RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 NAGPAQ9UK23 515 aa8.57□□□□□ -1.04
CD44-231ENST00000531110 GPR182O15218 404 aa8.56□□□□□ -1.04
CD44-231ENST00000531110 PHACTR2O75167 634 aa8.56□□□□□ -1.04
CD44-231ENST00000531110 CES1P23141 567 aa8.56□□□□□ -1.04
CD44-231ENST00000531110 TMC7Q7Z402 723 aa8.56□□□□□ -1.04
CD44-231ENST00000531110 PODNQ7Z5L7 613 aa8.56□□□□□ -1.04
CD44-231ENST00000531110 CACTIN-AS1Q8N1I8 211 aa8.56□□□□□ -1.04
CD44-231ENST00000531110 MICALL1Q8N3F8 863 aa8.56□□□□□ -1.04
CD44-231ENST00000531110 CNTN3Q9P232 1028 aa8.56□□□□□ -1.04
CD44-231ENST00000531110 SALL4Q9UJQ4 1053 aa8.56□□□□□ -1.04
CD44-231ENST00000531110 MKL2Q9ULH7 1088 aa8.56□□□□□ -1.04
CD44-231ENST00000531110 A6NHS1 94 aa8.55□□□□□ -1.04
CD44-231ENST00000531110 RNF225M0QZC1 329 aaPredicted RBP8.55□□□□□ -1.04
CD44-231ENST00000531110 TREHO43280 583 aa8.55□□□□□ -1.04
CD44-231ENST00000531110 TBC1D8BQ0IIM8 1120 aa8.55□□□□□ -1.04
CD44-231ENST00000531110 COL19A1Q14993 1142 aa8.55□□□□□ -1.04
CD44-231ENST00000531110 BEND7Q8N7W2 519 aaPredicted RBP8.55□□□□□ -1.04
CD44-231ENST00000531110 C1orf127Q8N9H9 656 aa8.55□□□□□ -1.04
CD44-231ENST00000531110 IGFLR1Q9H665 355 aa8.55□□□□□ -1.04
CD44-231ENST00000531110 EIF5BO60841 1220 aaKnown RBP8.54□□□□□ -1.04
CD44-231ENST00000531110 GHRHP01286 108 aa8.54□□□□□ -1.04
CD44-231ENST00000531110 ALBP02768 609 aa8.54□□□□□ -1.04
CD44-231ENST00000531110 EDN3P14138 238 aa8.54□□□□□ -1.04
CD44-231ENST00000531110 ERCC3P19447 782 aa8.54□□□□□ -1.04
CD44-231ENST00000531110 DSC3Q14574 896 aa8.54□□□□□ -1.04
CD44-231ENST00000531110 PSAPL1Q6NUJ1 521 aa8.54□□□□□ -1.04
CD44-231ENST00000531110 TMC1Q8TDI8 760 aa8.54□□□□□ -1.04
CD44-231ENST00000531110 SPACA7Q96KW9 195 aa8.54□□□□□ -1.04
CD44-231ENST00000531110 LPIN3Q9BQK8 851 aa8.54□□□□□ -1.04
CD44-231ENST00000531110 ZFYVE28Q9HCC9 887 aa8.54□□□□□ -1.04
CD44-231ENST00000531110 AMOTL2Q9Y2J4 779 aa8.54□□□□□ -1.04
CD44-231ENST00000531110 M0R082 166 aa8.53□□□□□ -1.04
CD44-231ENST00000531110 GNB5O14775 395 aa8.53□□□□□ -1.04
CD44-231ENST00000531110 LILRB5O75023 590 aa8.53□□□□□ -1.04
CD44-231ENST00000531110 RGS9O75916 674 aaPredicted RBP8.53□□□□□ -1.04
CD44-231ENST00000531110 PERM1Q5SV97 790 aa8.53□□□□□ -1.04
CD44-231ENST00000531110 ELMSAN1Q6PJG2 1045 aa8.53□□□□□ -1.04
CD44-231ENST00000531110 LINC00114Q6XXX2 140 aa8.53□□□□□ -1.04
CD44-231ENST00000531110 ALYREFQ86V81 257 aaKnown RBP8.53□□□□□ -1.04
CD44-231ENST00000531110 CEP120Q8N960 986 aa8.53□□□□□ -1.04
CD44-231ENST00000531110 ZNF417Q8TAU3 575 aa8.53□□□□□ -1.04
CD44-231ENST00000531110 NSUN5Q96P11 429 aaKnown RBP8.53□□□□□ -1.04
CD44-231ENST00000531110 ZNF587Q96SQ5 575 aaPredicted RBP8.53□□□□□ -1.04
CD44-231ENST00000531110 GZF1Q9H116 711 aaPredicted RBP8.53□□□□□ -1.04
CD44-231ENST00000531110 FOXD3Q9UJU5 478 aaPredicted RBP8.53□□□□□ -1.04
CD44-231ENST00000531110 CPNE3O75131 537 aaKnown RBP8.52□□□□□ -1.05
CD44-231ENST00000531110 CYP2E1P05181 493 aaPredicted RBP8.52□□□□□ -1.05
CD44-231ENST00000531110 CPB1P15086 417 aa8.52□□□□□ -1.05
CD44-231ENST00000531110 EIF2AK2P19525 551 aaKnown RBP8.52□□□□□ -1.05
CD44-231ENST00000531110 FMR1Q06787 632 aaKnown RBP eCLIP8.52□□□□□ -1.05
CD44-231ENST00000531110 PLD4Q96BZ4 506 aa8.52□□□□□ -1.05
CD44-231ENST00000531110 EREGO14944 169 aa8.51□□□□□ -1.05
CD44-231ENST00000531110 CENPBP07199 599 aaPredicted RBP8.51□□□□□ -1.05
CD44-231ENST00000531110 SNRPNP63162 240 aaKnown RBP8.51□□□□□ -1.05
CD44-231ENST00000531110 MLLT1Q03111 559 aaPredicted RBP8.51□□□□□ -1.05
CD44-231ENST00000531110 CCDC27Q2M243 656 aa8.51□□□□□ -1.05
CD44-231ENST00000531110 COL13A1Q5TAT6 717 aaPredicted RBP8.51□□□□□ -1.05
CD44-231ENST00000531110 ILDR2Q71H61 639 aa8.51□□□□□ -1.05
CD44-231ENST00000531110 NCAPG2Q86XI2 1143 aa8.51□□□□□ -1.05
CD44-231ENST00000531110 GALNT12Q8IXK2 581 aa8.51□□□□□ -1.05
CD44-231ENST00000531110 RRAGCQ9HB90 399 aa8.51□□□□□ -1.05
CD44-231ENST00000531110 JPH1Q9HDC5 661 aaPredicted RBP8.51□□□□□ -1.05
CD44-231ENST00000531110 NOP53Q9NZM5 478 aaKnown RBP8.51□□□□□ -1.05
CD44-231ENST00000531110 SPDYE3A6NKU9 549 aa8.5□□□□□ -1.05
CD44-231ENST00000531110 NID1P14543 1247 aa8.5□□□□□ -1.05
CD44-231ENST00000531110 PLCB3Q01970 1234 aa8.5□□□□□ -1.05
CD44-231ENST00000531110 COL9A3Q14050 684 aaPredicted RBP8.5□□□□□ -1.05
CD44-231ENST00000531110 CSRNP1Q96S65 589 aa8.5□□□□□ -1.05
CD44-231ENST00000531110 NIF3L1Q9GZT8 377 aa8.5□□□□□ -1.05
CD44-231ENST00000531110 SMG9Q9H0W8 520 aaKnown RBP8.5□□□□□ -1.05
CD44-231ENST00000531110 J3QW42 95 aa8.49□□□□□ -1.05
CD44-231ENST00000531110 EIF1AYO14602 144 aaKnown RBP8.49□□□□□ -1.05
CD44-231ENST00000531110 SMNDC1O75940 238 aaKnown RBP eCLIP8.49□□□□□ -1.05
CD44-231ENST00000531110 AFF1P51825 1210 aaKnown RBP8.49□□□□□ -1.05
CD44-231ENST00000531110 GRIK5Q16478 980 aa8.49□□□□□ -1.05
CD44-231ENST00000531110 DNAJC14Q6Y2X3 702 aaPredicted RBP8.49□□□□□ -1.05
CD44-231ENST00000531110 PBX4Q9BYU1 374 aa8.49□□□□□ -1.05
CD44-231ENST00000531110 KANSL3Q9P2N6 904 aa8.49□□□□□ -1.05
CD44-231ENST00000531110 FGD1P98174 961 aa8.48□□□□□ -1.05
CD44-231ENST00000531110 ORC1Q13415 861 aa8.48□□□□□ -1.05
CD44-231ENST00000531110 ENOX2Q16206 610 aaKnown RBP8.48□□□□□ -1.05
CD44-231ENST00000531110 HFE2Q6ZVN8 426 aa8.48□□□□□ -1.05
CD44-231ENST00000531110 DTWD1Q8N5C7 304 aa8.48□□□□□ -1.05
CD44-231ENST00000531110 FBF1Q8TES7 1133 aa8.48□□□□□ -1.05
CD44-231ENST00000531110 MUC3BQ9H195 1237 aa8.48□□□□□ -1.05
CD44-231ENST00000531110 DZANK1Q9NVP4 752 aa8.48□□□□□ -1.05
CD44-231ENST00000531110 KCNMA1Q12791 1236 aa8.47□□□□□ -1.05
CD44-231ENST00000531110 TMEM102Q8N9M5 508 aaPredicted RBP8.47□□□□□ -1.05
CD44-231ENST00000531110 NUDT8Q8WV74 236 aa8.47□□□□□ -1.05
CD44-231ENST00000531110 SRA1Q9HD15 236 aaKnown RBP8.47□□□□□ -1.05
CD44-231ENST00000531110 NFKBIEO00221 500 aa8.46□□□□□ -1.06
CD44-231ENST00000531110 TMCO4Q5TGY1 634 aa8.46□□□□□ -1.06
CD44-231ENST00000531110 KIAA0319Q5VV43 1072 aa8.46□□□□□ -1.06
CD44-231ENST00000531110 PEAR1Q5VY43 1037 aaPredicted RBP8.46□□□□□ -1.06
CD44-231ENST00000531110 MSL1Q68DK7 614 aa8.46□□□□□ -1.06
CD44-231ENST00000531110 TRIM11Q96F44 468 aa8.46□□□□□ -1.06
CD44-231ENST00000531110 BHLHE41Q9C0J9 482 aaPredicted RBP8.46□□□□□ -1.06
CD44-231ENST00000531110 ADAM19Q9H013 955 aa8.46□□□□□ -1.06
CD44-231ENST00000531110 RASSF4Q9H2L5 321 aa8.46□□□□□ -1.06
CD44-231ENST00000531110 CNTNAP5Q8WYK1 1306 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms