RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 CST9Q5W186 159 aa16.7■□□□□ 0.26
CPSF1-204ENST00000529288 CYP4F22Q6NT55 531 aa16.7■□□□□ 0.26
CPSF1-204ENST00000529288 KSR2Q6VAB6 950 aa16.7■□□□□ 0.26
CPSF1-204ENST00000529288 WWC1Q8IX03 1113 aa16.7■□□□□ 0.26
CPSF1-204ENST00000529288 KCNQ5Q9NR82 932 aa16.7■□□□□ 0.26
CPSF1-204ENST00000529288 SLC4A2P04920 1241 aa16.69■□□□□ 0.26
CPSF1-204ENST00000529288 CTCFP49711 727 aaPredicted RBP16.69■□□□□ 0.26
CPSF1-204ENST00000529288 ANKRD18AQ8IVF6 992 aa16.69■□□□□ 0.26
CPSF1-204ENST00000529288 GGA1Q9UJY5 639 aa16.69■□□□□ 0.26
CPSF1-204ENST00000529288 TAF1P21675 1872 aa16.68■□□□□ 0.26
CPSF1-204ENST00000529288 ECE1P42892 770 aa16.68■□□□□ 0.26
CPSF1-204ENST00000529288 CCDC27Q2M243 656 aa16.68■□□□□ 0.26
CPSF1-204ENST00000529288 TBC1D10BQ4KMP7 808 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-204ENST00000529288 G2E3Q7L622 706 aa16.68■□□□□ 0.26
CPSF1-204ENST00000529288 SAMD7Q7Z3H4 446 aa16.68■□□□□ 0.26
CPSF1-204ENST00000529288 CAPNS2Q96L46 248 aa16.68■□□□□ 0.26
CPSF1-204ENST00000529288 CDHR2Q9BYE9 1310 aa16.68■□□□□ 0.26
CPSF1-204ENST00000529288 DDX60Q8IY21 1712 aaKnown RBP16.67■□□□□ 0.26
CPSF1-204ENST00000529288 ZNF316A6NFI3 1004 aaPredicted RBP16.67■□□□□ 0.26
CPSF1-204ENST00000529288 IGKV5-2P06315 115 aa16.67■□□□□ 0.26
CPSF1-204ENST00000529288 LBX1P52954 281 aa16.67■□□□□ 0.26
CPSF1-204ENST00000529288 CWF19L2Q2TBE0 894 aaKnown RBP16.67■□□□□ 0.26
CPSF1-204ENST00000529288 CDC37L1Q7L3B6 337 aa16.67■□□□□ 0.26
CPSF1-204ENST00000529288 USP48Q86UV5 1035 aa16.67■□□□□ 0.26
CPSF1-204ENST00000529288 WBP1LQ9NX94 342 aa16.67■□□□□ 0.26
CPSF1-204ENST00000529288 COL4A1P02462 1669 aa16.66■□□□□ 0.26
CPSF1-204ENST00000529288 MAP2K1Q02750 393 aaPredicted RBP16.66■□□□□ 0.26
CPSF1-204ENST00000529288 ZC3H15Q8WU90 426 aaKnown RBP16.66■□□□□ 0.26
CPSF1-204ENST00000529288 DPF2Q92785 391 aa16.66■□□□□ 0.26
CPSF1-204ENST00000529288 DUOX1Q9NRD9 1551 aa16.66■□□□□ 0.26
CPSF1-204ENST00000529288 TLL2Q9Y6L7 1015 aa16.66■□□□□ 0.26
CPSF1-204ENST00000529288 CTSWP56202 376 aa16.65■□□□□ 0.26
CPSF1-204ENST00000529288 DLK2Q6UY11 383 aa16.65■□□□□ 0.26
CPSF1-204ENST00000529288 CDC5LQ99459 802 aaKnown RBP16.65■□□□□ 0.26
CPSF1-204ENST00000529288 BEGAINQ9BUH8 593 aa16.65■□□□□ 0.26
CPSF1-204ENST00000529288 PODXL2Q9NZ53 605 aa16.65■□□□□ 0.26
CPSF1-204ENST00000529288 PGAP2Q9UHJ9 254 aa16.65■□□□□ 0.26
CPSF1-204ENST00000529288 NEURL1BA8MQ27 555 aa16.64■□□□□ 0.25
CPSF1-204ENST00000529288 AOC2O75106 756 aa16.64■□□□□ 0.25
CPSF1-204ENST00000529288 GREM2Q9H772 168 aa16.64■□□□□ 0.25
CPSF1-204ENST00000529288 PRDM10Q9NQV6 1147 aa16.64■□□□□ 0.25
CPSF1-204ENST00000529288 RTL9Q8NET4 1388 aa16.64■□□□□ 0.25
CPSF1-204ENST00000529288 EGFRP00533 1210 aa16.63■□□□□ 0.25
CPSF1-204ENST00000529288 ATP2B4P23634 1241 aa16.63■□□□□ 0.25
CPSF1-204ENST00000529288 RPS12P25398 132 aaKnown RBP16.63■□□□□ 0.25
CPSF1-204ENST00000529288 FKBP5Q13451 457 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-204ENST00000529288 UBE3BQ7Z3V4 1068 aa16.63■□□□□ 0.25
CPSF1-204ENST00000529288 FAM9BQ8IZU0 186 aa16.63■□□□□ 0.25
CPSF1-204ENST00000529288 TTLL11Q8NHH1 800 aa16.63■□□□□ 0.25
CPSF1-204ENST00000529288 DCPSQ96C86 337 aaKnown RBP16.63■□□□□ 0.25
CPSF1-204ENST00000529288 XDHP47989 1333 aa16.63■□□□□ 0.25
CPSF1-204ENST00000529288 IL16Q14005 1332 aa16.63■□□□□ 0.25
CPSF1-204ENST00000529288 FANCIQ9NVI1 1328 aa16.63■□□□□ 0.25
CPSF1-204ENST00000529288 HSPA8P11142 646 aaKnown RBP16.62■□□□□ 0.25
CPSF1-204ENST00000529288 FLIIQ13045 1269 aa16.62■□□□□ 0.25
CPSF1-204ENST00000529288 KRT26Q7Z3Y9 468 aa16.62■□□□□ 0.25
CPSF1-204ENST00000529288 SAPCD2Q86UD0 394 aa16.62■□□□□ 0.25
CPSF1-204ENST00000529288 FBXW7Q969H0 707 aa16.62■□□□□ 0.25
CPSF1-204ENST00000529288 WTIPA6NIX2 430 aaPredicted RBP16.61■□□□□ 0.25
CPSF1-204ENST00000529288 ADM5C9JUS6 153 aa16.61■□□□□ 0.25
CPSF1-204ENST00000529288 VIL1P09327 827 aaKnown RBP16.61■□□□□ 0.25
CPSF1-204ENST00000529288 EXOSC9Q06265 439 aaKnown RBP16.61■□□□□ 0.25
CPSF1-204ENST00000529288 KIF4BQ2VIQ3 1234 aa16.61■□□□□ 0.25
CPSF1-204ENST00000529288 LRRC37AA6NMS7 1700 aa16.61■□□□□ 0.25
CPSF1-204ENST00000529288 H7C1W4 665 aa16.6■□□□□ 0.25
CPSF1-204ENST00000529288 IGHMBP2P38935 993 aaKnown RBP16.6■□□□□ 0.25
CPSF1-204ENST00000529288 RSBN1LQ6PCB5 846 aaPredicted RBP16.6■□□□□ 0.25
CPSF1-204ENST00000529288 WDR63Q8IWG1 891 aa16.6■□□□□ 0.25
CPSF1-204ENST00000529288 DNAAF4Q8WXU2 420 aa16.6■□□□□ 0.25
CPSF1-204ENST00000529288 TSKSQ9UJT2 592 aa16.6■□□□□ 0.25
CPSF1-204ENST00000529288 MINPP1Q9UNW1 487 aa16.6■□□□□ 0.25
CPSF1-204ENST00000529288 VAMP4O75379 141 aa16.59■□□□□ 0.25
CPSF1-204ENST00000529288 HUNKP57058 714 aa16.59■□□□□ 0.25
CPSF1-204ENST00000529288 GCKRQ14397 625 aa16.59■□□□□ 0.25
CPSF1-204ENST00000529288 MYH16Q9H6N6 1097 aa16.59■□□□□ 0.25
CPSF1-204ENST00000529288 BSDC1Q9NW68 430 aaPredicted RBP16.59■□□□□ 0.25
CPSF1-204ENST00000529288 USP17L3A6NCW0 530 aa16.58■□□□□ 0.24
CPSF1-204ENST00000529288 USP17L4A6NCW7 530 aa16.58■□□□□ 0.24
CPSF1-204ENST00000529288 USP17L1Q7RTZ2 530 aa16.58■□□□□ 0.24
CPSF1-204ENST00000529288 SULF1Q8IWU6 871 aa16.58■□□□□ 0.24
CPSF1-204ENST00000529288 MPHOSPH8Q99549 860 aa16.58■□□□□ 0.24
CPSF1-204ENST00000529288 GGA3Q9NZ52 723 aa16.58■□□□□ 0.24
CPSF1-204ENST00000529288 ASTN2O75129 1339 aaPredicted RBP16.58■□□□□ 0.24
CPSF1-204ENST00000529288 ITGA6P23229 1130 aa16.57■□□□□ 0.24
CPSF1-204ENST00000529288 MAP2K2P36507 400 aa16.57■□□□□ 0.24
CPSF1-204ENST00000529288 CCT4P50991 539 aaKnown RBP16.57■□□□□ 0.24
CPSF1-204ENST00000529288 SCARF1Q14162 830 aa16.57■□□□□ 0.24
CPSF1-204ENST00000529288 FAM161AQ3B820 660 aa16.57■□□□□ 0.24
CPSF1-204ENST00000529288 NCBP3Q53F19 620 aaKnown RBP16.57■□□□□ 0.24
CPSF1-204ENST00000529288 PODNQ7Z5L7 613 aa16.57■□□□□ 0.24
CPSF1-204ENST00000529288 C2orf69Q8N8R5 385 aa16.57■□□□□ 0.24
CPSF1-204ENST00000529288 AGBL3Q8NEM8 1001 aa16.57■□□□□ 0.24
CPSF1-204ENST00000529288 CHMP3Q9Y3E7 222 aa16.57■□□□□ 0.24
CPSF1-204ENST00000529288 F6X3S4 739 aa16.56■□□□□ 0.24
CPSF1-204ENST00000529288 USP17L8P0C7I0 530 aa16.56■□□□□ 0.24
CPSF1-204ENST00000529288 KCNJ4P48050 445 aa16.56■□□□□ 0.24
CPSF1-204ENST00000529288 ANGEL2Q5VTE6 544 aaKnown RBP16.56■□□□□ 0.24
CPSF1-204ENST00000529288 LINS1Q8NG48 757 aa16.56■□□□□ 0.24
CPSF1-204ENST00000529288 MXD3Q9BW11 206 aa16.56■□□□□ 0.24
CPSF1-204ENST00000529288 GBA2Q9HCG7 927 aaPredicted RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms