RNA–Protein interactions for RNA: ENST00000530906.1

PCF11-205, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 628 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-205ENST00000530906 HOXC9P31274 260 aa6.99□□□□□ -1.29
PCF11-205ENST00000530906 TMEM57Q8N5G2 664 aa6.99□□□□□ -1.29
PCF11-205ENST00000530906 ABTB2Q8N961 1025 aa6.99□□□□□ -1.29
PCF11-205ENST00000530906 NCAPD2Q15021 1401 aa6.99□□□□□ -1.29
PCF11-205ENST00000530906 MAP3K5Q99683 1374 aa6.98□□□□□ -1.29
PCF11-205ENST00000530906 CAMTA1Q9Y6Y1 1673 aa6.98□□□□□ -1.29
PCF11-205ENST00000530906 RGS3P49796 1198 aa6.98□□□□□ -1.29
PCF11-205ENST00000530906 NBPF14Q5TI25 921 aa6.98□□□□□ -1.29
PCF11-205ENST00000530906 INTS3Q68E01 1043 aaKnown RBP6.98□□□□□ -1.29
PCF11-205ENST00000530906 LINC00528Q8N1L1 170 aa6.98□□□□□ -1.29
PCF11-205ENST00000530906 HELBQ8NG08 1087 aaPredicted RBP6.98□□□□□ -1.29
PCF11-205ENST00000530906 IP6K1Q92551 441 aa6.98□□□□□ -1.29
PCF11-205ENST00000530906 SLC24A3Q9HC58 644 aa6.98□□□□□ -1.29
PCF11-205ENST00000530906 LAS1LQ9Y4W2 734 aaKnown RBP6.98□□□□□ -1.29
PCF11-205ENST00000530906 TRPM3Q9HCF6 1732 aaPredicted RBP6.98□□□□□ -1.29
PCF11-205ENST00000530906 SOS2Q07890 1332 aaPredicted RBP6.98□□□□□ -1.29
PCF11-205ENST00000530906 N4BP2Q86UW6 1770 aaPredicted RBP6.97□□□□□ -1.29
PCF11-205ENST00000530906 GNAT3A8MTJ3 354 aa6.97□□□□□ -1.29
PCF11-205ENST00000530906 PPFIA3O75145 1194 aa6.97□□□□□ -1.29
PCF11-205ENST00000530906 HOXB7P09629 217 aa6.97□□□□□ -1.29
PCF11-205ENST00000530906 BMP2P12643 396 aa6.97□□□□□ -1.29
PCF11-205ENST00000530906 FSHRP23945 695 aa6.97□□□□□ -1.29
PCF11-205ENST00000530906 CLK2P49760 499 aaKnown RBP6.97□□□□□ -1.29
PCF11-205ENST00000530906 PSME1Q06323 249 aa6.97□□□□□ -1.29
PCF11-205ENST00000530906 MED1Q15648 1581 aaPredicted RBP6.97□□□□□ -1.29
PCF11-205ENST00000530906 AEBP1Q8IUX7 1158 aa6.97□□□□□ -1.29
PCF11-205ENST00000530906 C19orf44Q9H6X5 657 aa6.97□□□□□ -1.29
PCF11-205ENST00000530906 USP35Q9P2H5 1018 aa6.97□□□□□ -1.29
PCF11-205ENST00000530906 PXDNLA1KZ92 1463 aa6.97□□□□□ -1.29
PCF11-205ENST00000530906 USP19O94966 1318 aa6.97□□□□□ -1.29
PCF11-205ENST00000530906 LMO7Q8WWI1 1683 aa6.96□□□□□ -1.29
PCF11-205ENST00000530906 FAM208AQ9UK61 1670 aaKnown RBP6.96□□□□□ -1.29
PCF11-205ENST00000530906 ZBTB7BO15156 539 aaPredicted RBP6.96□□□□□ -1.3
PCF11-205ENST00000530906 NUCB1Q02818 461 aa6.96□□□□□ -1.3
PCF11-205ENST00000530906 AMOTQ4VCS5 1084 aa6.96□□□□□ -1.3
PCF11-205ENST00000530906 VASH1Q7L8A9 365 aaPredicted RBP6.96□□□□□ -1.3
PCF11-205ENST00000530906 TSPYL6Q8N831 410 aa6.96□□□□□ -1.3
PCF11-205ENST00000530906 C8orf58Q8NAV2 365 aa6.96□□□□□ -1.3
PCF11-205ENST00000530906 GPKOWQ92917 476 aaPredicted RBP eCLIP6.96□□□□□ -1.3
PCF11-205ENST00000530906 THUMPD2Q9BTF0 503 aaKnown RBP6.96□□□□□ -1.3
PCF11-205ENST00000530906 DNMT3LQ9UJW3 386 aa6.96□□□□□ -1.3
PCF11-205ENST00000530906 MSH6P52701 1360 aa6.95□□□□□ -1.3
PCF11-205ENST00000530906 CEMIPQ8WUJ3 1361 aa6.95□□□□□ -1.3
PCF11-205ENST00000530906 MAGEB6P1A0A0J9YX57 407 aa6.95□□□□□ -1.3
PCF11-205ENST00000530906 UPP2O95045 317 aa6.95□□□□□ -1.3
PCF11-205ENST00000530906 CCT4P50991 539 aaKnown RBP6.95□□□□□ -1.3
PCF11-205ENST00000530906 CTDSPL2Q05D32 466 aa6.95□□□□□ -1.3
PCF11-205ENST00000530906 BECN1Q14457 450 aa6.95□□□□□ -1.3
PCF11-205ENST00000530906 MTHFSDQ2M296 383 aaKnown RBP6.95□□□□□ -1.3
PCF11-205ENST00000530906 ESCO1Q5FWF5 840 aa6.95□□□□□ -1.3
PCF11-205ENST00000530906 RPAP2Q8IXW5 612 aaPredicted RBP6.95□□□□□ -1.3
PCF11-205ENST00000530906 STK31Q9BXU1 1019 aa6.95□□□□□ -1.3
PCF11-205ENST00000530906 POLR3EQ9NVU0 708 aa6.95□□□□□ -1.3
PCF11-205ENST00000530906 TSPYL4Q9UJ04 414 aa6.95□□□□□ -1.3
PCF11-205ENST00000530906 TNNQ9UQP3 1299 aa6.95□□□□□ -1.3
PCF11-205ENST00000530906 C1orf167Q5SNV9 1468 aa6.95□□□□□ -1.3
PCF11-205ENST00000530906 ALS2Q96Q42 1657 aa6.95□□□□□ -1.3
PCF11-205ENST00000530906 RGS12O14924 1447 aa6.94□□□□□ -1.3
PCF11-205ENST00000530906 FAM83GA6ND36 823 aa6.94□□□□□ -1.3
PCF11-205ENST00000530906 HMMRO75330 724 aa6.94□□□□□ -1.3
PCF11-205ENST00000530906 TAF7Q15545 349 aaPredicted RBP6.94□□□□□ -1.3
PCF11-205ENST00000530906 ERFEQ4G0M1 354 aa6.94□□□□□ -1.3
PCF11-205ENST00000530906 BMP2KLQ5H9B9 411 aa6.94□□□□□ -1.3
PCF11-205ENST00000530906 CCDC30Q5VVM6 783 aa6.94□□□□□ -1.3
PCF11-205ENST00000530906 NPM2Q86SE8 214 aaKnown RBP6.94□□□□□ -1.3
PCF11-205ENST00000530906 C14orf37Q86TY3 774 aa6.94□□□□□ -1.3
PCF11-205ENST00000530906 CHD1LQ86WJ1 897 aa6.94□□□□□ -1.3
PCF11-205ENST00000530906 PROSER2Q86WR7 435 aaPredicted RBP6.94□□□□□ -1.3
PCF11-205ENST00000530906 CCDC116Q8IYX3 515 aa6.94□□□□□ -1.3
PCF11-205ENST00000530906 TSEN34Q9BSV6 310 aaKnown RBP6.94□□□□□ -1.3
PCF11-205ENST00000530906 KDM3BQ7LBC6 1761 aa6.93□□□□□ -1.3
PCF11-205ENST00000530906 MCM10Q7L590 875 aa6.93□□□□□ -1.3
PCF11-205ENST00000530906 ARHGEF25Q86VW2 580 aa6.93□□□□□ -1.3
PCF11-205ENST00000530906 ADAMTS7Q9UKP4 1686 aa6.93□□□□□ -1.3
PCF11-205ENST00000530906 GCP02774 474 aa6.92□□□□□ -1.3
PCF11-205ENST00000530906 GNAI3P08754 354 aa6.92□□□□□ -1.3
PCF11-205ENST00000530906 ATF3P18847 181 aa6.92□□□□□ -1.3
PCF11-205ENST00000530906 DCTN1Q14203 1278 aa6.92□□□□□ -1.3
PCF11-205ENST00000530906 PLEKHO1Q53GL0 409 aaPredicted RBP6.92□□□□□ -1.3
PCF11-205ENST00000530906 AKAP4Q5JQC9 854 aa6.92□□□□□ -1.3
PCF11-205ENST00000530906 PPP1R26Q5T8A7 1209 aaPredicted RBP6.92□□□□□ -1.3
PCF11-205ENST00000530906 PDXDC2PQ6P474 469 aa6.92□□□□□ -1.3
PCF11-205ENST00000530906 Q6ZVU0 165 aa6.92□□□□□ -1.3
PCF11-205ENST00000530906 ANKRD44Q8N8A2 993 aa6.92□□□□□ -1.3
PCF11-205ENST00000530906 TBC1D32Q96NH3 1257 aa6.92□□□□□ -1.3
PCF11-205ENST00000530906 HDAC5Q9UQL6 1122 aa6.92□□□□□ -1.3
PCF11-205ENST00000530906 NPHP3Q7Z494 1330 aa6.92□□□□□ -1.3
PCF11-205ENST00000530906 IBTKQ9P2D0 1353 aaPredicted RBP6.92□□□□□ -1.3
PCF11-205ENST00000530906 ATP10DQ9P241 1426 aa6.92□□□□□ -1.3
PCF11-205ENST00000530906 ELL2O00472 640 aaPredicted RBP6.91□□□□□ -1.3
PCF11-205ENST00000530906 GPR161Q8N6U8 529 aaKnown RBP6.91□□□□□ -1.3
PCF11-205ENST00000530906 IL27Q8NEV9 243 aa6.91□□□□□ -1.3
PCF11-205ENST00000530906 LRRN4Q8WUT4 740 aa6.91□□□□□ -1.3
PCF11-205ENST00000530906 DCTPP1Q9H773 170 aa6.91□□□□□ -1.3
PCF11-205ENST00000530906 TTLL8A6PVC2 850 aa6.9□□□□□ -1.3
PCF11-205ENST00000530906 KRT76Q01546 638 aa6.9□□□□□ -1.3
PCF11-205ENST00000530906 CBLBQ13191 982 aa6.9□□□□□ -1.3
PCF11-205ENST00000530906 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.9□□□□□ -1.3
PCF11-205ENST00000530906 KRT28Q7Z3Y7 464 aa6.9□□□□□ -1.3
PCF11-205ENST00000530906 SKAP1Q86WV1 359 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms