RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 TCIRG1Q13488 830 aa13.71□□□□□ -0.21
CPSF1-203ENST00000527916 DCAF8Q5TAQ9 597 aa13.71□□□□□ -0.21
CPSF1-203ENST00000527916 LRP10Q7Z4F1 713 aa13.71□□□□□ -0.21
CPSF1-203ENST00000527916 DUOX1Q9NRD9 1551 aa13.71□□□□□ -0.22
CPSF1-203ENST00000527916 CHL1O00533 1208 aa13.7□□□□□ -0.22
CPSF1-203ENST00000527916 PDIA6Q15084 440 aa13.7□□□□□ -0.22
CPSF1-203ENST00000527916 DOK7Q18PE1 504 aa13.7□□□□□ -0.22
CPSF1-203ENST00000527916 COPS6Q7L5N1 327 aa13.7□□□□□ -0.22
CPSF1-203ENST00000527916 ZNF296Q8WUU4 475 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-203ENST00000527916 ZC3H12CQ9C0D7 883 aaKnown RBP13.7□□□□□ -0.22
CPSF1-203ENST00000527916 POLLQ9UGP5 575 aa13.7□□□□□ -0.22
CPSF1-203ENST00000527916 TRIM35Q9UPQ4 493 aa13.7□□□□□ -0.22
CPSF1-203ENST00000527916 TAF1P21675 1872 aa13.7□□□□□ -0.22
CPSF1-203ENST00000527916 VIL1P09327 827 aaKnown RBP13.69□□□□□ -0.22
CPSF1-203ENST00000527916 AIMP1Q12904 312 aaKnown RBP13.69□□□□□ -0.22
CPSF1-203ENST00000527916 NOM1Q5C9Z4 860 aaKnown RBP13.69□□□□□ -0.22
CPSF1-203ENST00000527916 FBXO46Q6PJ61 603 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-203ENST00000527916 CCDC146Q8IYE0 955 aa13.69□□□□□ -0.22
CPSF1-203ENST00000527916 KCNQ5Q9NR82 932 aa13.69□□□□□ -0.22
CPSF1-203ENST00000527916 LRRC37AA6NMS7 1700 aa13.69□□□□□ -0.22
CPSF1-203ENST00000527916 RTL9Q8NET4 1388 aa13.69□□□□□ -0.22
CPSF1-203ENST00000527916 TBC1D8O95759 1140 aa13.68□□□□□ -0.22
CPSF1-203ENST00000527916 ANXA1P04083 346 aa13.68□□□□□ -0.22
CPSF1-203ENST00000527916 GPSM2P81274 684 aa13.68□□□□□ -0.22
CPSF1-203ENST00000527916 SCARF1Q14162 830 aa13.68□□□□□ -0.22
CPSF1-203ENST00000527916 NEUROD2Q15784 382 aa13.68□□□□□ -0.22
CPSF1-203ENST00000527916 PROSER3Q2NL68 480 aa13.68□□□□□ -0.22
CPSF1-203ENST00000527916 ANGEL2Q5VTE6 544 aaKnown RBP13.68□□□□□ -0.22
CPSF1-203ENST00000527916 XAGE3Q8WTP9 111 aa13.68□□□□□ -0.22
CPSF1-203ENST00000527916 NECTIN2Q92692 538 aa13.68□□□□□ -0.22
CPSF1-203ENST00000527916 PAPPA2Q9BXP8 1791 aa13.68□□□□□ -0.22
CPSF1-203ENST00000527916 DDX60Q8IY21 1712 aaKnown RBP13.67□□□□□ -0.22
CPSF1-203ENST00000527916 GPR25O00155 361 aa13.67□□□□□ -0.22
CPSF1-203ENST00000527916 ZNF280AP59817 542 aaPredicted RBP13.67□□□□□ -0.22
CPSF1-203ENST00000527916 SF3B3Q15393 1217 aaKnown RBP13.67□□□□□ -0.22
CPSF1-203ENST00000527916 AGBL3Q8NEM8 1001 aa13.67□□□□□ -0.22
CPSF1-203ENST00000527916 TBC1D16Q8TBP0 767 aa13.67□□□□□ -0.22
CPSF1-203ENST00000527916 CELF1Q92879 486 aaKnown RBP13.67□□□□□ -0.22
CPSF1-203ENST00000527916 ASTN2O75129 1339 aaPredicted RBP13.66□□□□□ -0.22
CPSF1-203ENST00000527916 PITPNM2Q9BZ72 1349 aa13.66□□□□□ -0.22
CPSF1-203ENST00000527916 CENPFP49454 3210 aa13.66□□□□□ -0.22
CPSF1-203ENST00000527916 TM4SF4P48230 202 aa13.66□□□□□ -0.22
CPSF1-203ENST00000527916 SREBF2Q12772 1141 aa13.66□□□□□ -0.22
CPSF1-203ENST00000527916 HABP4Q5JVS0 413 aaKnown RBP13.66□□□□□ -0.22
CPSF1-203ENST00000527916 FKTNO75072 461 aa13.65□□□□□ -0.22
CPSF1-203ENST00000527916 HOXB7P09629 217 aa13.65□□□□□ -0.22
CPSF1-203ENST00000527916 USP17L8P0C7I0 530 aa13.65□□□□□ -0.22
CPSF1-203ENST00000527916 RPS8P62241 208 aaKnown RBP13.65□□□□□ -0.22
CPSF1-203ENST00000527916 TTLL12Q14166 644 aaPredicted RBP13.65□□□□□ -0.22
CPSF1-203ENST00000527916 RSBN1LQ6PCB5 846 aaPredicted RBP13.65□□□□□ -0.22
CPSF1-203ENST00000527916 FAM89AQ96GI7 184 aa13.65□□□□□ -0.22
CPSF1-203ENST00000527916 ANKIB1Q9P2G1 1089 aa13.65□□□□□ -0.22
CPSF1-203ENST00000527916 HTTP42858 3142 aa13.65□□□□□ -0.22
CPSF1-203ENST00000527916 KIAA0100Q14667 2235 aaKnown RBP13.64□□□□□ -0.23
CPSF1-203ENST00000527916 SCN9AQ15858 1988 aa13.64□□□□□ -0.23
CPSF1-203ENST00000527916 UBE2Q2LH0YL09 131 aa13.64□□□□□ -0.23
CPSF1-203ENST00000527916 UFL1O94874 794 aa13.64□□□□□ -0.23
CPSF1-203ENST00000527916 NF2P35240 595 aa13.64□□□□□ -0.23
CPSF1-203ENST00000527916 MYOZ2Q9NPC6 264 aa13.64□□□□□ -0.23
CPSF1-203ENST00000527916 PODXL2Q9NZ53 605 aa13.64□□□□□ -0.23
CPSF1-203ENST00000527916 GGA1Q9UJY5 639 aa13.64□□□□□ -0.23
CPSF1-203ENST00000527916 ZNF609O15014 1411 aa13.64□□□□□ -0.23
CPSF1-203ENST00000527916 ZNF853P0CG23 659 aa13.63□□□□□ -0.23
CPSF1-203ENST00000527916 HSP90B1P14625 803 aaKnown RBP13.63□□□□□ -0.23
CPSF1-203ENST00000527916 CALD1Q05682 793 aaKnown RBP13.63□□□□□ -0.23
CPSF1-203ENST00000527916 INTS3Q68E01 1043 aaKnown RBP13.63□□□□□ -0.23
CPSF1-203ENST00000527916 PLBD2Q8NHP8 589 aa13.63□□□□□ -0.23
CPSF1-203ENST00000527916 ZNF428Q96B54 188 aa13.63□□□□□ -0.23
CPSF1-203ENST00000527916 ZNF316A6NFI3 1004 aaPredicted RBP13.62□□□□□ -0.23
CPSF1-203ENST00000527916 APAF1O14727 1248 aa13.62□□□□□ -0.23
CPSF1-203ENST00000527916 ALDH1A1P00352 501 aa13.62□□□□□ -0.23
CPSF1-203ENST00000527916 ANKRD13DQ6ZTN6 518 aa13.62□□□□□ -0.23
CPSF1-203ENST00000527916 MOB2Q70IA6 237 aa13.62□□□□□ -0.23
CPSF1-203ENST00000527916 CFHR5Q9BXR6 569 aa13.62□□□□□ -0.23
CPSF1-203ENST00000527916 LAS1LQ9Y4W2 734 aaKnown RBP13.62□□□□□ -0.23
CPSF1-203ENST00000527916 USP17L3A6NCW0 530 aa13.61□□□□□ -0.23
CPSF1-203ENST00000527916 USP17L4A6NCW7 530 aa13.61□□□□□ -0.23
CPSF1-203ENST00000527916 IRS4O14654 1257 aaPredicted RBP13.61□□□□□ -0.23
CPSF1-203ENST00000527916 USP17L1Q7RTZ2 530 aa13.61□□□□□ -0.23
CPSF1-203ENST00000527916 OGFOD1Q8N543 542 aa13.61□□□□□ -0.23
CPSF1-203ENST00000527916 ISCA1Q9BUE6 129 aa13.61□□□□□ -0.23
CPSF1-203ENST00000527916 ATP5J2-PTCD1G3V325 749 aa13.6□□□□□ -0.23
CPSF1-203ENST00000527916 MKRN3Q13064 507 aaKnown RBP13.6□□□□□ -0.23
CPSF1-203ENST00000527916 KRT24Q2M2I5 525 aa13.6□□□□□ -0.23
CPSF1-203ENST00000527916 RTL5Q5HYW3 569 aaPredicted RBP13.6□□□□□ -0.23
CPSF1-203ENST00000527916 ARMC9Q7Z3E5 817 aa13.6□□□□□ -0.23
CPSF1-203ENST00000527916 PODNQ7Z5L7 613 aa13.6□□□□□ -0.23
CPSF1-203ENST00000527916 GMLQ99445 158 aa13.6□□□□□ -0.23
CPSF1-203ENST00000527916 IFT57Q9NWB7 429 aa13.6□□□□□ -0.23
CPSF1-203ENST00000527916 DBF4Q9UBU7 674 aaPredicted RBP13.6□□□□□ -0.23
CPSF1-203ENST00000527916 CEP290O15078 2479 aa13.59□□□□□ -0.23
CPSF1-203ENST00000527916 GNAI1P63096 354 aa13.59□□□□□ -0.23
CPSF1-203ENST00000527916 TRIM28Q13263 835 aaKnown RBP13.59□□□□□ -0.23
CPSF1-203ENST00000527916 NCBP3Q53F19 620 aaKnown RBP13.59□□□□□ -0.23
CPSF1-203ENST00000527916 HDGFL1Q5TGJ6 251 aa13.59□□□□□ -0.23
CPSF1-203ENST00000527916 PRAMEF18Q5VWM3 479 aa13.59□□□□□ -0.23
CPSF1-203ENST00000527916 MBIPQ9NS73 344 aa13.59□□□□□ -0.23
CPSF1-203ENST00000527916 CHPF2Q9P2E5 772 aa13.59□□□□□ -0.23
CPSF1-203ENST00000527916 TRIM17Q9Y577 477 aa13.59□□□□□ -0.23
CPSF1-203ENST00000527916 BRCA2P51587 3418 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms