RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 NASPP49321 788 aaPredicted RBP13.12□□□□□ -0.31
TRIM3-211ENST00000532542 PUM3Q15397 648 aaKnown RBP13.12□□□□□ -0.31
TRIM3-211ENST00000532542 SLC9C2Q5TAH2 1124 aa13.12□□□□□ -0.31
TRIM3-211ENST00000532542 UTYO14607 1347 aa13.12□□□□□ -0.31
TRIM3-211ENST00000532542 CCDC73Q6ZRK6 1079 aa13.12□□□□□ -0.31
TRIM3-211ENST00000532542 SLC27A2O14975 620 aa13.11□□□□□ -0.31
TRIM3-211ENST00000532542 KLHL40Q2TBA0 621 aa13.11□□□□□ -0.31
TRIM3-211ENST00000532542 TLR7Q9NYK1 1049 aaKnown RBP13.11□□□□□ -0.31
TRIM3-211ENST00000532542 PALD1Q9ULE6 856 aa13.11□□□□□ -0.31
TRIM3-211ENST00000532542 CRKLP46109 303 aaKnown RBP13.11□□□□□ -0.31
TRIM3-211ENST00000532542 LRRC24Q50LG9 513 aa13.11□□□□□ -0.31
TRIM3-211ENST00000532542 HELBQ8NG08 1087 aaPredicted RBP13.11□□□□□ -0.31
TRIM3-211ENST00000532542 CCNL1Q9UK58 526 aaPredicted RBP13.11□□□□□ -0.31
TRIM3-211ENST00000532542 MROH5Q6ZUA9 1318 aa13.11□□□□□ -0.31
TRIM3-211ENST00000532542 CCDC69A6NI79 296 aa13.1□□□□□ -0.31
TRIM3-211ENST00000532542 NLRP10Q86W26 655 aa13.1□□□□□ -0.31
TRIM3-211ENST00000532542 NCOA7Q8NI08 942 aa13.1□□□□□ -0.31
TRIM3-211ENST00000532542 DDX11Q96FC9 970 aa13.1□□□□□ -0.31
TRIM3-211ENST00000532542 LSG1Q9H089 658 aaKnown RBP13.1□□□□□ -0.31
TRIM3-211ENST00000532542 ANTXR1Q9H6X2 564 aa13.1□□□□□ -0.31
TRIM3-211ENST00000532542 CFAP45Q9UL16 551 aa13.1□□□□□ -0.31
TRIM3-211ENST00000532542 TRIM28Q13263 835 aaKnown RBP13.1□□□□□ -0.31
TRIM3-211ENST00000532542 GRPEL1Q9HAV7 217 aa13.1□□□□□ -0.31
TRIM3-211ENST00000532542 LTN1O94822 1766 aa13.1□□□□□ -0.31
TRIM3-211ENST00000532542 COL5A2P05997 1499 aaPredicted RBP13.1□□□□□ -0.31
TRIM3-211ENST00000532542 GNPATO15228 680 aa13.1□□□□□ -0.31
TRIM3-211ENST00000532542 RABL6Q3YEC7 729 aaPredicted RBP13.1□□□□□ -0.31
TRIM3-211ENST00000532542 DRC7Q8IY82 874 aa13.1□□□□□ -0.31
TRIM3-211ENST00000532542 LPIN2Q92539 896 aa13.1□□□□□ -0.31
TRIM3-211ENST00000532542 BRF1Q92994 677 aa13.1□□□□□ -0.31
TRIM3-211ENST00000532542 TCEANC2Q96MN5 208 aa13.1□□□□□ -0.31
TRIM3-211ENST00000532542 ZSCAN22P10073 491 aaPredicted RBP13.1□□□□□ -0.31
TRIM3-211ENST00000532542 EDC3Q96F86 508 aaKnown RBP13.1□□□□□ -0.31
TRIM3-211ENST00000532542 A0A0D9SFI3 127 aa13.09□□□□□ -0.31
TRIM3-211ENST00000532542 XBP1P17861 261 aa13.09□□□□□ -0.31
TRIM3-211ENST00000532542 MCM5P33992 734 aa13.09□□□□□ -0.31
TRIM3-211ENST00000532542 ISCA1Q9BUE6 129 aa13.09□□□□□ -0.31
TRIM3-211ENST00000532542 ANKIB1Q9P2G1 1089 aa13.09□□□□□ -0.31
TRIM3-211ENST00000532542 HAND2P61296 217 aa13.09□□□□□ -0.31
TRIM3-211ENST00000532542 NECAB1Q8N987 351 aa13.09□□□□□ -0.31
TRIM3-211ENST00000532542 UBAC1Q9BSL1 405 aa13.09□□□□□ -0.31
TRIM3-211ENST00000532542 RNF41Q9H4P4 317 aaPredicted RBP13.09□□□□□ -0.31
TRIM3-211ENST00000532542 NDUFB9Q9Y6M9 179 aa13.09□□□□□ -0.31
TRIM3-211ENST00000532542 PTH1RQ03431 593 aa13.09□□□□□ -0.31
TRIM3-211ENST00000532542 CHAF1AQ13111 956 aaPredicted RBP13.09□□□□□ -0.31
TRIM3-211ENST00000532542 FERMT3Q86UX7 667 aa13.09□□□□□ -0.31
TRIM3-211ENST00000532542 RPGRQ92834 1020 aaKnown RBP13.09□□□□□ -0.31
TRIM3-211ENST00000532542 SCAND2PQ9GZW5 306 aaPredicted RBP13.09□□□□□ -0.31
TRIM3-211ENST00000532542 NRDCO43847 1150 aa13.08□□□□□ -0.31
TRIM3-211ENST00000532542 DNTTIP2Q5QJE6 756 aaKnown RBP13.08□□□□□ -0.31
TRIM3-211ENST00000532542 DHX32Q7L7V1 743 aaKnown RBP13.08□□□□□ -0.31
TRIM3-211ENST00000532542 TRIM22Q8IYM9 498 aa13.08□□□□□ -0.31
TRIM3-211ENST00000532542 APPBP2Q92624 585 aa13.08□□□□□ -0.31
TRIM3-211ENST00000532542 USP42Q9H9J4 1324 aaKnown RBP13.08□□□□□ -0.31
TRIM3-211ENST00000532542 CYP19A1P11511 503 aaPredicted RBP13.08□□□□□ -0.32
TRIM3-211ENST00000532542 RPS6KB1P23443 525 aa13.08□□□□□ -0.32
TRIM3-211ENST00000532542 Q6ZUG5 572 aa13.08□□□□□ -0.32
TRIM3-211ENST00000532542 FBXW7Q969H0 707 aa13.08□□□□□ -0.32
TRIM3-211ENST00000532542 SPATA32Q96LK8 384 aa13.08□□□□□ -0.32
TRIM3-211ENST00000532542 TSPY26PQ9H489 355 aa13.08□□□□□ -0.32
TRIM3-211ENST00000532542 CD2BP2O95400 341 aaKnown RBP13.08□□□□□ -0.32
TRIM3-211ENST00000532542 CPA1P15085 419 aa13.08□□□□□ -0.32
TRIM3-211ENST00000532542 TPM4P67936 248 aa13.08□□□□□ -0.32
TRIM3-211ENST00000532542 KIAA2012Q0VF49 1180 aa13.08□□□□□ -0.32
TRIM3-211ENST00000532542 CCDC129Q6ZRS4 1044 aa13.08□□□□□ -0.32
TRIM3-211ENST00000532542 MAP4K1Q92918 833 aa13.08□□□□□ -0.32
TRIM3-211ENST00000532542 PUS3Q9BZE2 481 aaKnown RBP13.08□□□□□ -0.32
TRIM3-211ENST00000532542 GREM2Q9H772 168 aa13.07□□□□□ -0.32
TRIM3-211ENST00000532542 SASS6Q6UVJ0 657 aa13.07□□□□□ -0.32
TRIM3-211ENST00000532542 TICAM2Q86XR7 235 aa13.07□□□□□ -0.32
TRIM3-211ENST00000532542 TRAPPC3LQ5T215 181 aa13.07□□□□□ -0.32
TRIM3-211ENST00000532542 DSCC1Q9BVC3 393 aa13.07□□□□□ -0.32
TRIM3-211ENST00000532542 PALLDQ8WX93 1383 aa13.06□□□□□ -0.32
TRIM3-211ENST00000532542 GOLGA8BA8MQT2 603 aa13.06□□□□□ -0.32
TRIM3-211ENST00000532542 ZSWIM6Q9HCJ5 1215 aa13.06□□□□□ -0.32
TRIM3-211ENST00000532542 SPATA31A1Q5TZJ5 1347 aa13.06□□□□□ -0.32
TRIM3-211ENST00000532542 GOLGA6L19H0YKK7 550 aa13.06□□□□□ -0.32
TRIM3-211ENST00000532542 ZAP70P43403 619 aa13.06□□□□□ -0.32
TRIM3-211ENST00000532542 CCT2P78371 535 aaKnown RBP13.06□□□□□ -0.32
TRIM3-211ENST00000532542 ANKRD2Q9GZV1 360 aa13.06□□□□□ -0.32
TRIM3-211ENST00000532542 CDHR2Q9BYE9 1310 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 MINDY4BA8MYZ0 360 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 PDE8BO95263 885 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 GNAT2P19087 354 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 ST5P78524 1137 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 STK38Q15208 465 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 HLFQ16534 295 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 DZIP1Q86YF9 867 aaKnown RBP13.05□□□□□ -0.32
TRIM3-211ENST00000532542 WASF1Q92558 559 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 LRRC2Q9BYS8 371 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 FOXO4P98177 505 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 STK11IPQ8N1F8 1099 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 BRMS1Q9HCU9 246 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 BECN2A8MW95 431 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 TAF5LO75529 589 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 SPTY2D1Q68D10 685 aaPredicted RBP13.05□□□□□ -0.32
TRIM3-211ENST00000532542 RASEFQ8IZ41 740 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 RNF214Q8ND24 703 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 TTLL11Q8NHH1 800 aa13.05□□□□□ -0.32
TRIM3-211ENST00000532542 KIF2CQ99661 725 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms