RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 GSK3AP49840 483 aa8.75□□□□□ -1.01
CD44-223ENST00000526553 HYAL2Q12891 473 aa8.75□□□□□ -1.01
CD44-223ENST00000526553 COL9A3Q14050 684 aaPredicted RBP8.75□□□□□ -1.01
CD44-223ENST00000526553 PERM1Q5SV97 790 aa8.75□□□□□ -1.01
CD44-223ENST00000526553 ELMSAN1Q6PJG2 1045 aa8.75□□□□□ -1.01
CD44-223ENST00000526553 KCTD17Q8N5Z5 321 aa8.75□□□□□ -1.01
CD44-223ENST00000526553 SNX29Q8TEQ0 813 aa8.75□□□□□ -1.01
CD44-223ENST00000526553 TTC9Q92623 222 aa8.75□□□□□ -1.01
CD44-223ENST00000526553 JPH1Q9HDC5 661 aaPredicted RBP8.75□□□□□ -1.01
CD44-223ENST00000526553 NOP53Q9NZM5 478 aaKnown RBP8.75□□□□□ -1.01
CD44-223ENST00000526553 RGS9O75916 674 aaPredicted RBP8.74□□□□□ -1.01
CD44-223ENST00000526553 GHRHP01286 108 aa8.74□□□□□ -1.01
CD44-223ENST00000526553 NID1P14543 1247 aa8.74□□□□□ -1.01
CD44-223ENST00000526553 PDE3BQ13370 1112 aa8.74□□□□□ -1.01
CD44-223ENST00000526553 C8orf86Q6ZUL3 223 aa8.74□□□□□ -1.01
CD44-223ENST00000526553 HFE2Q6ZVN8 426 aa8.74□□□□□ -1.01
CD44-223ENST00000526553 ALYREFQ86V81 257 aaKnown RBP8.74□□□□□ -1.01
CD44-223ENST00000526553 NUDT8Q8WV74 236 aa8.74□□□□□ -1.01
CD44-223ENST00000526553 PMEPA1Q969W9 287 aa8.74□□□□□ -1.01
CD44-223ENST00000526553 TRIM11Q96F44 468 aa8.74□□□□□ -1.01
CD44-223ENST00000526553 FAM129BQ96TA1 746 aa8.74□□□□□ -1.01
CD44-223ENST00000526553 RBSNQ9H1K0 784 aa8.74□□□□□ -1.01
CD44-223ENST00000526553 CNTN3Q9P232 1028 aa8.74□□□□□ -1.01
CD44-223ENST00000526553 TNFRSF21O75509 655 aa8.73□□□□□ -1.01
CD44-223ENST00000526553 CYP2E1P05181 493 aaPredicted RBP8.73□□□□□ -1.01
CD44-223ENST00000526553 CHRDQ9H2X0 955 aa8.73□□□□□ -1.01
CD44-223ENST00000526553 BIN2Q9UBW5 565 aaPredicted RBP8.73□□□□□ -1.01
CD44-223ENST00000526553 J3QW42 95 aa8.72□□□□□ -1.01
CD44-223ENST00000526553 AFF1P51825 1210 aaKnown RBP8.72□□□□□ -1.01
CD44-223ENST00000526553 RASSF7Q02833 373 aa8.72□□□□□ -1.01
CD44-223ENST00000526553 COL13A1Q5TAT6 717 aaPredicted RBP8.72□□□□□ -1.01
CD44-223ENST00000526553 C1orf127Q8N9H9 656 aa8.72□□□□□ -1.01
CD44-223ENST00000526553 PLD4Q96BZ4 506 aa8.72□□□□□ -1.01
CD44-223ENST00000526553 RBCK1Q9BYM8 510 aa8.72□□□□□ -1.01
CD44-223ENST00000526553 SMG9Q9H0W8 520 aaKnown RBP8.72□□□□□ -1.01
CD44-223ENST00000526553 SUV39H2Q9H5I1 410 aa8.72□□□□□ -1.01
CD44-223ENST00000526553 SPDYE3A6NKU9 549 aa8.71□□□□□ -1.02
CD44-223ENST00000526553 PHACTR2O75167 634 aa8.71□□□□□ -1.02
CD44-223ENST00000526553 CES1P23141 567 aa8.71□□□□□ -1.02
CD44-223ENST00000526553 GRIK5Q16478 980 aa8.71□□□□□ -1.02
CD44-223ENST00000526553 AEBP1Q8IUX7 1158 aa8.71□□□□□ -1.02
CD44-223ENST00000526553 SPACA7Q96KW9 195 aa8.71□□□□□ -1.02
CD44-223ENST00000526553 PLVAPQ9BX97 442 aa8.71□□□□□ -1.02
CD44-223ENST00000526553 KANSL3Q9P2N6 904 aa8.71□□□□□ -1.02
CD44-223ENST00000526553 DCTN4Q9UJW0 460 aa8.71□□□□□ -1.02
CD44-223ENST00000526553 COL8A1P27658 744 aa8.7□□□□□ -1.02
CD44-223ENST00000526553 DMRTB1Q96MA1 342 aa8.7□□□□□ -1.02
CD44-223ENST00000526553 SALL4Q9UJQ4 1053 aa8.7□□□□□ -1.02
CD44-223ENST00000526553 FOXD3Q9UJU5 478 aaPredicted RBP8.7□□□□□ -1.02
CD44-223ENST00000526553 IGHA2P01877 340 aa8.69□□□□□ -1.02
CD44-223ENST00000526553 NEFLP07196 543 aa8.69□□□□□ -1.02
CD44-223ENST00000526553 NCAPG2Q86XI2 1143 aa8.69□□□□□ -1.02
CD44-223ENST00000526553 CEP120Q8N960 986 aa8.69□□□□□ -1.02
CD44-223ENST00000526553 GDF11O95390 407 aa8.68□□□□□ -1.02
CD44-223ENST00000526553 ILDR2Q71H61 639 aa8.68□□□□□ -1.02
CD44-223ENST00000526553 CACTIN-AS1Q8N1I8 211 aa8.68□□□□□ -1.02
CD44-223ENST00000526553 TMEM151AQ8N4L1 468 aa8.68□□□□□ -1.02
CD44-223ENST00000526553 ALKBH8Q96BT7 664 aaKnown RBP8.68□□□□□ -1.02
CD44-223ENST00000526553 DCAF5Q96JK2 942 aa8.68□□□□□ -1.02
CD44-223ENST00000526553 AMOTL2Q9Y2J4 779 aa8.68□□□□□ -1.02
CD44-223ENST00000526553 EREGO14944 169 aa8.67□□□□□ -1.02
CD44-223ENST00000526553 GPR182O15218 404 aa8.67□□□□□ -1.02
CD44-223ENST00000526553 ATP11AP98196 1134 aa8.67□□□□□ -1.02
CD44-223ENST00000526553 MSL1Q68DK7 614 aa8.67□□□□□ -1.02
CD44-223ENST00000526553 ZFYVE28Q9HCC9 887 aa8.67□□□□□ -1.02
CD44-223ENST00000526553 SMNDC1O75940 238 aaKnown RBP eCLIP8.66□□□□□ -1.02
CD44-223ENST00000526553 SPATA31C1P0DKV0 1188 aa8.66□□□□□ -1.02
CD44-223ENST00000526553 EDN3P14138 238 aa8.66□□□□□ -1.02
CD44-223ENST00000526553 MAPK1P28482 360 aa8.66□□□□□ -1.02
CD44-223ENST00000526553 TMC1Q8TDI8 760 aa8.66□□□□□ -1.02
CD44-223ENST00000526553 PBX4Q9BYU1 374 aa8.66□□□□□ -1.02
CD44-223ENST00000526553 RASSF4Q9H2L5 321 aa8.66□□□□□ -1.02
CD44-223ENST00000526553 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.66□□□□□ -1.02
CD44-223ENST00000526553 PRRT3Q5FWE3 981 aa8.65□□□□□ -1.02
CD44-223ENST00000526553 TRAPPC3LQ5T215 181 aa8.65□□□□□ -1.02
CD44-223ENST00000526553 SND1Q7KZF4 910 aaKnown RBP eCLIP8.65□□□□□ -1.02
CD44-223ENST00000526553 TMC7Q7Z402 723 aa8.65□□□□□ -1.02
CD44-223ENST00000526553 WFDC8Q8IUA0 241 aa8.65□□□□□ -1.02
CD44-223ENST00000526553 HOMEZQ8IX15 550 aa8.65□□□□□ -1.02
CD44-223ENST00000526553 TRIM33Q9UPN9 1127 aa8.65□□□□□ -1.02
CD44-223ENST00000526553 A0A0A0MRY4 1105 aa8.64□□□□□ -1.03
CD44-223ENST00000526553 BAG6P46379 1132 aa8.64□□□□□ -1.03
CD44-223ENST00000526553 CEP135Q66GS9 1140 aa8.64□□□□□ -1.03
CD44-223ENST00000526553 DTWD1Q8N5C7 304 aa8.64□□□□□ -1.03
CD44-223ENST00000526553 DZANK1Q9NVP4 752 aa8.64□□□□□ -1.03
CD44-223ENST00000526553 CPNE3O75131 537 aaKnown RBP8.63□□□□□ -1.03
CD44-223ENST00000526553 ACPPP15309 386 aa8.63□□□□□ -1.03
CD44-223ENST00000526553 RAC1P63000 192 aa8.63□□□□□ -1.03
CD44-223ENST00000526553 TRIM28Q13263 835 aaKnown RBP8.63□□□□□ -1.03
CD44-223ENST00000526553 ORC1Q13415 861 aa8.63□□□□□ -1.03
CD44-223ENST00000526553 GDF6Q6KF10 455 aaPredicted RBP8.63□□□□□ -1.03
CD44-223ENST00000526553 DMRTC2Q8IXT2 367 aaPredicted RBP8.63□□□□□ -1.03
CD44-223ENST00000526553 DNAJC25Q9H1X3 360 aa8.63□□□□□ -1.03
CD44-223ENST00000526553 NFKBIEO00221 500 aa8.62□□□□□ -1.03
CD44-223ENST00000526553 ZSCAN29Q8IWY8 852 aaPredicted RBP8.62□□□□□ -1.03
CD44-223ENST00000526553 GALNT12Q8IXK2 581 aa8.62□□□□□ -1.03
CD44-223ENST00000526553 TMEM102Q8N9M5 508 aaPredicted RBP8.62□□□□□ -1.03
CD44-223ENST00000526553 ASB16Q96NS5 453 aa8.62□□□□□ -1.03
CD44-223ENST00000526553 NIF3L1Q9GZT8 377 aa8.62□□□□□ -1.03
CD44-223ENST00000526553 MUC3BQ9H195 1237 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms