RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.68	□□□□□ -1.66
CD44-216	ENST00000525293	FURIN	P09958	794 aa		4.68	□□□□□ -1.66
CD44-216	ENST00000525293	EIF1AX	P47813	144 aa	Known RBP	4.68	□□□□□ -1.66
CD44-216	ENST00000525293	AAMP	Q13685	434 aa		4.68	□□□□□ -1.66
CD44-216	ENST00000525293	DOC2B	Q14184	412 aa		4.68	□□□□□ -1.66
CD44-216	ENST00000525293	COL13A1	Q5TAT6	717 aa	Predicted RBP	4.68	□□□□□ -1.66
CD44-216	ENST00000525293	GDF6	Q6KF10	455 aa	Predicted RBP	4.68	□□□□□ -1.66
CD44-216	ENST00000525293	ILDR2	Q71H61	639 aa		4.68	□□□□□ -1.66
CD44-216	ENST00000525293	WFDC8	Q8IUA0	241 aa		4.68	□□□□□ -1.66
CD44-216	ENST00000525293	OR13H1	Q8NG92	308 aa		4.68	□□□□□ -1.66
CD44-216	ENST00000525293	NACC1	Q96RE7	527 aa		4.68	□□□□□ -1.66
CD44-216	ENST00000525293	RBSN	Q9H1K0	784 aa		4.68	□□□□□ -1.66
CD44-216	ENST00000525293	GGNBP2	Q9H3C7	697 aa		4.68	□□□□□ -1.66
CD44-216	ENST00000525293	ELP3	Q9H9T3	547 aa		4.68	□□□□□ -1.66
CD44-216	ENST00000525293	ABI2	Q9NYB9	513 aa	Predicted RBP	4.68	□□□□□ -1.66
CD44-216	ENST00000525293	MTMR7	Q9Y216	660 aa		4.68	□□□□□ -1.66
CD44-216	ENST00000525293		A6NHS1	94 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	C9orf172	C9J069	976 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	ABL1	P00519	1130 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	CYP2E1	P05181	493 aa	Predicted RBP	4.67	□□□□□ -1.66
CD44-216	ENST00000525293	HOXD8	P13378	290 aa	Predicted RBP	4.67	□□□□□ -1.66
CD44-216	ENST00000525293	ELN	P15502	786 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	SELP	P16109	830 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	HYAL2	Q12891	473 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	C8orf34	Q49A92	452 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	SHISA2	Q6UWI4	295 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	ZNF438	Q7Z4V0	828 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	FMR1NB	Q8N0W7	255 aa	Predicted RBP	4.67	□□□□□ -1.66
CD44-216	ENST00000525293	TTC16	Q8NEE8	873 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	SPACA7	Q96KW9	195 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	KRTAP9-2	Q9BYQ4	174 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	ANO2	Q9NQ90	1003 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	TMEM63C	Q9P1W3	806 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	UST	Q9Y2C2	406 aa		4.67	□□□□□ -1.66
CD44-216	ENST00000525293	FAM13A	O94988	1023 aa		4.66	□□□□□ -1.66
CD44-216	ENST00000525293	PDGFA	P04085	211 aa		4.66	□□□□□ -1.66
CD44-216	ENST00000525293	RPLP1	P05386	114 aa	Known RBP	4.66	□□□□□ -1.66
CD44-216	ENST00000525293	PCSK2	P16519	638 aa		4.66	□□□□□ -1.66
CD44-216	ENST00000525293	MZF1	P28698	734 aa	Predicted RBP	4.66	□□□□□ -1.66
CD44-216	ENST00000525293	FKBP4	Q02790	459 aa	Known RBP eCLIP	4.66	□□□□□ -1.66
CD44-216	ENST00000525293	ZNF211	Q13398	564 aa	Predicted RBP	4.66	□□□□□ -1.66
CD44-216	ENST00000525293	PDE12	Q6L8Q7	609 aa	Known RBP	4.66	□□□□□ -1.66
CD44-216	ENST00000525293	ALKBH2	Q6NS38	261 aa		4.66	□□□□□ -1.66
CD44-216	ENST00000525293	IL22RA1	Q8N6P7	574 aa		4.66	□□□□□ -1.66
CD44-216	ENST00000525293	LENG1	Q96BZ8	264 aa	Predicted RBP	4.66	□□□□□ -1.66
CD44-216	ENST00000525293	CNTN3	Q9P232	1028 aa		4.66	□□□□□ -1.66
CD44-216	ENST00000525293	POLI	Q9UNA4	740 aa		4.66	□□□□□ -1.66
CD44-216	ENST00000525293	TRIM33	Q9UPN9	1127 aa		4.66	□□□□□ -1.66
CD44-216	ENST00000525293		K7ELQ4	463 aa	Predicted RBP	4.65	□□□□□ -1.67
CD44-216	ENST00000525293	NPR3	P17342	541 aa		4.65	□□□□□ -1.67
CD44-216	ENST00000525293	ATP11A	P98196	1134 aa		4.65	□□□□□ -1.67
CD44-216	ENST00000525293	SF3B2	Q13435	895 aa	Known RBP	4.65	□□□□□ -1.67
CD44-216	ENST00000525293	CEP135	Q66GS9	1140 aa		4.65	□□□□□ -1.67
CD44-216	ENST00000525293	XKR5	Q6UX68	686 aa		4.65	□□□□□ -1.67
CD44-216	ENST00000525293	NCAPG2	Q86XI2	1143 aa		4.65	□□□□□ -1.67
CD44-216	ENST00000525293	FBXO11	Q86XK2	927 aa		4.65	□□□□□ -1.67
CD44-216	ENST00000525293	DTWD1	Q8N5C7	304 aa		4.65	□□□□□ -1.67
CD44-216	ENST00000525293	C1orf127	Q8N9H9	656 aa		4.65	□□□□□ -1.67
CD44-216	ENST00000525293	KANSL3	Q9P2N6	904 aa		4.65	□□□□□ -1.67
CD44-216	ENST00000525293	USP21	Q9UK80	565 aa		4.65	□□□□□ -1.67
CD44-216	ENST00000525293	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	4.65	□□□□□ -1.67
CD44-216	ENST00000525293	KRTAP9-6	A0A140TA67	174 aa		4.64	□□□□□ -1.67
CD44-216	ENST00000525293	DEAF1	O75398	565 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-216	ENST00000525293	KIF4A	O95239	1232 aa		4.64	□□□□□ -1.67
CD44-216	ENST00000525293	NRG1	Q02297	640 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-216	ENST00000525293	ADGRE1	Q14246	886 aa		4.64	□□□□□ -1.67
CD44-216	ENST00000525293	MBTPS1	Q14703	1052 aa		4.64	□□□□□ -1.67
CD44-216	ENST00000525293	B4GALNT3	Q6L9W6	998 aa		4.64	□□□□□ -1.67
CD44-216	ENST00000525293	RETREG2	Q8NC44	543 aa		4.64	□□□□□ -1.67
CD44-216	ENST00000525293	LACRT	Q9GZZ8	138 aa		4.64	□□□□□ -1.67
CD44-216	ENST00000525293	RASSF4	Q9H2L5	321 aa		4.64	□□□□□ -1.67
CD44-216	ENST00000525293	TPSG1	Q9NRR2	321 aa		4.64	□□□□□ -1.67
CD44-216	ENST00000525293	FZD6	O60353	706 aa		4.63	□□□□□ -1.67
CD44-216	ENST00000525293	SMNDC1	O75940	238 aa	Known RBP eCLIP	4.63	□□□□□ -1.67
CD44-216	ENST00000525293	CES1	P23141	567 aa		4.63	□□□□□ -1.67
CD44-216	ENST00000525293	SERPINB4	P48594	390 aa		4.63	□□□□□ -1.67
CD44-216	ENST00000525293	IGF2-AS	Q6U949	168 aa		4.63	□□□□□ -1.67
CD44-216	ENST00000525293	TXNRD3	Q86VQ6	643 aa		4.63	□□□□□ -1.67
CD44-216	ENST00000525293	CEP120	Q8N960	986 aa		4.63	□□□□□ -1.67
CD44-216	ENST00000525293	PSMG3-AS1	Q96PY0	264 aa		4.63	□□□□□ -1.67
CD44-216	ENST00000525293	SEMA6B	Q9H3T3	888 aa		4.63	□□□□□ -1.67
CD44-216	ENST00000525293	CCDC87	Q9NVE4	849 aa		4.63	□□□□□ -1.67
CD44-216	ENST00000525293	SALL4	Q9UJQ4	1053 aa		4.63	□□□□□ -1.67
CD44-216	ENST00000525293	LINC01387	J3KSC0	135 aa		4.62	□□□□□ -1.67
CD44-216	ENST00000525293	DLL1	O00548	723 aa		4.62	□□□□□ -1.67
CD44-216	ENST00000525293	ICMT	O60725	284 aa		4.62	□□□□□ -1.67
CD44-216	ENST00000525293	ACPP	P15309	386 aa		4.62	□□□□□ -1.67
CD44-216	ENST00000525293	CDC25B	P30305	580 aa		4.62	□□□□□ -1.67
CD44-216	ENST00000525293	SETDB1	Q15047	1291 aa		4.62	□□□□□ -1.67
CD44-216	ENST00000525293	TXNDC11	Q6PKC3	985 aa		4.62	□□□□□ -1.67
CD44-216	ENST00000525293	ADAMTSL4	Q6UY14	1074 aa		4.62	□□□□□ -1.67
CD44-216	ENST00000525293	POP1	Q99575	1024 aa	Known RBP	4.62	□□□□□ -1.67
CD44-216	ENST00000525293	PBX4	Q9BYU1	374 aa		4.62	□□□□□ -1.67
CD44-216	ENST00000525293	CHRD	Q9H2X0	955 aa		4.62	□□□□□ -1.67
CD44-216	ENST00000525293	PPME1	Q9Y570	386 aa		4.62	□□□□□ -1.67
CD44-216	ENST00000525293		H3BRB1	525 aa		4.61	□□□□□ -1.67
CD44-216	ENST00000525293	EREG	O14944	169 aa		4.61	□□□□□ -1.67
CD44-216	ENST00000525293	TNFRSF21	O75509	655 aa		4.61	□□□□□ -1.67
CD44-216	ENST00000525293	TRPA1	O75762	1119 aa		4.61	□□□□□ -1.67
CD44-216	ENST00000525293	CDC27	P30260	824 aa		4.61	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms