RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 DOK7Q18PE1 504 aa21.88■■□□□ 1.09
PHRF1-204ENST00000532550 USP50Q70EL3 339 aaPredicted RBP21.88■■□□□ 1.09
PHRF1-204ENST00000532550 BSDC1Q9NW68 430 aaPredicted RBP21.88■■□□□ 1.09
PHRF1-204ENST00000532550 GPRC5DQ9NZD1 345 aa21.88■■□□□ 1.09
PHRF1-204ENST00000532550 DUOX1Q9NRD9 1551 aa21.87■■□□□ 1.09
PHRF1-204ENST00000532550 XDHP47989 1333 aa21.87■■□□□ 1.09
PHRF1-204ENST00000532550 IGHMBP2P38935 993 aaKnown RBP21.87■■□□□ 1.09
PHRF1-204ENST00000532550 SLC4A10Q6U841 1118 aa21.87■■□□□ 1.09
PHRF1-204ENST00000532550 CNTROBQ8N137 903 aa21.87■■□□□ 1.09
PHRF1-204ENST00000532550 GPR101Q96P66 508 aaPredicted RBP21.87■■□□□ 1.09
PHRF1-204ENST00000532550 RTL9Q8NET4 1388 aa21.87■■□□□ 1.09
PHRF1-204ENST00000532550 ECE2O60344 883 aa21.86■■□□□ 1.09
PHRF1-204ENST00000532550 ITGBL1O95965 494 aaPredicted RBP21.86■■□□□ 1.09
PHRF1-204ENST00000532550 CSF1RP07333 972 aa21.86■■□□□ 1.09
PHRF1-204ENST00000532550 ATP2B4P23634 1241 aa21.86■■□□□ 1.09
PHRF1-204ENST00000532550 MAP1SQ66K74 1059 aaPredicted RBP21.86■■□□□ 1.09
PHRF1-204ENST00000532550 CDCA7LQ96GN5 454 aa21.86■■□□□ 1.09
PHRF1-204ENST00000532550 ADARB2Q9NS39 739 aaKnown RBP21.86■■□□□ 1.09
PHRF1-204ENST00000532550 ITGA6P23229 1130 aa21.85■■□□□ 1.09
PHRF1-204ENST00000532550 MRPL50Q8N5N7 158 aaKnown RBP21.85■■□□□ 1.09
PHRF1-204ENST00000532550 SRCIN1Q9C0H9 1055 aa21.85■■□□□ 1.09
PHRF1-204ENST00000532550 C9orf78Q9NZ63 289 aaPredicted RBP21.85■■□□□ 1.09
PHRF1-204ENST00000532550 MINPP1Q9UNW1 487 aa21.85■■□□□ 1.09
PHRF1-204ENST00000532550 PASKQ96RG2 1323 aa21.84■■□□□ 1.09
PHRF1-204ENST00000532550 H7C1D1 291 aa21.84■■□□□ 1.09
PHRF1-204ENST00000532550 ALDH1L1O75891 902 aa21.84■■□□□ 1.09
PHRF1-204ENST00000532550 MPHOSPH8Q99549 860 aa21.84■■□□□ 1.09
PHRF1-204ENST00000532550 CREBZFQ9NS37 354 aa21.84■■□□□ 1.09
PHRF1-204ENST00000532550 CNOT7Q9UIV1 285 aaKnown RBP21.84■■□□□ 1.09
PHRF1-204ENST00000532550 LTBP1Q14766 1721 aa21.83■■□□□ 1.09
PHRF1-204ENST00000532550 GRM8O00222 908 aa21.83■■□□□ 1.09
PHRF1-204ENST00000532550 PSMD14O00487 310 aa21.83■■□□□ 1.09
PHRF1-204ENST00000532550 FAM161AQ3B820 660 aa21.83■■□□□ 1.09
PHRF1-204ENST00000532550 ANKRD18BA2A2Z9 1011 aa21.82■■□□□ 1.08
PHRF1-204ENST00000532550 DIEXFQ68CQ4 756 aaKnown RBP21.82■■□□□ 1.08
PHRF1-204ENST00000532550 SSH1Q8WYL5 1049 aa21.82■■□□□ 1.08
PHRF1-204ENST00000532550 DPF2Q92785 391 aa21.82■■□□□ 1.08
PHRF1-204ENST00000532550 KCNQ5Q9NR82 932 aa21.82■■□□□ 1.08
PHRF1-204ENST00000532550 ZBTB12Q9Y330 459 aaPredicted RBP21.82■■□□□ 1.08
PHRF1-204ENST00000532550 CHMP3Q9Y3E7 222 aa21.82■■□□□ 1.08
PHRF1-204ENST00000532550 FOXO4P98177 505 aa21.81■■□□□ 1.08
PHRF1-204ENST00000532550 TRMT2AQ8IZ69 625 aaKnown RBP21.81■■□□□ 1.08
PHRF1-204ENST00000532550 ANKRD2Q9GZV1 360 aa21.81■■□□□ 1.08
PHRF1-204ENST00000532550 ADAMTSL1Q8N6G6 1762 aa21.81■■□□□ 1.08
PHRF1-204ENST00000532550 PTPRCP08575 1304 aa21.8■■□□□ 1.08
PHRF1-204ENST00000532550 TMEM88BA6NKF7 163 aa21.8■■□□□ 1.08
PHRF1-204ENST00000532550 CCT4P50991 539 aaKnown RBP21.8■■□□□ 1.08
PHRF1-204ENST00000532550 IFIT5Q13325 482 aaKnown RBP21.8■■□□□ 1.08
PHRF1-204ENST00000532550 RPS12P25398 132 aaKnown RBP21.79■■□□□ 1.08
PHRF1-204ENST00000532550 ALDH1L2Q3SY69 923 aa21.79■■□□□ 1.08
PHRF1-204ENST00000532550 LMBR1LQ6UX01 489 aa21.79■■□□□ 1.08
PHRF1-204ENST00000532550 MICALL2Q8IY33 904 aa21.79■■□□□ 1.08
PHRF1-204ENST00000532550 JMYQ8N9B5 988 aa21.79■■□□□ 1.08
PHRF1-204ENST00000532550 LEMD3Q9Y2U8 911 aa21.79■■□□□ 1.08
PHRF1-204ENST00000532550 VIL1P09327 827 aaKnown RBP21.78■■□□□ 1.08
PHRF1-204ENST00000532550 PODNQ7Z5L7 613 aa21.78■■□□□ 1.08
PHRF1-204ENST00000532550 SPEF2Q9C093 1822 aa21.78■■□□□ 1.08
PHRF1-204ENST00000532550 WTIPA6NIX2 430 aaPredicted RBP21.77■■□□□ 1.08
PHRF1-204ENST00000532550 CT47B1P0C2W7 299 aaPredicted RBP21.77■■□□□ 1.08
PHRF1-204ENST00000532550 CCDC57Q2TAC2 916 aa21.77■■□□□ 1.08
PHRF1-204ENST00000532550 MIER1Q8N108 512 aa21.77■■□□□ 1.08
PHRF1-204ENST00000532550 ZC3H15Q8WU90 426 aaKnown RBP21.77■■□□□ 1.08
PHRF1-204ENST00000532550 SHTN1A0MZ66 631 aa21.76■■□□□ 1.07
PHRF1-204ENST00000532550 HIRAP54198 1017 aaPredicted RBP21.76■■□□□ 1.07
PHRF1-204ENST00000532550 TAF7LQ5H9L4 462 aa21.76■■□□□ 1.07
PHRF1-204ENST00000532550 EPHA10Q5JZY3 1008 aa21.76■■□□□ 1.07
PHRF1-204ENST00000532550 SMC4Q9NTJ3 1288 aa21.76■■□□□ 1.07
PHRF1-204ENST00000532550 MKRN1Q9UHC7 482 aaKnown RBP21.76■■□□□ 1.07
PHRF1-204ENST00000532550 MED23Q9ULK4 1368 aa21.75■■□□□ 1.07
PHRF1-204ENST00000532550 KCNJ4P48050 445 aa21.75■■□□□ 1.07
PHRF1-204ENST00000532550 CHRNDQ07001 517 aa21.75■■□□□ 1.07
PHRF1-204ENST00000532550 TRPM4Q8TD43 1214 aa21.75■■□□□ 1.07
PHRF1-204ENST00000532550 PGAP2Q9UHJ9 254 aa21.75■■□□□ 1.07
PHRF1-204ENST00000532550 ZNF804BA4D1E1 1349 aa21.75■■□□□ 1.07
PHRF1-204ENST00000532550 USP17L3A6NCW0 530 aa21.74■■□□□ 1.07
PHRF1-204ENST00000532550 USP17L4A6NCW7 530 aa21.74■■□□□ 1.07
PHRF1-204ENST00000532550 NBPF7P0C2Y1 421 aaPredicted RBP21.74■■□□□ 1.07
PHRF1-204ENST00000532550 RBM26Q5T8P6 1007 aaKnown RBP21.74■■□□□ 1.07
PHRF1-204ENST00000532550 USP17L1Q7RTZ2 530 aa21.74■■□□□ 1.07
PHRF1-204ENST00000532550 SAMD7Q7Z3H4 446 aa21.74■■□□□ 1.07
PHRF1-204ENST00000532550 TBC1D10BQ4KMP7 808 aaPredicted RBP21.73■■□□□ 1.07
PHRF1-204ENST00000532550 RSBN1LQ6PCB5 846 aaPredicted RBP21.73■■□□□ 1.07
PHRF1-204ENST00000532550 LDHAL6AQ6ZMR3 332 aa21.73■■□□□ 1.07
PHRF1-204ENST00000532550 AGBL3Q8NEM8 1001 aa21.73■■□□□ 1.07
PHRF1-204ENST00000532550 SUCLG2Q96I99 432 aa21.73■■□□□ 1.07
PHRF1-204ENST00000532550 COA1Q9GZY4 146 aa21.73■■□□□ 1.07
PHRF1-204ENST00000532550 SCN9AQ15858 1988 aa21.73■■□□□ 1.07
PHRF1-204ENST00000532550 TRAF5O00463 557 aa21.72■■□□□ 1.07
PHRF1-204ENST00000532550 CDC37L1Q7L3B6 337 aa21.72■■□□□ 1.07
PHRF1-204ENST00000532550 ZNF594Q96JF6 807 aaPredicted RBP21.72■■□□□ 1.07
PHRF1-204ENST00000532550 ABT1Q9ULW3 272 aaKnown RBP21.72■■□□□ 1.07
PHRF1-204ENST00000532550 UTYO14607 1347 aa21.72■■□□□ 1.07
PHRF1-204ENST00000532550 TAF5LO75529 589 aa21.71■■□□□ 1.07
PHRF1-204ENST00000532550 FMR1Q06787 632 aaKnown RBP eCLIP21.71■■□□□ 1.07
PHRF1-204ENST00000532550 DEFB115Q30KQ5 88 aa21.71■■□□□ 1.07
PHRF1-204ENST00000532550 TXNRD3Q86VQ6 643 aa21.71■■□□□ 1.07
PHRF1-204ENST00000532550 HELBQ8NG08 1087 aaPredicted RBP21.71■■□□□ 1.07
PHRF1-204ENST00000532550 GLIS2Q9BZE0 524 aaPredicted RBP21.71■■□□□ 1.07
PHRF1-204ENST00000532550 CNNM1Q9NRU3 951 aa21.71■■□□□ 1.07
PHRF1-204ENST00000532550 FBXW7Q969H0 707 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms