068 aa29.9■■■□□ 2.38
SMPD1-209ENST00000533196 DPF2Q92785 391 aa29.89■■■□□ 2.38
SMPD1-209ENST00000533196 DBNDD1Q9H9R9 158 aa29.89■■■□□ 2.38
SMPD1-209ENST00000533196 XDHP47989 1333 aa29.89■■■□□ 2.38
SMPD1-209ENST00000533196 ECE2O60344 883 aa29.88■■■□□ 2.37
SMPD1-209ENST00000533196 UFL1O94874 794 aa29.88■■■□□ 2.37
SMPD1-209ENST00000533196 BSDC1Q9NW68 430 aaPredicted RBP29.88■■■□□ 2.37
SMPD1-209ENST00000533196 CASP7P55210 303 aa29.87■■■□□ 2.37
SMPD1-209ENST00000533196 GREM2Q9H772 168 aa29.87■■■□□ 2.37
SMPD1-209ENST00000533196 ATP2B4P23634 1241 aa29.86■■■□□ 2.37
SMPD1-209ENST00000533196 RPS12P25398 132 aaKnown RBP29.86■■■□□ 2.37
SMPD1-209ENST00000533196 ZC3H15Q8WU90 426 aaKnown RBP29.86■■■□□ 2.37
SMPD1-209ENST00000533196 CNTNAP1P78357 1384 aa29.86■■■□□ 2.37
SMPD1-209ENST00000533196 TRPM7Q96QT4 1865 aa29.85■■■□□ 2.37
SMPD1-209ENST00000533196 H7C1D1 291 aa29.85■■■□□ 2.37
SMPD1-209ENST00000533196 PSMD14O00487 310 aa29.85■■■□□ 2.37
SMPD1-209ENST00000533196 PGAP2Q9UHJ9 254 aa29.85■■■□□ 2.37
SMPD1-209ENST00000533196 CNOT7Q9UIV1 285 aaKnown RBP29.85■■■□□ 2.37
SMPD1-209ENST00000533196 MKRN1Q9UHC7 482 aaKnown RBP29.84■■■□□ 2.37
SMPD1-209ENST00000533196 SPEF2Q9C093 1822 aa29.83■■■□□ 2.37
SMPD1-209ENST00000533196 CSF1RP07333 972 aa29.83■■■□□ 2.37
SMPD1-209ENST00000533196 DOK7Q18PE1 504 aa29.83■■■□□ 2.37
SMPD1-209ENST00000533196 SCN9AQ15858 1988 aa29.83■■■□□ 2.37
SMPD1-209ENST00000533196 G3V3G9 751 aa29.82■■■□□ 2.36
SMPD1-209ENST00000533196 IGHMBP2P38935 993 aaKnown RBP29.82■■■□□ 2.36
SMPD1-209ENST00000533196 BEND3Q5T5X7 828 aa29.82■■■□□ 2.36
SMPD1-209ENST00000533196 DCAF8Q5TAQ9 597 aa29.82■■■□□ 2.36
SMPD1-209ENST00000533196 GPR101Q96P66 508 aaPredicted RBP29.82■■■□□ 2.36
SMPD1-209ENST00000533196 PSME4Q14997 1843 aa29.82■■■□□ 2.36
SMPD1-209ENST00000533196 MICALL2Q8IY33 904 aa29.81■■■□□ 2.36
SMPD1-209ENST00000533196 MINPP1Q9UNW1 487 aa29.81■■■□□ 2.36
SMPD1-209ENST00000533196 E9PSI1 815 aa29.8■■■□□ 2.36
SMPD1-209ENST00000533196 F6X3S4 739 aa29.8■■■□□ 2.36
SMPD1-209ENST00000533196 ZBTB12Q9Y330 459 aaPredicted RBP29.8■■■□□ 2.36
SMPD1-209ENST00000533196 RASSF10A6NK89 507 aa29.79■■■□□ 2.36
SMPD1-209ENST00000533196 VIL1P09327 827 aaKnown RBP29.79■■■□□ 2.36
SMPD1-209ENST00000533196 ITGA6P23229 1130 aa29.79■■■□□ 2.36
SMPD1-209ENST00000533196 ZNF609O15014 1411 aa29.79■■■□□ 2.36
SMPD1-209ENST00000533196 MED23Q9ULK4 1368 aa29.78■■■□□ 2.36
SMPD1-209ENST00000533196 PODNQ7Z5L7 613 aa29.78■■■□□ 2.36
SMPD1-209ENST00000533196 CCER2I3L3R5 266 aa29.77■■■□□ 2.36
SMPD1-209ENST00000533196 ALDH1L1O75891 902 aa29.77■■■□□ 2.36
SMPD1-209ENST00000533196 HIRAP54198 1017 aaPredicted RBP29.77■■■□□ 2.36
SMPD1-209ENST00000533196 TRPM4Q8TD43 1214 aa29.77■■■□□ 2.36
SMPD1-209ENST00000533196 KCNQ5Q9NR82 932 aa29.77■■■□□ 2.36
SMPD1-209ENST00000533196 CCT4P50991 539 aaKnown RBP29.76■■■□□ 2.35
SMPD1-209ENST00000533196 DEFB115Q30KQ5 88 aa29.76■■■□□ 2.35
SMPD1-209ENST00000533196 FAM161AQ3B820 660 aa29.76■■■□□ 2.35
SMPD1-209ENST00000533196 MPHOSPH8Q99549 860 aa29.76■■■□□ 2.35
SMPD1-209ENST00000533196 ANKRD2Q9GZV1 360 aa29.76■■■□□ 2.35
SMPD1-209ENST00000533196 LEMD3Q9Y2U8 911 aa29.76■■■□□ 2.35
SMPD1-209ENST00000533196 PCNTO95613 3336 aa29.76■■■□□ 2.35
SMPD1-209ENST00000533196 HSPA1AP0DMV8 641 aaKnown RBP29.75■■■□□ 2.35
SMPD1-209ENST00000533196 HSPA1BP0DMV9 641 aaKnown RBP29.75■■■□□ 2.35
SMPD1-209ENST00000533196 CDC37L1Q7L3B6 337 aa29.75■■■□□ 2.35
SMPD1-209ENST00000533196 AGBL3Q8NEM8 1001 aa29.75■■■□□ 2.35
SMPD1-209ENST00000533196 ANKRD18BA2A2Z9 1011 aa29.74■■■□□ 2.35
SMPD1-209ENST00000533196 ABT1Q9ULW3 272 aaKnown RBP29.74■■■□□ 2.35
SMPD1-209ENST00000533196 SHTN1A0MZ66 631 aa29.73■■■□□ 2.35
SMPD1-209ENST00000533196 GRM8O00222 908 aa29.73■■■□□ 2.35
SMPD1-209ENST00000533196 VEGFBP49765 207 aa29.73■■■□□ 2.35
SMPD1-209ENST00000533196 IFFO2Q5TF58 517 aa29.73■■■□□ 2.35
SMPD1-209ENST00000533196 SRCIN1Q9C0H9 1055 aa29.73■■■□□ 2.35
SMPD1-209ENST00000533196 TRAF5O00463 557 aa29.72■■■□□ 2.35
SMPD1-209ENST00000533196 FOXO4P98177 505 aa29.72■■■□□ 2.35
SMPD1-209ENST00000533196 SLFN5Q08AF3 891 aa29.72■■■□□ 2.35
SMPD1-209ENST00000533196 RSBN1LQ6PCB5 846 aaPredicted RBP29.72■■■□□ 2.35
SMPD1-209ENST00000533196 SAMD7Q7Z3H4 446 aa29.72■■■□□ 2.35
SMPD1-209ENST00000533196 IFIT5Q13325 482 aaKnown RBP29.71■■■□□ 2.35
SMPD1-209ENST00000533196 CST9Q5W186 159 aa29.71■■■□□ 2.35
SMPD1-209ENST00000533196 GLIS2Q9BZE0 524 aaPredicted RBP29.71■■■□□ 2.35
SMPD1-209ENST00000533196 C9orf78Q9NZ63 289 aaPredicted RBP29.71■■■□□ 2.35
SMPD1-209ENST00000533196 POLR2AP24928 1970 aaKnown RBP29.71■■■□□ 2.35
SMPD1-209ENST00000533196 FMR1Q06787 632 aaKnown RBP eCLIP29.7■■■□□ 2.35
SMPD1-209ENST00000533196 MRPL50Q8N5N7 158 aaKnown RBP29.7■■■□□ 2.35
SMPD1-209ENST00000533196 PTPRCP08575 1304 aa29.7■■■□□ 2.34
SMPD1-209ENST00000533196 USP17L3A6NCW0 530 aa29.69■■■□□ 2.34
SMPD1-209ENST00000533196 USP17L4A6NCW7 530 aa29.69■■■□□ 2.34
SMPD1-209ENST00000533196 TBC1D10BQ4KMP7 808 aaPredicted RBP29.69■■■□□ 2.34
SMPD1-209ENST00000533196 SLC4A10Q6U841 1118 aa29.69■■■□□ 2.34
SMPD1-209ENST00000533196 USP17L1Q7RTZ2 530 aa29.69■■■□□ 2.34
SMPD1-209ENST00000533196 COA1Q9GZY4 146 aa29.69■■■□□ 2.34
SMPD1-209ENST00000533196 TLL2Q9Y6L7 1015 aa29.69■■■□□ 2.34
SMPD1-209ENST00000533196 ZNF804BA4D1E1 1349 aa29.69■■■□□ 2.34
SMPD1-209ENST00000533196 CELF2O95319 508 aaKnown RBP29.67■■■□□ 2.34
SMPD1-209ENST00000533196 ZNF280AP59817 542 aaPredicted RBP29.67■■■□□ 2.34
SMPD1-209ENST00000533196 KIF4BQ2VIQ3 1234 aa29.67■■■□□ 2.34
SMPD1-209ENST00000533196 GMLQ99445 158 aa29.67■■■□□ 2.34
SMPD1-209ENST00000533196 WDR33Q9C0J8 1336 aaKnown RBP29.67■■■□□ 2.34
SMPD1-209ENST00000533196 ECE1P42892 770 aa29.66■■■□□ 2.34
SMPD1-209ENST00000533196 CHRNDQ07001 517 aa29.66■■■□□ 2.34
SMPD1-209ENST00000533196 LMBR1LQ6UX01 489 aa29.66■■■□□ 2.34
SMPD1-209ENST00000533196 CHMP3Q9Y3E7 222 aa29.66■■■□□ 2.34
SMPD1-209ENST00000533196 WTIPA6NIX2 430 aaPredicted RBP29.65■■■□□ 2.34
SMPD1-209ENST00000533196 CCDC57Q2TAC2 916 aa29.65■■■□□ 2.34
SMPD1-209ENST00000533196 ALDH1L2Q3SY69 923 aa29.65■■■□□ 2.34
SMPD1-209ENST00000533196 DCPSQ96C86 337 aaKnown RBP29.65■■■□□ 2.34
SMPD1-209ENST00000533196 HHIPL1Q96JK4 782 aa29.65■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 135.3 ms