RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 CELF2O95319 508 aaKnown RBP18.9■□□□□ 0.62
VPS28-215ENST00000531924 ANKRD18AQ8IVF6 992 aa18.9■□□□□ 0.62
VPS28-215ENST00000531924 PI4KAP1Q8N8J0 262 aa18.9■□□□□ 0.62
VPS28-215ENST00000531924 DPF2Q92785 391 aa18.9■□□□□ 0.62
VPS28-215ENST00000531924 BEGAINQ9BUH8 593 aa18.9■□□□□ 0.62
VPS28-215ENST00000531924 GLIS2Q9BZE0 524 aaPredicted RBP18.9■□□□□ 0.62
VPS28-215ENST00000531924 ZNF408Q9H9D4 720 aa18.9■□□□□ 0.62
VPS28-215ENST00000531924 RPS12P25398 132 aaKnown RBP18.89■□□□□ 0.61
VPS28-215ENST00000531924 CST9Q5W186 159 aa18.89■□□□□ 0.61
VPS28-215ENST00000531924 CDC37L1Q7L3B6 337 aa18.89■□□□□ 0.61
VPS28-215ENST00000531924 CAPNS2Q96L46 248 aa18.89■□□□□ 0.61
VPS28-215ENST00000531924 GPR101Q96P66 508 aaPredicted RBP18.89■□□□□ 0.61
VPS28-215ENST00000531924 WBP1LQ9NX94 342 aa18.89■□□□□ 0.61
VPS28-215ENST00000531924 TAF1P21675 1872 aa18.88■□□□□ 0.61
VPS28-215ENST00000531924 SLC4A2P04920 1241 aa18.88■□□□□ 0.61
VPS28-215ENST00000531924 TRPM4Q8TD43 1214 aa18.88■□□□□ 0.61
VPS28-215ENST00000531924 CDC5LQ99459 802 aaKnown RBP18.88■□□□□ 0.61
VPS28-215ENST00000531924 PRDM10Q9NQV6 1147 aa18.88■□□□□ 0.61
VPS28-215ENST00000531924 PODXL2Q9NZ53 605 aa18.88■□□□□ 0.61
VPS28-215ENST00000531924 PGAP2Q9UHJ9 254 aa18.88■□□□□ 0.61
VPS28-215ENST00000531924 SALL2Q9Y467 1007 aaPredicted RBP18.88■□□□□ 0.61
VPS28-215ENST00000531924 IL16Q14005 1332 aa18.88■□□□□ 0.61
VPS28-215ENST00000531924 HIRAP54198 1017 aaPredicted RBP18.87■□□□□ 0.61
VPS28-215ENST00000531924 RBM26Q5T8P6 1007 aaKnown RBP18.87■□□□□ 0.61
VPS28-215ENST00000531924 CYP4F22Q6NT55 531 aa18.87■□□□□ 0.61
VPS28-215ENST00000531924 DUOX1Q9NRD9 1551 aa18.87■□□□□ 0.61
VPS28-215ENST00000531924 TLL2Q9Y6L7 1015 aa18.87■□□□□ 0.61
VPS28-215ENST00000531924 LRRC37AA6NMS7 1700 aa18.86■□□□□ 0.61
VPS28-215ENST00000531924 SHTN1A0MZ66 631 aa18.86■□□□□ 0.61
VPS28-215ENST00000531924 CTSWP56202 376 aa18.86■□□□□ 0.61
VPS28-215ENST00000531924 TBC1D10BQ4KMP7 808 aaPredicted RBP18.86■□□□□ 0.61
VPS28-215ENST00000531924 SAMD7Q7Z3H4 446 aa18.86■□□□□ 0.61
VPS28-215ENST00000531924 USP48Q86UV5 1035 aa18.86■□□□□ 0.61
VPS28-215ENST00000531924 XDHP47989 1333 aa18.85■□□□□ 0.61
VPS28-215ENST00000531924 ZNF316A6NFI3 1004 aaPredicted RBP18.85■□□□□ 0.61
VPS28-215ENST00000531924 IGKV5-2P06315 115 aa18.85■□□□□ 0.61
VPS28-215ENST00000531924 LBX1P52954 281 aa18.85■□□□□ 0.61
VPS28-215ENST00000531924 NCBP3Q53F19 620 aaKnown RBP18.85■□□□□ 0.61
VPS28-215ENST00000531924 DCPSQ96C86 337 aaKnown RBP18.85■□□□□ 0.61
VPS28-215ENST00000531924 KCNQ5Q9NR82 932 aa18.85■□□□□ 0.61
VPS28-215ENST00000531924 ATP2B4P23634 1241 aa18.84■□□□□ 0.61
VPS28-215ENST00000531924 FKBP5Q13451 457 aaPredicted RBP18.84■□□□□ 0.61
VPS28-215ENST00000531924 CWF19L2Q2TBE0 894 aaKnown RBP18.84■□□□□ 0.61
VPS28-215ENST00000531924 NEURL1BA8MQ27 555 aa18.83■□□□□ 0.6
VPS28-215ENST00000531924 G2E3Q7L622 706 aa18.83■□□□□ 0.6
VPS28-215ENST00000531924 UBE3BQ7Z3V4 1068 aa18.83■□□□□ 0.6
VPS28-215ENST00000531924 KRT26Q7Z3Y9 468 aa18.83■□□□□ 0.6
VPS28-215ENST00000531924 SAPCD2Q86UD0 394 aa18.83■□□□□ 0.6
VPS28-215ENST00000531924 MYH16Q9H6N6 1097 aa18.83■□□□□ 0.6
VPS28-215ENST00000531924 FANCIQ9NVI1 1328 aa18.82■□□□□ 0.6
VPS28-215ENST00000531924 VIL1P09327 827 aaKnown RBP18.82■□□□□ 0.6
VPS28-215ENST00000531924 MAP2K2P36507 400 aa18.82■□□□□ 0.6
VPS28-215ENST00000531924 FLIIQ13045 1269 aa18.82■□□□□ 0.6
VPS28-215ENST00000531924 WDR63Q8IWG1 891 aa18.82■□□□□ 0.6
VPS28-215ENST00000531924 TTLL11Q8NHH1 800 aa18.82■□□□□ 0.6
VPS28-215ENST00000531924 GREM2Q9H772 168 aa18.82■□□□□ 0.6
VPS28-215ENST00000531924 RTL9Q8NET4 1388 aa18.81■□□□□ 0.6
VPS28-215ENST00000531924 IGHMBP2P38935 993 aaKnown RBP18.81■□□□□ 0.6
VPS28-215ENST00000531924 KIF4BQ2VIQ3 1234 aa18.81■□□□□ 0.6
VPS28-215ENST00000531924 BSDC1Q9NW68 430 aaPredicted RBP18.81■□□□□ 0.6
VPS28-215ENST00000531924 COL4A1P02462 1669 aa18.8■□□□□ 0.6
VPS28-215ENST00000531924 AOC2O75106 756 aa18.8■□□□□ 0.6
VPS28-215ENST00000531924 HSPA8P11142 646 aaKnown RBP18.8■□□□□ 0.6
VPS28-215ENST00000531924 GCKRQ14397 625 aa18.8■□□□□ 0.6
VPS28-215ENST00000531924 RSBN1LQ6PCB5 846 aaPredicted RBP18.8■□□□□ 0.6
VPS28-215ENST00000531924 SULF1Q8IWU6 871 aa18.8■□□□□ 0.6
VPS28-215ENST00000531924 DNAAF4Q8WXU2 420 aa18.8■□□□□ 0.6
VPS28-215ENST00000531924 HHIPL1Q96JK4 782 aa18.8■□□□□ 0.6
VPS28-215ENST00000531924 H7C1W4 665 aa18.79■□□□□ 0.6
VPS28-215ENST00000531924 HUNKP57058 714 aa18.79■□□□□ 0.6
VPS28-215ENST00000531924 EXOSC9Q06265 439 aaKnown RBP18.79■□□□□ 0.6
VPS28-215ENST00000531924 PODNQ7Z5L7 613 aa18.79■□□□□ 0.6
VPS28-215ENST00000531924 C2orf69Q8N8R5 385 aa18.79■□□□□ 0.6
VPS28-215ENST00000531924 AGBL3Q8NEM8 1001 aa18.79■□□□□ 0.6
VPS28-215ENST00000531924 MPHOSPH8Q99549 860 aa18.79■□□□□ 0.6
VPS28-215ENST00000531924 MINPP1Q9UNW1 487 aa18.79■□□□□ 0.6
VPS28-215ENST00000531924 TRPM7Q96QT4 1865 aa18.78■□□□□ 0.6
VPS28-215ENST00000531924 USP17L3A6NCW0 530 aa18.78■□□□□ 0.6
VPS28-215ENST00000531924 USP17L4A6NCW7 530 aa18.78■□□□□ 0.6
VPS28-215ENST00000531924 EGFRP00533 1210 aa18.78■□□□□ 0.6
VPS28-215ENST00000531924 USP17L1Q7RTZ2 530 aa18.78■□□□□ 0.6
VPS28-215ENST00000531924 LINS1Q8NG48 757 aa18.78■□□□□ 0.6
VPS28-215ENST00000531924 FBXW7Q969H0 707 aa18.78■□□□□ 0.6
VPS28-215ENST00000531924 ADM5C9JUS6 153 aa18.77■□□□□ 0.6
VPS28-215ENST00000531924 USP17L8P0C7I0 530 aa18.77■□□□□ 0.6
VPS28-215ENST00000531924 CCT4P50991 539 aaKnown RBP18.77■□□□□ 0.6
VPS28-215ENST00000531924 FAM9BQ8IZU0 186 aa18.77■□□□□ 0.6
VPS28-215ENST00000531924 ANKRD2Q9GZV1 360 aa18.77■□□□□ 0.6
VPS28-215ENST00000531924 GGA3Q9NZ52 723 aa18.77■□□□□ 0.6
VPS28-215ENST00000531924 CA12O43570 354 aa18.76■□□□□ 0.59
VPS28-215ENST00000531924 VAMP4O75379 141 aa18.76■□□□□ 0.59
VPS28-215ENST00000531924 ITGA6P23229 1130 aa18.76■□□□□ 0.59
VPS28-215ENST00000531924 KCNJ4P48050 445 aa18.76■□□□□ 0.59
VPS28-215ENST00000531924 DLK2Q6UY11 383 aa18.76■□□□□ 0.59
VPS28-215ENST00000531924 GBA2Q9HCG7 927 aaPredicted RBP18.76■□□□□ 0.59
VPS28-215ENST00000531924 ZNF280AP59817 542 aaPredicted RBP18.75■□□□□ 0.59
VPS28-215ENST00000531924 NOGQ13253 232 aa18.75■□□□□ 0.59
VPS28-215ENST00000531924 SCARF1Q14162 830 aa18.75■□□□□ 0.59
VPS28-215ENST00000531924 FAM161AQ3B820 660 aa18.75■□□□□ 0.59
VPS28-215ENST00000531924 OGFOD1Q8N543 542 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 221.1 ms