RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 CREBZFQ9NS37 354 aa16.94■□□□□ 0.3
VPS28-211ENST00000530790 XDHP47989 1333 aa16.94■□□□□ 0.3
VPS28-211ENST00000530790 MAP1SQ66K74 1059 aaPredicted RBP16.93■□□□□ 0.3
VPS28-211ENST00000530790 GPR101Q96P66 508 aaPredicted RBP16.93■□□□□ 0.3
VPS28-211ENST00000530790 PLA2G12BQ9BX93 195 aa16.93■□□□□ 0.3
VPS28-211ENST00000530790 ZC3H12CQ9C0D7 883 aaKnown RBP16.93■□□□□ 0.3
VPS28-211ENST00000530790 ADARB2Q9NS39 739 aaKnown RBP16.93■□□□□ 0.3
VPS28-211ENST00000530790 ECE2O60344 883 aa16.92■□□□□ 0.3
VPS28-211ENST00000530790 CNTROBQ8N137 903 aa16.92■□□□□ 0.3
VPS28-211ENST00000530790 G3V3G9 751 aa16.91■□□□□ 0.3
VPS28-211ENST00000530790 ITGBL1O95965 494 aaPredicted RBP16.91■□□□□ 0.3
VPS28-211ENST00000530790 IGHMBP2P38935 993 aaKnown RBP16.91■□□□□ 0.3
VPS28-211ENST00000530790 CASP7P55210 303 aa16.91■□□□□ 0.3
VPS28-211ENST00000530790 DOK7Q18PE1 504 aa16.91■□□□□ 0.3
VPS28-211ENST00000530790 FAM161AQ3B820 660 aa16.91■□□□□ 0.3
VPS28-211ENST00000530790 BEND3Q5T5X7 828 aa16.91■□□□□ 0.3
VPS28-211ENST00000530790 DCAF8Q5TAQ9 597 aa16.91■□□□□ 0.3
VPS28-211ENST00000530790 BSDC1Q9NW68 430 aaPredicted RBP16.91■□□□□ 0.3
VPS28-211ENST00000530790 SPEF2Q9C093 1822 aa16.91■□□□□ 0.3
VPS28-211ENST00000530790 PSMD14O00487 310 aa16.9■□□□□ 0.3
VPS28-211ENST00000530790 ATP2B4P23634 1241 aa16.9■□□□□ 0.3
VPS28-211ENST00000530790 JMYQ8N9B5 988 aa16.9■□□□□ 0.3
VPS28-211ENST00000530790 TMEM88BA6NKF7 163 aa16.89■□□□□ 0.29
VPS28-211ENST00000530790 ITGA6P23229 1130 aa16.89■□□□□ 0.29
VPS28-211ENST00000530790 SLC4A10Q6U841 1118 aa16.89■□□□□ 0.29
VPS28-211ENST00000530790 GRM8O00222 908 aa16.88■□□□□ 0.29
VPS28-211ENST00000530790 ALDH1L1O75891 902 aa16.88■□□□□ 0.29
VPS28-211ENST00000530790 RPS12P25398 132 aaKnown RBP16.88■□□□□ 0.29
VPS28-211ENST00000530790 SLFN5Q08AF3 891 aa16.88■□□□□ 0.29
VPS28-211ENST00000530790 MICALL2Q8IY33 904 aa16.88■□□□□ 0.29
VPS28-211ENST00000530790 DPF2Q92785 391 aa16.88■□□□□ 0.29
VPS28-211ENST00000530790 MPHOSPH8Q99549 860 aa16.88■□□□□ 0.29
VPS28-211ENST00000530790 MINPP1Q9UNW1 487 aa16.88■□□□□ 0.29
VPS28-211ENST00000530790 ZBTB12Q9Y330 459 aaPredicted RBP16.88■□□□□ 0.29
VPS28-211ENST00000530790 MED23Q9ULK4 1368 aa16.88■□□□□ 0.29
VPS28-211ENST00000530790 H7C1D1 291 aa16.87■□□□□ 0.29
VPS28-211ENST00000530790 CSF1RP07333 972 aa16.87■□□□□ 0.29
VPS28-211ENST00000530790 SRCIN1Q9C0H9 1055 aa16.87■□□□□ 0.29
VPS28-211ENST00000530790 C9orf78Q9NZ63 289 aaPredicted RBP16.87■□□□□ 0.29
VPS28-211ENST00000530790 MKRN1Q9UHC7 482 aaKnown RBP16.87■□□□□ 0.29
VPS28-211ENST00000530790 CNOT7Q9UIV1 285 aaKnown RBP16.87■□□□□ 0.29
VPS28-211ENST00000530790 CHMP3Q9Y3E7 222 aa16.87■□□□□ 0.29
VPS28-211ENST00000530790 ANKRD18BA2A2Z9 1011 aa16.86■□□□□ 0.29
VPS28-211ENST00000530790 PTPRCP08575 1304 aa16.86■□□□□ 0.29
VPS28-211ENST00000530790 CNTNAP1P78357 1384 aa16.86■□□□□ 0.29
VPS28-211ENST00000530790 SHTN1A0MZ66 631 aa16.85■□□□□ 0.29
VPS28-211ENST00000530790 CCT4P50991 539 aaKnown RBP16.85■□□□□ 0.29
VPS28-211ENST00000530790 IFIT5Q13325 482 aaKnown RBP16.85■□□□□ 0.29
VPS28-211ENST00000530790 MRPL50Q8N5N7 158 aaKnown RBP16.85■□□□□ 0.29
VPS28-211ENST00000530790 TRPM4Q8TD43 1214 aa16.85■□□□□ 0.29
VPS28-211ENST00000530790 CDCA7LQ96GN5 454 aa16.85■□□□□ 0.29
VPS28-211ENST00000530790 ANKRD2Q9GZV1 360 aa16.85■□□□□ 0.29
VPS28-211ENST00000530790 KCNQ5Q9NR82 932 aa16.85■□□□□ 0.29
VPS28-211ENST00000530790 ZNF609O15014 1411 aa16.85■□□□□ 0.29
VPS28-211ENST00000530790 FOXO4P98177 505 aa16.84■□□□□ 0.29
VPS28-211ENST00000530790 ZC3H15Q8WU90 426 aaKnown RBP16.84■□□□□ 0.29
VPS28-211ENST00000530790 SSH1Q8WYL5 1049 aa16.84■□□□□ 0.29
VPS28-211ENST00000530790 VIL1P09327 827 aaKnown RBP16.83■□□□□ 0.28
VPS28-211ENST00000530790 KCNJ4P48050 445 aa16.83■□□□□ 0.28
VPS28-211ENST00000530790 SCN9AQ15858 1988 aa16.83■□□□□ 0.28
VPS28-211ENST00000530790 LMBR1LQ6UX01 489 aa16.83■□□□□ 0.28
VPS28-211ENST00000530790 PODNQ7Z5L7 613 aa16.83■□□□□ 0.28
VPS28-211ENST00000530790 LEMD3Q9Y2U8 911 aa16.83■□□□□ 0.28
VPS28-211ENST00000530790 ZNF804BA4D1E1 1349 aa16.82■□□□□ 0.28
VPS28-211ENST00000530790 TRAF5O00463 557 aa16.82■□□□□ 0.28
VPS28-211ENST00000530790 HIRAP54198 1017 aaPredicted RBP16.82■□□□□ 0.28
VPS28-211ENST00000530790 CHRNDQ07001 517 aa16.82■□□□□ 0.28
VPS28-211ENST00000530790 ALDH1L2Q3SY69 923 aa16.82■□□□□ 0.28
VPS28-211ENST00000530790 TBC1D10BQ4KMP7 808 aaPredicted RBP16.82■□□□□ 0.28
VPS28-211ENST00000530790 TAF7LQ5H9L4 462 aa16.82■□□□□ 0.28
VPS28-211ENST00000530790 RSBN1LQ6PCB5 846 aaPredicted RBP16.82■□□□□ 0.28
VPS28-211ENST00000530790 SAMD7Q7Z3H4 446 aa16.82■□□□□ 0.28
VPS28-211ENST00000530790 SMC4Q9NTJ3 1288 aa16.82■□□□□ 0.28
VPS28-211ENST00000530790 PGAP2Q9UHJ9 254 aa16.82■□□□□ 0.28
VPS28-211ENST00000530790 ABT1Q9ULW3 272 aaKnown RBP16.82■□□□□ 0.28
VPS28-211ENST00000530790 USP17L3A6NCW0 530 aa16.81■□□□□ 0.28
VPS28-211ENST00000530790 USP17L4A6NCW7 530 aa16.81■□□□□ 0.28
VPS28-211ENST00000530790 WTIPA6NIX2 430 aaPredicted RBP16.81■□□□□ 0.28
VPS28-211ENST00000530790 CT47B1P0C2W7 299 aaPredicted RBP16.81■□□□□ 0.28
VPS28-211ENST00000530790 CCDC57Q2TAC2 916 aa16.81■□□□□ 0.28
VPS28-211ENST00000530790 KIF4BQ2VIQ3 1234 aa16.81■□□□□ 0.28
VPS28-211ENST00000530790 EPHA10Q5JZY3 1008 aa16.81■□□□□ 0.28
VPS28-211ENST00000530790 USP17L1Q7RTZ2 530 aa16.81■□□□□ 0.28
VPS28-211ENST00000530790 AGBL3Q8NEM8 1001 aa16.81■□□□□ 0.28
VPS28-211ENST00000530790 GLIS2Q9BZE0 524 aaPredicted RBP16.81■□□□□ 0.28
VPS28-211ENST00000530790 PSME4Q14997 1843 aa16.81■□□□□ 0.28
VPS28-211ENST00000530790 RASSF10A6NK89 507 aa16.8■□□□□ 0.28
VPS28-211ENST00000530790 FMR1Q06787 632 aaKnown RBP eCLIP16.8■□□□□ 0.28
VPS28-211ENST00000530790 CDC37L1Q7L3B6 337 aa16.8■□□□□ 0.28
VPS28-211ENST00000530790 TRMT2AQ8IZ69 625 aaKnown RBP16.8■□□□□ 0.28
VPS28-211ENST00000530790 SUCLG2Q96I99 432 aa16.8■□□□□ 0.28
VPS28-211ENST00000530790 COA1Q9GZY4 146 aa16.8■□□□□ 0.28
VPS28-211ENST00000530790 PCNTO95613 3336 aa16.79■□□□□ 0.28
VPS28-211ENST00000530790 UTYO14607 1347 aa16.79■□□□□ 0.28
VPS28-211ENST00000530790 EGFRP00533 1210 aa16.79■□□□□ 0.28
VPS28-211ENST00000530790 NBPF7P0C2Y1 421 aaPredicted RBP16.79■□□□□ 0.28
VPS28-211ENST00000530790 HSPA1AP0DMV8 641 aaKnown RBP16.79■□□□□ 0.28
VPS28-211ENST00000530790 HSPA1BP0DMV9 641 aaKnown RBP16.79■□□□□ 0.28
VPS28-211ENST00000530790 RBM26Q5T8P6 1007 aaKnown RBP16.79■□□□□ 0.28
VPS28-211ENST00000530790 FBXW7Q969H0 707 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms