RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 WASHC4Q2M389 1173 aa24.97■■□□□ 1.59
CPSF1-209ENST00000532725 DUOX1Q9NRD9 1551 aa24.97■■□□□ 1.59
CPSF1-209ENST00000532725 XDHP47989 1333 aa24.96■■□□□ 1.59
CPSF1-209ENST00000532725 KIF3CO14782 793 aa24.96■■□□□ 1.59
CPSF1-209ENST00000532725 DDNO94850 711 aaPredicted RBP24.96■■□□□ 1.59
CPSF1-209ENST00000532725 ZNF594Q96JF6 807 aaPredicted RBP24.96■■□□□ 1.59
CPSF1-209ENST00000532725 RRAGCQ9HB90 399 aa24.96■■□□□ 1.59
CPSF1-209ENST00000532725 GGA1Q9UJY5 639 aa24.96■■□□□ 1.59
CPSF1-209ENST00000532725 ZNF541Q9H0D2 1346 aa24.95■■□□□ 1.58
CPSF1-209ENST00000532725 WTIPA6NIX2 430 aaPredicted RBP24.95■■□□□ 1.58
CPSF1-209ENST00000532725 UBTFL1P0CB47 393 aaPredicted RBP24.95■■□□□ 1.58
CPSF1-209ENST00000532725 NIM1KQ8IY84 436 aa24.95■■□□□ 1.58
CPSF1-209ENST00000532725 MEIS3Q99687 375 aa24.95■■□□□ 1.58
CPSF1-209ENST00000532725 RCAN3Q9UKA8 241 aa24.95■■□□□ 1.58
CPSF1-209ENST00000532725 TIAM2Q8IVF5 1701 aa24.95■■□□□ 1.58
CPSF1-209ENST00000532725 POTECB2RU33 542 aa24.94■■□□□ 1.58
CPSF1-209ENST00000532725 UFL1O94874 794 aa24.94■■□□□ 1.58
CPSF1-209ENST00000532725 ATP2B4P23634 1241 aa24.94■■□□□ 1.58
CPSF1-209ENST00000532725 TMEM57Q8N5G2 664 aa24.94■■□□□ 1.58
CPSF1-209ENST00000532725 YTHDC1Q96MU7 727 aaKnown RBP24.94■■□□□ 1.58
CPSF1-209ENST00000532725 GPR101Q96P66 508 aaPredicted RBP24.94■■□□□ 1.58
CPSF1-209ENST00000532725 EYA3Q99504 573 aa24.94■■□□□ 1.58
CPSF1-209ENST00000532725 ZNRF3Q9ULT6 936 aa24.94■■□□□ 1.58
CPSF1-209ENST00000532725 LTBP1Q14766 1721 aa24.93■■□□□ 1.58
CPSF1-209ENST00000532725 RIMBP2O15034 1052 aa24.93■■□□□ 1.58
CPSF1-209ENST00000532725 DZIP1LQ8IYY4 767 aaKnown RBP24.93■■□□□ 1.58
CPSF1-209ENST00000532725 ANKRD2Q9GZV1 360 aa24.93■■□□□ 1.58
CPSF1-209ENST00000532725 HDAC5Q9UQL6 1122 aa24.93■■□□□ 1.58
CPSF1-209ENST00000532725 RLBP1P12271 317 aa24.92■■□□□ 1.58
CPSF1-209ENST00000532725 EIF6P56537 245 aaKnown RBP24.92■■□□□ 1.58
CPSF1-209ENST00000532725 CHRNDQ07001 517 aa24.92■■□□□ 1.58
CPSF1-209ENST00000532725 LDHAL6AQ6ZMR3 332 aa24.92■■□□□ 1.58
CPSF1-209ENST00000532725 ZC3H12CQ9C0D7 883 aaKnown RBP24.92■■□□□ 1.58
CPSF1-209ENST00000532725 GNAI3P08754 354 aa24.91■■□□□ 1.58
CPSF1-209ENST00000532725 TAF7LQ5H9L4 462 aa24.91■■□□□ 1.58
CPSF1-209ENST00000532725 LEMD3Q9Y2U8 911 aa24.91■■□□□ 1.58
CPSF1-209ENST00000532725 LRRFIP2Q9Y608 721 aaKnown RBP24.91■■□□□ 1.58
CPSF1-209ENST00000532725 VEGFAP15692 232 aaPredicted RBP24.9■■□□□ 1.58
CPSF1-209ENST00000532725 CXCL9Q07325 125 aa24.9■■□□□ 1.58
CPSF1-209ENST00000532725 GPC2Q8N158 579 aa24.9■■□□□ 1.58
CPSF1-209ENST00000532725 L3MBTL3Q96JM7 780 aaPredicted RBP24.9■■□□□ 1.58
CPSF1-209ENST00000532725 PUS3Q9BZE2 481 aaKnown RBP24.9■■□□□ 1.58
CPSF1-209ENST00000532725 YDJCA8MPS7 323 aa24.89■■□□□ 1.58
CPSF1-209ENST00000532725 RFX5P48382 616 aaPredicted RBP24.89■■□□□ 1.58
CPSF1-209ENST00000532725 FTSJ3Q8IY81 847 aaKnown RBP24.89■■□□□ 1.58
CPSF1-209ENST00000532725 RIPOR2Q9Y4F9 1068 aa24.89■■□□□ 1.58
CPSF1-209ENST00000532725 DOK7Q18PE1 504 aa24.88■■□□□ 1.57
CPSF1-209ENST00000532725 HELBQ8NG08 1087 aaPredicted RBP24.88■■□□□ 1.57
CPSF1-209ENST00000532725 DBNDD1Q9H9R9 158 aa24.88■■□□□ 1.57
CPSF1-209ENST00000532725 CNNM1Q9NRU3 951 aa24.88■■□□□ 1.57
CPSF1-209ENST00000532725 TAF5LO75529 589 aa24.87■■□□□ 1.57
CPSF1-209ENST00000532725 ZNF804BA4D1E1 1349 aa24.86■■□□□ 1.57
CPSF1-209ENST00000532725 SPEF2Q9C093 1822 aa24.86■■□□□ 1.57
CPSF1-209ENST00000532725 KLHDC4Q8TBB5 520 aa24.86■■□□□ 1.57
CPSF1-209ENST00000532725 GJA3Q9Y6H8 435 aa24.86■■□□□ 1.57
CPSF1-209ENST00000532725 WDR90Q96KV7 1748 aa24.86■■□□□ 1.57
CPSF1-209ENST00000532725 ZBTB7BO15156 539 aaPredicted RBP24.85■■□□□ 1.57
CPSF1-209ENST00000532725 ECE2O60344 883 aa24.85■■□□□ 1.57
CPSF1-209ENST00000532725 RAD17O75943 681 aa24.85■■□□□ 1.57
CPSF1-209ENST00000532725 PTPN12Q05209 780 aaKnown RBP24.85■■□□□ 1.57
CPSF1-209ENST00000532725 LRRC24Q50LG9 513 aa24.85■■□□□ 1.57
CPSF1-209ENST00000532725 TXNRD3Q86VQ6 643 aa24.85■■□□□ 1.57
CPSF1-209ENST00000532725 PANK1Q8TE04 598 aa24.85■■□□□ 1.57
CPSF1-209ENST00000532725 KCNQ5Q9NR82 932 aa24.85■■□□□ 1.57
CPSF1-209ENST00000532725 SNAP23O00161 211 aa24.84■■□□□ 1.57
CPSF1-209ENST00000532725 PLIN1O60240 522 aa24.84■■□□□ 1.57
CPSF1-209ENST00000532725 TOMM70O94826 608 aa24.84■■□□□ 1.57
CPSF1-209ENST00000532725 GNAI2P04899 355 aa24.84■■□□□ 1.57
CPSF1-209ENST00000532725 CIAPIN1Q6FI81 312 aa24.84■■□□□ 1.57
CPSF1-209ENST00000532725 MED23Q9ULK4 1368 aa24.83■■□□□ 1.57
CPSF1-209ENST00000532725 MS4A1P11836 297 aa24.83■■□□□ 1.57
CPSF1-209ENST00000532725 TNIP1Q15025 636 aa24.83■■□□□ 1.57
CPSF1-209ENST00000532725 ITPRIPQ8IWB1 547 aa24.83■■□□□ 1.57
CPSF1-209ENST00000532725 KLRK1P26718 216 aa24.82■■□□□ 1.56
CPSF1-209ENST00000532725 C1QTNF8P60827 252 aa24.82■■□□□ 1.56
CPSF1-209ENST00000532725 MTX1Q13505 466 aa24.82■■□□□ 1.56
CPSF1-209ENST00000532725 C15orf52Q6ZUT6 534 aaKnown RBP24.82■■□□□ 1.56
CPSF1-209ENST00000532725 MROH5Q6ZUA9 1318 aa24.82■■□□□ 1.56
CPSF1-209ENST00000532725 IRS2Q9Y4H2 1338 aa24.82■■□□□ 1.56
CPSF1-209ENST00000532725 IQCA1LA6NCM1 817 aa24.81■■□□□ 1.56
CPSF1-209ENST00000532725 G3V3G9 751 aa24.81■■□□□ 1.56
CPSF1-209ENST00000532725 KCNJ4P48050 445 aa24.81■■□□□ 1.56
CPSF1-209ENST00000532725 DCAF8Q5TAQ9 597 aa24.81■■□□□ 1.56
CPSF1-209ENST00000532725 PODNQ7Z5L7 613 aa24.81■■□□□ 1.56
CPSF1-209ENST00000532725 C16orf71Q8IYS4 520 aaPredicted RBP24.81■■□□□ 1.56
CPSF1-209ENST00000532725 EYA2O00167 538 aa24.8■■□□□ 1.56
CPSF1-209ENST00000532725 PSMD14O00487 310 aa24.8■■□□□ 1.56
CPSF1-209ENST00000532725 SCNN1DP51172 638 aa24.8■■□□□ 1.56
CPSF1-209ENST00000532725 TAF1DQ9H5J8 278 aaPredicted RBP24.8■■□□□ 1.56
CPSF1-209ENST00000532725 HACL1Q9UJ83 578 aa24.8■■□□□ 1.56
CPSF1-209ENST00000532725 UBE4AQ14139 1066 aa24.79■■□□□ 1.56
CPSF1-209ENST00000532725 ATG9AQ7Z3C6 839 aa24.79■■□□□ 1.56
CPSF1-209ENST00000532725 RBM46Q8TBY0 533 aaKnown RBP24.79■■□□□ 1.56
CPSF1-209ENST00000532725 COA1Q9GZY4 146 aa24.79■■□□□ 1.56
CPSF1-209ENST00000532725 VIL1P09327 827 aaKnown RBP24.78■■□□□ 1.56
CPSF1-209ENST00000532725 EPS15P42566 896 aa24.78■■□□□ 1.56
CPSF1-209ENST00000532725 VGLL2Q8N8G2 317 aa24.78■■□□□ 1.56
CPSF1-209ENST00000532725 COPRSQ9NQ92 184 aa24.78■■□□□ 1.56
CPSF1-209ENST00000532725 FBXO3Q9UK99 471 aa24.78■■□□□ 1.56
CPSF1-209ENST00000532725 SRGAP3O43295 1099 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms