RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 GADD45BO75293 160 aaPredicted RBP7.32□□□□□ -1.24
CD44-220ENST00000525688 NFKB1P19838 968 aa7.32□□□□□ -1.24
CD44-220ENST00000525688 PTPN12Q05209 780 aaKnown RBP7.32□□□□□ -1.24
CD44-220ENST00000525688 GRIN2CQ14957 1233 aa7.32□□□□□ -1.24
CD44-220ENST00000525688 NXPE4Q6UWF7 544 aa7.32□□□□□ -1.24
CD44-220ENST00000525688 GTPBP3Q969Y2 492 aaKnown RBP7.32□□□□□ -1.24
CD44-220ENST00000525688 TRAK1Q9UPV9 953 aa7.32□□□□□ -1.24
CD44-220ENST00000525688 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.32□□□□□ -1.24
CD44-220ENST00000525688 A0A1W2PP55 124 aa7.31□□□□□ -1.24
CD44-220ENST00000525688 PSAPP07602 524 aa7.31□□□□□ -1.24
CD44-220ENST00000525688 CD33P20138 364 aa7.31□□□□□ -1.24
CD44-220ENST00000525688 FGFR3P22607 806 aa7.31□□□□□ -1.24
CD44-220ENST00000525688 PLAURQ03405 335 aa7.31□□□□□ -1.24
CD44-220ENST00000525688 TAF1CQ15572 869 aaPredicted RBP7.31□□□□□ -1.24
CD44-220ENST00000525688 C9orf131Q5VYM1 1079 aa7.31□□□□□ -1.24
CD44-220ENST00000525688 PRPF40BQ6NWY9 871 aaKnown RBP7.31□□□□□ -1.24
CD44-220ENST00000525688 GLIS3Q8NEA6 775 aa7.31□□□□□ -1.24
CD44-220ENST00000525688 ANKRD24Q8TF21 1146 aa7.31□□□□□ -1.24
CD44-220ENST00000525688 NANOS1Q8WY41 292 aaKnown RBP7.31□□□□□ -1.24
CD44-220ENST00000525688 TGIF2Q9GZN2 237 aa7.31□□□□□ -1.24
CD44-220ENST00000525688 PPP4R2Q9NY27 417 aa7.31□□□□□ -1.24
CD44-220ENST00000525688 KANSL3Q9P2N6 904 aa7.31□□□□□ -1.24
CD44-220ENST00000525688 PPFIA3O75145 1194 aa7.3□□□□□ -1.24
CD44-220ENST00000525688 USP17L7P0C7H9 530 aa7.3□□□□□ -1.24
CD44-220ENST00000525688 SNRPBP14678 240 aaKnown RBP7.3□□□□□ -1.24
CD44-220ENST00000525688 NRLP54845 237 aa7.3□□□□□ -1.24
CD44-220ENST00000525688 HYAL2Q12891 473 aa7.3□□□□□ -1.24
CD44-220ENST00000525688 NEUROD1Q13562 356 aa7.3□□□□□ -1.24
CD44-220ENST00000525688 FOXR1Q6PIV2 292 aa7.3□□□□□ -1.24
CD44-220ENST00000525688 BHMTQ93088 406 aa7.3□□□□□ -1.24
CD44-220ENST00000525688 EHD4Q9H223 541 aa7.3□□□□□ -1.24
CD44-220ENST00000525688 SHROOM4Q9ULL8 1493 aa7.3□□□□□ -1.24
CD44-220ENST00000525688 XRCC5P13010 732 aaKnown RBP7.29□□□□□ -1.24
CD44-220ENST00000525688 GSTT1P30711 240 aa7.29□□□□□ -1.24
CD44-220ENST00000525688 COL13A1Q5TAT6 717 aaPredicted RBP7.29□□□□□ -1.24
CD44-220ENST00000525688 DHX32Q7L7V1 743 aaKnown RBP7.29□□□□□ -1.24
CD44-220ENST00000525688 CEP120Q8N960 986 aa7.29□□□□□ -1.24
CD44-220ENST00000525688 C3orf58Q8NDZ4 430 aa7.29□□□□□ -1.24
CD44-220ENST00000525688 TRPM4Q8TD43 1214 aa7.29□□□□□ -1.24
CD44-220ENST00000525688 TRERF1Q96PN7 1200 aa7.29□□□□□ -1.24
CD44-220ENST00000525688 LATS2Q9NRM7 1088 aa7.29□□□□□ -1.24
CD44-220ENST00000525688 GPLD1P80108 840 aa7.28□□□□□ -1.24
CD44-220ENST00000525688 NAALADL2Q58DX5 795 aa7.28□□□□□ -1.24
CD44-220ENST00000525688 MEI1Q5TIA1 1274 aa7.28□□□□□ -1.24
CD44-220ENST00000525688 NCAPG2Q86XI2 1143 aa7.28□□□□□ -1.24
CD44-220ENST00000525688 CCNJLQ8IV13 435 aa7.28□□□□□ -1.24
CD44-220ENST00000525688 CNTNAP3BQ96NU0 1288 aa7.28□□□□□ -1.24
CD44-220ENST00000525688 TCF12Q99081 682 aa7.28□□□□□ -1.24
CD44-220ENST00000525688 CNTNAP3Q9BZ76 1288 aa7.28□□□□□ -1.24
CD44-220ENST00000525688 TMEM238LA0A1B0GVL6 79 aa7.27□□□□□ -1.25
CD44-220ENST00000525688 CTBSQ01459 385 aa7.27□□□□□ -1.25
CD44-220ENST00000525688 SV2AQ7L0J3 742 aa7.27□□□□□ -1.25
CD44-220ENST00000525688 HS2ST1Q7LGA3 356 aa7.27□□□□□ -1.25
CD44-220ENST00000525688 OSMRQ99650 979 aa7.27□□□□□ -1.25
CD44-220ENST00000525688 NOC4LQ9BVI4 516 aaKnown RBP7.27□□□□□ -1.25
CD44-220ENST00000525688 LIN7BQ9HAP6 207 aa7.27□□□□□ -1.25
CD44-220ENST00000525688 ZFYVE1Q9HBF4 777 aa7.27□□□□□ -1.25
CD44-220ENST00000525688 ABCB6Q9NP58 842 aa7.27□□□□□ -1.25
CD44-220ENST00000525688 AVENQ9NQS1 362 aaPredicted RBP7.27□□□□□ -1.25
CD44-220ENST00000525688 DZANK1Q9NVP4 752 aa7.27□□□□□ -1.25
CD44-220ENST00000525688 DDX41Q9UJV9 622 aaKnown RBP7.27□□□□□ -1.25
CD44-220ENST00000525688 PPM1HQ9ULR3 514 aa7.27□□□□□ -1.25
CD44-220ENST00000525688 ABCC9O60706 1549 aa7.27□□□□□ -1.25
CD44-220ENST00000525688 C11orf95C9JLR9 678 aaPredicted RBP7.26□□□□□ -1.25
CD44-220ENST00000525688 PCSK7Q16549 785 aa7.26□□□□□ -1.25
CD44-220ENST00000525688 ZNF468Q5VIY5 522 aaPredicted RBP7.26□□□□□ -1.25
CD44-220ENST00000525688 RAB44Q7Z6P3 723 aaPredicted RBP7.26□□□□□ -1.25
CD44-220ENST00000525688 SLC43A3Q8NBI5 491 aa7.26□□□□□ -1.25
CD44-220ENST00000525688 SREK1Q8WXA9 508 aaKnown RBP7.26□□□□□ -1.25
CD44-220ENST00000525688 ZKSCAN3Q9BRR0 538 aa7.26□□□□□ -1.25
CD44-220ENST00000525688 SRA1Q9HD15 236 aaKnown RBP7.26□□□□□ -1.25
CD44-220ENST00000525688 LOC102724428A0A0B4J2F2 783 aa7.25□□□□□ -1.25
CD44-220ENST00000525688 ZBTB42B2RXF5 422 aa7.25□□□□□ -1.25
CD44-220ENST00000525688 NFKBIEO00221 500 aa7.25□□□□□ -1.25
CD44-220ENST00000525688 SIN3BO75182 1162 aa7.25□□□□□ -1.25
CD44-220ENST00000525688 SIK1P57059 783 aa7.25□□□□□ -1.25
CD44-220ENST00000525688 ERMP1Q7Z2K6 904 aa7.25□□□□□ -1.25
CD44-220ENST00000525688 VWA5B2Q8N398 1253 aa7.25□□□□□ -1.25
CD44-220ENST00000525688 TMEM102Q8N9M5 508 aaPredicted RBP7.25□□□□□ -1.25
CD44-220ENST00000525688 NSUN5Q96P11 429 aaKnown RBP7.25□□□□□ -1.25
CD44-220ENST00000525688 TINF2Q9BSI4 451 aa7.25□□□□□ -1.25
CD44-220ENST00000525688 BHLHE41Q9C0J9 482 aaPredicted RBP7.25□□□□□ -1.25
CD44-220ENST00000525688 CCSER2Q9H7U1 834 aa7.25□□□□□ -1.25
CD44-220ENST00000525688 USP35Q9P2H5 1018 aa7.25□□□□□ -1.25
CD44-220ENST00000525688 GGT7Q9UJ14 662 aa7.25□□□□□ -1.25
CD44-220ENST00000525688 PRR12Q9ULL5 1215 aa7.25□□□□□ -1.25
CD44-220ENST00000525688 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.25□□□□□ -1.25
CD44-220ENST00000525688 CDC14CA4D256 554 aa7.24□□□□□ -1.25
CD44-220ENST00000525688 GPR25O00155 361 aa7.24□□□□□ -1.25
CD44-220ENST00000525688 C2CD2LO14523 706 aa7.24□□□□□ -1.25
CD44-220ENST00000525688 LCE2BO14633 110 aa7.24□□□□□ -1.25
CD44-220ENST00000525688 ITPKAP23677 461 aa7.24□□□□□ -1.25
CD44-220ENST00000525688 FCGRTP55899 365 aa7.24□□□□□ -1.25
CD44-220ENST00000525688 RACK1P63244 317 aaKnown RBP7.24□□□□□ -1.25
CD44-220ENST00000525688 SYT9Q86SS6 491 aa7.24□□□□□ -1.25
CD44-220ENST00000525688 USP48Q86UV5 1035 aa7.24□□□□□ -1.25
CD44-220ENST00000525688 ZNF654Q8IZM8 581 aa7.24□□□□□ -1.25
CD44-220ENST00000525688 TNFRSF25Q93038 417 aa7.24□□□□□ -1.25
CD44-220ENST00000525688 NXPE3Q969Y0 559 aa7.24□□□□□ -1.25
CD44-220ENST00000525688 SPACA7Q96KW9 195 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms