RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 TNIP1Q15025 636 aa13.34□□□□□ -0.27
PRPF40B-204ENST00000527253 BEND3Q5T5X7 828 aa13.34□□□□□ -0.27
PRPF40B-204ENST00000527253 USP50Q70EL3 339 aaPredicted RBP13.34□□□□□ -0.27
PRPF40B-204ENST00000527253 ANKRD18AQ8IVF6 992 aa13.34□□□□□ -0.27
PRPF40B-204ENST00000527253 LINS1Q8NG48 757 aa13.34□□□□□ -0.27
PRPF40B-204ENST00000527253 PLA2G12BQ9BX93 195 aa13.34□□□□□ -0.27
PRPF40B-204ENST00000527253 MKRN1Q9UHC7 482 aaKnown RBP13.34□□□□□ -0.27
PRPF40B-204ENST00000527253 ZBTB12Q9Y330 459 aaPredicted RBP13.34□□□□□ -0.27
PRPF40B-204ENST00000527253 PSMD14O00487 310 aa13.33□□□□□ -0.28
PRPF40B-204ENST00000527253 ECE2O60344 883 aa13.33□□□□□ -0.28
PRPF40B-204ENST00000527253 UFL1O94874 794 aa13.33□□□□□ -0.28
PRPF40B-204ENST00000527253 EYA3Q99504 573 aa13.33□□□□□ -0.28
PRPF40B-204ENST00000527253 ADARB2Q9NS39 739 aaKnown RBP13.33□□□□□ -0.28
PRPF40B-204ENST00000527253 TMEM88BA6NKF7 163 aa13.32□□□□□ -0.28
PRPF40B-204ENST00000527253 TRAF5O00463 557 aa13.32□□□□□ -0.28
PRPF40B-204ENST00000527253 CSF1RP07333 972 aa13.32□□□□□ -0.28
PRPF40B-204ENST00000527253 TRPM4Q8TD43 1214 aa13.32□□□□□ -0.28
PRPF40B-204ENST00000527253 BCL2L13Q9BXK5 485 aa13.32□□□□□ -0.28
PRPF40B-204ENST00000527253 BSDC1Q9NW68 430 aaPredicted RBP13.32□□□□□ -0.28
PRPF40B-204ENST00000527253 ANKIB1Q9P2G1 1089 aa13.32□□□□□ -0.28
PRPF40B-204ENST00000527253 CNOT7Q9UIV1 285 aaKnown RBP13.32□□□□□ -0.28
PRPF40B-204ENST00000527253 GGA1Q9UJY5 639 aa13.32□□□□□ -0.28
PRPF40B-204ENST00000527253 MINPP1Q9UNW1 487 aa13.32□□□□□ -0.28
PRPF40B-204ENST00000527253 SCN9AQ15858 1988 aa13.32□□□□□ -0.28
PRPF40B-204ENST00000527253 FAM161AQ3B820 660 aa13.31□□□□□ -0.28
PRPF40B-204ENST00000527253 CDC5LQ99459 802 aaKnown RBP13.31□□□□□ -0.28
PRPF40B-204ENST00000527253 ZC3H12CQ9C0D7 883 aaKnown RBP13.31□□□□□ -0.28
PRPF40B-204ENST00000527253 PGAP2Q9UHJ9 254 aa13.31□□□□□ -0.28
PRPF40B-204ENST00000527253 XDHP47989 1333 aa13.31□□□□□ -0.28
PRPF40B-204ENST00000527253 MYH3P11055 1940 aa13.31□□□□□ -0.28
PRPF40B-204ENST00000527253 EGFRP00533 1210 aa13.3□□□□□ -0.28
PRPF40B-204ENST00000527253 ATP2B4P23634 1241 aa13.3□□□□□ -0.28
PRPF40B-204ENST00000527253 FOXO4P98177 505 aa13.3□□□□□ -0.28
PRPF40B-204ENST00000527253 SLFN5Q08AF3 891 aa13.3□□□□□ -0.28
PRPF40B-204ENST00000527253 EPHA10Q5JZY3 1008 aa13.3□□□□□ -0.28
PRPF40B-204ENST00000527253 CST9Q5W186 159 aa13.3□□□□□ -0.28
PRPF40B-204ENST00000527253 MICALL2Q8IY33 904 aa13.3□□□□□ -0.28
PRPF40B-204ENST00000527253 DPF2Q92785 391 aa13.3□□□□□ -0.28
PRPF40B-204ENST00000527253 CDCA7LQ96GN5 454 aa13.3□□□□□ -0.28
PRPF40B-204ENST00000527253 CNTNAP1P78357 1384 aa13.3□□□□□ -0.28
PRPF40B-204ENST00000527253 VIL1P09327 827 aaKnown RBP13.29□□□□□ -0.28
PRPF40B-204ENST00000527253 ITGA6P23229 1130 aa13.29□□□□□ -0.28
PRPF40B-204ENST00000527253 VEGFBP49765 207 aa13.29□□□□□ -0.28
PRPF40B-204ENST00000527253 DLK2Q6UY11 383 aa13.29□□□□□ -0.28
PRPF40B-204ENST00000527253 SAMD7Q7Z3H4 446 aa13.29□□□□□ -0.28
PRPF40B-204ENST00000527253 MRPL50Q8N5N7 158 aaKnown RBP13.29□□□□□ -0.28
PRPF40B-204ENST00000527253 SPEF2Q9C093 1822 aa13.28□□□□□ -0.28
PRPF40B-204ENST00000527253 H7C1D1 291 aa13.28□□□□□ -0.28
PRPF40B-204ENST00000527253 CCT4P50991 539 aaKnown RBP13.28□□□□□ -0.28
PRPF40B-204ENST00000527253 TXNRD3Q86VQ6 643 aa13.28□□□□□ -0.28
PRPF40B-204ENST00000527253 GLIS2Q9BZE0 524 aaPredicted RBP13.28□□□□□ -0.28
PRPF40B-204ENST00000527253 RASSF10A6NK89 507 aa13.27□□□□□ -0.29
PRPF40B-204ENST00000527253 E9PSI1 815 aa13.27□□□□□ -0.29
PRPF40B-204ENST00000527253 CCER2I3L3R5 266 aa13.27□□□□□ -0.29
PRPF40B-204ENST00000527253 HSPA1AP0DMV8 641 aaKnown RBP13.27□□□□□ -0.29
PRPF40B-204ENST00000527253 HSPA1BP0DMV9 641 aaKnown RBP13.27□□□□□ -0.29
PRPF40B-204ENST00000527253 KLRK1P26718 216 aa13.27□□□□□ -0.29
PRPF40B-204ENST00000527253 IGHMBP2P38935 993 aaKnown RBP13.27□□□□□ -0.29
PRPF40B-204ENST00000527253 TBC1D10BQ4KMP7 808 aaPredicted RBP13.27□□□□□ -0.29
PRPF40B-204ENST00000527253 TRMT2AQ8IZ69 625 aaKnown RBP13.27□□□□□ -0.29
PRPF40B-204ENST00000527253 ZC3H15Q8WU90 426 aaKnown RBP13.27□□□□□ -0.29
PRPF40B-204ENST00000527253 SSH1Q8WYL5 1049 aa13.27□□□□□ -0.29
PRPF40B-204ENST00000527253 GRM8O00222 908 aa13.26□□□□□ -0.29
PRPF40B-204ENST00000527253 ALDH1L1O75891 902 aa13.26□□□□□ -0.29
PRPF40B-204ENST00000527253 RPS12P25398 132 aaKnown RBP13.26□□□□□ -0.29
PRPF40B-204ENST00000527253 RBM26Q5T8P6 1007 aaKnown RBP13.26□□□□□ -0.29
PRPF40B-204ENST00000527253 SLC4A10Q6U841 1118 aa13.26□□□□□ -0.29
PRPF40B-204ENST00000527253 KAZALD1Q96I82 304 aa13.26□□□□□ -0.29
PRPF40B-204ENST00000527253 GMLQ99445 158 aa13.26□□□□□ -0.29
PRPF40B-204ENST00000527253 PCNTO95613 3336 aa13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 MED23Q9ULK4 1368 aa13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 ASTN2O75129 1339 aaPredicted RBP13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 IRS2Q9Y4H2 1338 aa13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 ANKRD18BA2A2Z9 1011 aa13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 G3V3G9 751 aa13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 SNAP23O00161 211 aa13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 DEFB115Q30KQ5 88 aa13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 DCAF8Q5TAQ9 597 aa13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 COL13A1Q5TAT6 717 aaPredicted RBP13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 RSBN1LQ6PCB5 846 aaPredicted RBP13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 LMBR1LQ6UX01 489 aa13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 USP48Q86UV5 1035 aa13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 ZNF594Q96JF6 807 aaPredicted RBP13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 MXD3Q9BW11 206 aa13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 SRCIN1Q9C0H9 1055 aa13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 ABT1Q9ULW3 272 aaKnown RBP13.25□□□□□ -0.29
PRPF40B-204ENST00000527253 ZNF804BA4D1E1 1349 aa13.24□□□□□ -0.29
PRPF40B-204ENST00000527253 POLR2AP24928 1970 aaKnown RBP13.24□□□□□ -0.29
PRPF40B-204ENST00000527253 CELF2O95319 508 aaKnown RBP13.24□□□□□ -0.29
PRPF40B-204ENST00000527253 NBPF7P0C2Y1 421 aaPredicted RBP13.24□□□□□ -0.29
PRPF40B-204ENST00000527253 ZNF280AP59817 542 aaPredicted RBP13.24□□□□□ -0.29
PRPF40B-204ENST00000527253 CHRNDQ07001 517 aa13.24□□□□□ -0.29
PRPF40B-204ENST00000527253 IFFO2Q5TF58 517 aa13.24□□□□□ -0.29
PRPF40B-204ENST00000527253 CDC37L1Q7L3B6 337 aa13.24□□□□□ -0.29
PRPF40B-204ENST00000527253 PODNQ7Z5L7 613 aa13.24□□□□□ -0.29
PRPF40B-204ENST00000527253 HELBQ8NG08 1087 aaPredicted RBP13.24□□□□□ -0.29
PRPF40B-204ENST00000527253 SUCLG2Q96I99 432 aa13.24□□□□□ -0.29
PRPF40B-204ENST00000527253 MPHOSPH8Q99549 860 aa13.24□□□□□ -0.29
PRPF40B-204ENST00000527253 ANKRD2Q9GZV1 360 aa13.24□□□□□ -0.29
PRPF40B-204ENST00000527253 LEMD3Q9Y2U8 911 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms