RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CTDSPL2Q05D32 466 aa6.87□□□□□ -1.31
CD44-225ENST00000527326 DNAJC21Q5F1R6 531 aaKnown RBP6.87□□□□□ -1.31
CD44-225ENST00000527326 JAKMIP3Q5VZ66 844 aa6.87□□□□□ -1.31
CD44-225ENST00000527326 FNBP4Q8N3X1 1017 aaPredicted RBP6.87□□□□□ -1.31
CD44-225ENST00000527326 GPT2Q8TD30 523 aa6.87□□□□□ -1.31
CD44-225ENST00000527326 FAM107BQ9H098 131 aa6.87□□□□□ -1.31
CD44-225ENST00000527326 NUCKS1Q9H1E3 243 aaKnown RBP6.87□□□□□ -1.31
CD44-225ENST00000527326 TTC12Q9H892 705 aaPredicted RBP6.87□□□□□ -1.31
CD44-225ENST00000527326 TMEM63CQ9P1W3 806 aa6.87□□□□□ -1.31
CD44-225ENST00000527326 SENP3-EIF4A1A0A087X0R7 540 aa6.86□□□□□ -1.31
CD44-225ENST00000527326 SGSM2O43147 1006 aa6.86□□□□□ -1.31
CD44-225ENST00000527326 SMC2O95347 1197 aa6.86□□□□□ -1.31
CD44-225ENST00000527326 TNNT1P13805 278 aa6.86□□□□□ -1.31
CD44-225ENST00000527326 VEGFBP49765 207 aa6.86□□□□□ -1.31
CD44-225ENST00000527326 SLFN5Q08AF3 891 aa6.86□□□□□ -1.31
CD44-225ENST00000527326 SART3Q15020 963 aaKnown RBP6.86□□□□□ -1.31
CD44-225ENST00000527326 ANKRD23Q86SG2 305 aa6.86□□□□□ -1.31
CD44-225ENST00000527326 PROSER2Q86WR7 435 aaPredicted RBP6.86□□□□□ -1.31
CD44-225ENST00000527326 FMNL3Q8IVF7 1028 aa6.86□□□□□ -1.31
CD44-225ENST00000527326 TRMT2AQ8IZ69 625 aaKnown RBP6.86□□□□□ -1.31
CD44-225ENST00000527326 ERCC4Q92889 916 aaPredicted RBP6.86□□□□□ -1.31
CD44-225ENST00000527326 EXOC4Q96A65 974 aa6.86□□□□□ -1.31
CD44-225ENST00000527326 ITPKCQ96DU7 683 aa6.86□□□□□ -1.31
CD44-225ENST00000527326 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.86□□□□□ -1.31
CD44-225ENST00000527326 ARGLU1Q9NWB6 273 aaPredicted RBP6.86□□□□□ -1.31
CD44-225ENST00000527326 PCF11O94913 1555 aaKnown RBP6.86□□□□□ -1.31
CD44-225ENST00000527326 DIP2BQ9P265 1576 aa6.86□□□□□ -1.31
CD44-225ENST00000527326 REREQ9P2R6 1566 aa6.86□□□□□ -1.31
CD44-225ENST00000527326 ABCC10Q5T3U5 1492 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 PRPF40AO75400 957 aaKnown RBP6.85□□□□□ -1.31
CD44-225ENST00000527326 RPS6KA5O75582 802 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 EIF3JO75822 258 aaKnown RBP6.85□□□□□ -1.31
CD44-225ENST00000527326 C6orf118Q5T5N4 469 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 FBXO31Q5XUX0 539 aaPredicted RBP6.85□□□□□ -1.31
CD44-225ENST00000527326 FBXO38Q6PIJ6 1188 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 LEKR1Q6ZMV7 388 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 VASH1Q7L8A9 365 aaPredicted RBP6.85□□□□□ -1.31
CD44-225ENST00000527326 EFCAB13Q8IY85 973 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 C17orf53Q8N3J3 647 aaPredicted RBP6.85□□□□□ -1.31
CD44-225ENST00000527326 RNF214Q8ND24 703 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 NEK11Q8NG66 645 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 MKL1Q969V6 931 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 C1QTNF2Q9BXJ5 285 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 CARD14Q9BXL6 1004 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 TEX13AQ9BXU3 409 aaPredicted RBP6.85□□□□□ -1.31
CD44-225ENST00000527326 A1CFQ9NQ94 594 aaKnown RBP6.85□□□□□ -1.31
CD44-225ENST00000527326 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.85□□□□□ -1.31
CD44-225ENST00000527326 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.85□□□□□ -1.31
CD44-225ENST00000527326 ERCC6L2Q5T890 1561 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 FAM135AQ9P2D6 1515 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 RALGAPBQ86X10 1494 aa6.85□□□□□ -1.31
CD44-225ENST00000527326 ANKRD30BQ9BXX2 1392 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 ELP1O95163 1332 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 CCDC171Q6TFL3 1326 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 TSPOAP1O95153 1857 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 ZBTB7CA1YPR0 619 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 ANKRD18BA2A2Z9 1011 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 PLEKHD1A6NEE1 506 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 SOBPA7XYQ1 873 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 COQ9O75208 318 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 H2AFXP16104 143 aaPredicted RBP6.84□□□□□ -1.31
CD44-225ENST00000527326 ACTN2P35609 894 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 HDAC1Q13547 482 aaPredicted RBP6.84□□□□□ -1.31
CD44-225ENST00000527326 ZC3H12AQ5D1E8 599 aaKnown RBP6.84□□□□□ -1.31
CD44-225ENST00000527326 SH3BP5LQ7L8J4 393 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 SH3RF1Q7Z6J0 888 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 NPAS3Q8IXF0 933 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 ZNF513Q8N8E2 541 aaPredicted RBP6.84□□□□□ -1.31
CD44-225ENST00000527326 GAS2L2Q8NHY3 880 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 LRRN4Q8WUT4 740 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 SUDS3Q9H7L9 328 aaPredicted RBP6.84□□□□□ -1.31
CD44-225ENST00000527326 STK17AQ9UEE5 414 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 MKRN1Q9UHC7 482 aaKnown RBP6.84□□□□□ -1.31
CD44-225ENST00000527326 LCMT1Q9UIC8 334 aa6.84□□□□□ -1.31
CD44-225ENST00000527326 PTPRKQ15262 1439 aa6.84□□□□□ -1.32
CD44-225ENST00000527326 PRG4Q92954 1404 aaPredicted RBP6.84□□□□□ -1.32
CD44-225ENST00000527326 CUL7Q14999 1698 aa6.84□□□□□ -1.32
CD44-225ENST00000527326 ABCC2Q92887 1545 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 TMCO5BA8MYB1 307 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 UPP2O95045 317 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 SLU7O95391 586 aaKnown RBP6.83□□□□□ -1.32
CD44-225ENST00000527326 PNMA6AP0CW24 399 aaPredicted RBP6.83□□□□□ -1.32
CD44-225ENST00000527326 FSHRP23945 695 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 CORO7P57737 925 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 AP1ARQ63HQ0 302 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 FILIP1Q7Z7B0 1213 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 ERC1Q8IUD2 1116 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 GIMAP7Q8NHV1 300 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 DNAAF4Q8WXU2 420 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 IRF7Q92985 503 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 BORCS6Q96GS4 357 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 UBXN6Q9BZV1 441 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 ZSCAN16Q9H4T2 348 aaPredicted RBP6.83□□□□□ -1.32
CD44-225ENST00000527326 ETAA1Q9NY74 926 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 PYCARDQ9ULZ3 195 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 FHOD1Q9Y613 1164 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 FHOD3Q2V2M9 1422 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 UHRF1BP1Q6BDS2 1440 aa6.83□□□□□ -1.32
CD44-225ENST00000527326 A0A087WUV0 522 aaPredicted RBP6.82□□□□□ -1.32
CD44-225ENST00000527326 EIF3CLB5ME19 914 aaKnown RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms