RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 GOLIM4O00461 696 aa25.13■■□□□ 1.61
VPS28-205ENST00000526204 KDM4AO75164 1064 aa25.13■■□□□ 1.61
VPS28-205ENST00000526204 LLPHQ9BRT6 129 aaKnown RBP25.13■■□□□ 1.61
VPS28-205ENST00000526204 CARD10Q9BWT7 1032 aa25.13■■□□□ 1.61
VPS28-205ENST00000526204 UBR2Q8IWV8 1755 aa25.13■■□□□ 1.61
VPS28-205ENST00000526204 ZBTB3Q9H5J0 574 aa25.13■■□□□ 1.61
VPS28-205ENST00000526204 GOLGA6L4A6NEF3 574 aa25.12■■□□□ 1.61
VPS28-205ENST00000526204 ADCY5O95622 1261 aa25.12■■□□□ 1.61
VPS28-205ENST00000526204 HSP90B1P14625 803 aaKnown RBP25.12■■□□□ 1.61
VPS28-205ENST00000526204 TIMM10P62072 90 aa25.12■■□□□ 1.61
VPS28-205ENST00000526204 ZMYM1Q5SVZ6 1142 aa25.12■■□□□ 1.61
VPS28-205ENST00000526204 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.12■■□□□ 1.61
VPS28-205ENST00000526204 SPATA32Q96LK8 384 aa25.12■■□□□ 1.61
VPS28-205ENST00000526204 COL5A2P05997 1499 aaPredicted RBP25.12■■□□□ 1.61
VPS28-205ENST00000526204 FGD1P98174 961 aa25.12■■□□□ 1.61
VPS28-205ENST00000526204 DHX32Q7L7V1 743 aaKnown RBP25.12■■□□□ 1.61
VPS28-205ENST00000526204 NUP188Q5SRE5 1749 aa25.11■■□□□ 1.61
VPS28-205ENST00000526204 CHGBP05060 677 aa25.11■■□□□ 1.61
VPS28-205ENST00000526204 NUP62CLQ9H1M0 184 aa25.11■■□□□ 1.61
VPS28-205ENST00000526204 ZSCAN16Q9H4T2 348 aaPredicted RBP25.11■■□□□ 1.61
VPS28-205ENST00000526204 TNS2Q63HR2 1409 aa25.11■■□□□ 1.61
VPS28-205ENST00000526204 FBXO3Q9UK99 471 aa25.1■■□□□ 1.61
VPS28-205ENST00000526204 IFIT1P09914 478 aaKnown RBP25.1■■□□□ 1.61
VPS28-205ENST00000526204 KIAA2012Q0VF49 1180 aa25.1■■□□□ 1.61
VPS28-205ENST00000526204 MAP3K11Q16584 847 aa25.1■■□□□ 1.61
VPS28-205ENST00000526204 FAM173BQ6P4H8 233 aa25.1■■□□□ 1.61
VPS28-205ENST00000526204 BRF1Q92994 677 aa25.1■■□□□ 1.61
VPS28-205ENST00000526204 CCDC9Q9Y3X0 531 aaKnown RBP25.1■■□□□ 1.61
VPS28-205ENST00000526204 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP25.1■■□□□ 1.61
VPS28-205ENST00000526204 PFKFB2O60825 505 aa25.09■■□□□ 1.61
VPS28-205ENST00000526204 LRRFIP1Q32MZ4 808 aaKnown RBP25.09■■□□□ 1.61
VPS28-205ENST00000526204 LRRC24Q50LG9 513 aa25.09■■□□□ 1.61
VPS28-205ENST00000526204 LEO1Q8WVC0 666 aaPredicted RBP25.09■■□□□ 1.61
VPS28-205ENST00000526204 PAPPAQ13219 1627 aa25.09■■□□□ 1.61
VPS28-205ENST00000526204 SOS2Q07890 1332 aaPredicted RBP25.09■■□□□ 1.61
VPS28-205ENST00000526204 A0A1B0GUL7 405 aa25.09■■□□□ 1.61
VPS28-205ENST00000526204 JAK2O60674 1132 aa25.09■■□□□ 1.61
VPS28-205ENST00000526204 ISCA1Q9BUE6 129 aa25.09■■□□□ 1.61
VPS28-205ENST00000526204 DDX19AQ9NUU7 478 aaKnown RBP25.09■■□□□ 1.61
VPS28-205ENST00000526204 CEP126Q9P2H0 1117 aa25.09■■□□□ 1.61
VPS28-205ENST00000526204 H3BQV1 296 aa25.08■■□□□ 1.61
VPS28-205ENST00000526204 RNF113AO15541 343 aaKnown RBP25.08■■□□□ 1.61
VPS28-205ENST00000526204 IFFO2Q5TF58 517 aa25.08■■□□□ 1.61
VPS28-205ENST00000526204 SMARCC2Q8TAQ2 1214 aa25.08■■□□□ 1.61
VPS28-205ENST00000526204 CHMP4CQ96CF2 233 aa25.08■■□□□ 1.61
VPS28-205ENST00000526204 KIF3AQ9Y496 699 aa25.08■■□□□ 1.61
VPS28-205ENST00000526204 TJP1Q07157 1748 aa25.08■■□□□ 1.61
VPS28-205ENST00000526204 TRIM28Q13263 835 aaKnown RBP25.07■■□□□ 1.6
VPS28-205ENST00000526204 STOX1Q6ZVD7 989 aa25.07■■□□□ 1.6
VPS28-205ENST00000526204 AGXT2Q9BYV1 514 aa25.07■■□□□ 1.6
VPS28-205ENST00000526204 TFIP11Q9UBB9 837 aaKnown RBP25.07■■□□□ 1.6
VPS28-205ENST00000526204 LIG1P18858 919 aa25.07■■□□□ 1.6
VPS28-205ENST00000526204 SCRN1Q12765 414 aa25.07■■□□□ 1.6
VPS28-205ENST00000526204 RESTQ13127 1097 aa25.07■■□□□ 1.6
VPS28-205ENST00000526204 TCIRG1Q13488 830 aa25.07■■□□□ 1.6
VPS28-205ENST00000526204 CCDC57Q2TAC2 916 aa25.07■■□□□ 1.6
VPS28-205ENST00000526204 CFAP45Q9UL16 551 aa25.07■■□□□ 1.6
VPS28-205ENST00000526204 AKAP2Q9Y2D5 859 aa25.07■■□□□ 1.6
VPS28-205ENST00000526204 HSPD1P10809 573 aaKnown RBP25.06■■□□□ 1.6
VPS28-205ENST00000526204 HMGN5P82970 282 aaKnown RBP25.06■■□□□ 1.6
VPS28-205ENST00000526204 EXOSC10Q01780 885 aaKnown RBP25.06■■□□□ 1.6
VPS28-205ENST00000526204 ZNF594Q96JF6 807 aaPredicted RBP25.06■■□□□ 1.6
VPS28-205ENST00000526204 STRCQ7RTU9 1775 aa25.06■■□□□ 1.6
VPS28-205ENST00000526204 TEX13AQ9BXU3 409 aaPredicted RBP25.06■■□□□ 1.6
VPS28-205ENST00000526204 R3HCC1Q9Y3T6 440 aaKnown RBP25.06■■□□□ 1.6
VPS28-205ENST00000526204 SPEF2Q9C093 1822 aa25.05■■□□□ 1.6
VPS28-205ENST00000526204 CCDC158Q5M9N0 1113 aa25.05■■□□□ 1.6
VPS28-205ENST00000526204 TNMDQ9H2S6 317 aa25.05■■□□□ 1.6
VPS28-205ENST00000526204 DACT1Q9NYF0 836 aa25.05■■□□□ 1.6
VPS28-205ENST00000526204 RRP9O43818 475 aaKnown RBP25.04■■□□□ 1.6
VPS28-205ENST00000526204 NAA16Q6N069 864 aaPredicted RBP25.04■■□□□ 1.6
VPS28-205ENST00000526204 FAM200AQ8TCP9 573 aa25.04■■□□□ 1.6
VPS28-205ENST00000526204 MAST3O60307 1309 aa25.03■■□□□ 1.6
VPS28-205ENST00000526204 E7EWF7 191 aa25.03■■□□□ 1.6
VPS28-205ENST00000526204 LRRC2Q9BYS8 371 aa25.03■■□□□ 1.6
VPS28-205ENST00000526204 TMOD3Q9NYL9 352 aa25.03■■□□□ 1.6
VPS28-205ENST00000526204 TPM3P06753 285 aa25.03■■□□□ 1.6
VPS28-205ENST00000526204 ZFYP08048 801 aaPredicted RBP25.03■■□□□ 1.6
VPS28-205ENST00000526204 TYRO3Q06418 890 aa25.03■■□□□ 1.6
VPS28-205ENST00000526204 RBM43Q6ZSC3 357 aaKnown RBP25.03■■□□□ 1.6
VPS28-205ENST00000526204 VSIG10Q8N0Z9 540 aa25.03■■□□□ 1.6
VPS28-205ENST00000526204 NSUN7Q8NE18 718 aaKnown RBP25.03■■□□□ 1.6
VPS28-205ENST00000526204 DDX11Q96FC9 970 aa25.03■■□□□ 1.6
VPS28-205ENST00000526204 PUS3Q9BZE2 481 aaKnown RBP25.03■■□□□ 1.6
VPS28-205ENST00000526204 SLAIN2Q9P270 581 aa25.03■■□□□ 1.6
VPS28-205ENST00000526204 PLA2G12BQ9BX93 195 aa25.02■■□□□ 1.6
VPS28-205ENST00000526204 CLSTN2Q9H4D0 955 aa25.02■■□□□ 1.6
VPS28-205ENST00000526204 PCCAP05165 728 aaPredicted RBP25.01■■□□□ 1.59
VPS28-205ENST00000526204 EVA1CP58658 441 aa25.01■■□□□ 1.59
VPS28-205ENST00000526204 GORABQ5T7V8 394 aa25.01■■□□□ 1.59
VPS28-205ENST00000526204 FBXL16Q8N461 479 aa25.01■■□□□ 1.59
VPS28-205ENST00000526204 ZNF274Q96GC6 653 aaPredicted RBP25.01■■□□□ 1.59
VPS28-205ENST00000526204 CTNNA3Q9UI47 895 aa25.01■■□□□ 1.59
VPS28-205ENST00000526204 CAMK4Q16566 473 aa25.01■■□□□ 1.59
VPS28-205ENST00000526204 TTC39AQ5SRH9 613 aa25.01■■□□□ 1.59
VPS28-205ENST00000526204 KIF6Q6ZMV9 814 aa25.01■■□□□ 1.59
VPS28-205ENST00000526204 PIBF1Q8WXW3 757 aa25.01■■□□□ 1.59
VPS28-205ENST00000526204 APOBRQ0VD83 1088 aa25■■□□□ 1.59
VPS28-205ENST00000526204 SLFNL1Q499Z3 407 aa25■■□□□ 1.59
VPS28-205ENST00000526204 ATL3Q6DD88 541 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms