RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 ANKRD2Q9GZV1 360 aa20.59■□□□□ 0.89
LSM1-205ENST00000523511 CCDC88AQ3V6T2 1871 aa20.58■□□□□ 0.89
LSM1-205ENST00000523511 SMC4Q9NTJ3 1288 aa20.58■□□□□ 0.89
LSM1-205ENST00000523511 CASP7P55210 303 aa20.57■□□□□ 0.88
LSM1-205ENST00000523511 CCDC57Q2TAC2 916 aa20.57■□□□□ 0.88
LSM1-205ENST00000523511 USP50Q70EL3 339 aaPredicted RBP20.57■□□□□ 0.88
LSM1-205ENST00000523511 SLC51AQ86UW1 340 aa20.57■□□□□ 0.88
LSM1-205ENST00000523511 CHMP3Q9Y3E7 222 aa20.57■□□□□ 0.88
LSM1-205ENST00000523511 DDX60Q8IY21 1712 aaKnown RBP20.56■□□□□ 0.88
LSM1-205ENST00000523511 RAD17O75943 681 aa20.56■□□□□ 0.88
LSM1-205ENST00000523511 TAF7LQ5H9L4 462 aa20.56■□□□□ 0.88
LSM1-205ENST00000523511 MINPP1Q9UNW1 487 aa20.56■□□□□ 0.88
LSM1-205ENST00000523511 LEMD3Q9Y2U8 911 aa20.56■□□□□ 0.88
LSM1-205ENST00000523511 H7C1D1 291 aa20.55■□□□□ 0.88
LSM1-205ENST00000523511 ADARB2Q9NS39 739 aaKnown RBP20.55■□□□□ 0.88
LSM1-205ENST00000523511 HDAC5Q9UQL6 1122 aa20.55■□□□□ 0.88
LSM1-205ENST00000523511 ECE2O60344 883 aa20.54■□□□□ 0.88
LSM1-205ENST00000523511 DOK7Q18PE1 504 aa20.54■□□□□ 0.88
LSM1-205ENST00000523511 DBNDD1Q9H9R9 158 aa20.54■□□□□ 0.88
LSM1-205ENST00000523511 GPRC5DQ9NZD1 345 aa20.54■□□□□ 0.88
LSM1-205ENST00000523511 LAMB2P55268 1798 aa20.54■□□□□ 0.88
LSM1-205ENST00000523511 CACNA1FO60840 1977 aa20.54■□□□□ 0.88
LSM1-205ENST00000523511 RPS12P25398 132 aaKnown RBP20.53■□□□□ 0.88
LSM1-205ENST00000523511 EPS15P42566 896 aa20.53■□□□□ 0.88
LSM1-205ENST00000523511 KCNJ4P48050 445 aa20.53■□□□□ 0.88
LSM1-205ENST00000523511 GMPSP49915 693 aaPredicted RBP20.53■□□□□ 0.88
LSM1-205ENST00000523511 SCNN1DP51172 638 aa20.53■□□□□ 0.88
LSM1-205ENST00000523511 FOXO4P98177 505 aa20.53■□□□□ 0.88
LSM1-205ENST00000523511 HNRNPUQ00839 825 aaKnown RBP eCLIP20.53■□□□□ 0.88
LSM1-205ENST00000523511 FAM161AQ3B820 660 aa20.53■□□□□ 0.88
LSM1-205ENST00000523511 LMBR1LQ6UX01 489 aa20.53■□□□□ 0.88
LSM1-205ENST00000523511 PODNQ7Z5L7 613 aa20.53■□□□□ 0.88
LSM1-205ENST00000523511 DPF2Q92785 391 aa20.53■□□□□ 0.88
LSM1-205ENST00000523511 CCT4P50991 539 aaKnown RBP20.52■□□□□ 0.88
LSM1-205ENST00000523511 API5Q9BZZ5 524 aaKnown RBP20.52■□□□□ 0.88
LSM1-205ENST00000523511 BRPF1P55201 1214 aaPredicted RBP20.51■□□□□ 0.87
LSM1-205ENST00000523511 CNTROBQ8N137 903 aa20.51■□□□□ 0.87
LSM1-205ENST00000523511 CNOT7Q9UIV1 285 aaKnown RBP20.51■□□□□ 0.87
LSM1-205ENST00000523511 YDJCA8MPS7 323 aa20.5■□□□□ 0.87
LSM1-205ENST00000523511 IPO8O15397 1037 aaKnown RBP20.5■□□□□ 0.87
LSM1-205ENST00000523511 POTEIP0CG38 1075 aa20.5■□□□□ 0.87
LSM1-205ENST00000523511 POTEJP0CG39 1038 aa20.5■□□□□ 0.87
LSM1-205ENST00000523511 LDHAL6AQ6ZMR3 332 aa20.5■□□□□ 0.87
LSM1-205ENST00000523511 SCN4AP35499 1836 aa20.5■□□□□ 0.87
LSM1-205ENST00000523511 PSMD14O00487 310 aa20.49■□□□□ 0.87
LSM1-205ENST00000523511 ZC3H15Q8WU90 426 aaKnown RBP20.49■□□□□ 0.87
LSM1-205ENST00000523511 CNNM1Q9NRU3 951 aa20.49■□□□□ 0.87
LSM1-205ENST00000523511 NOB1Q9ULX3 412 aaKnown RBP20.49■□□□□ 0.87
LSM1-205ENST00000523511 ZNF804BA4D1E1 1349 aa20.49■□□□□ 0.87
LSM1-205ENST00000523511 UTYO14607 1347 aa20.49■□□□□ 0.87
LSM1-205ENST00000523511 ARHGAP45Q92619 1136 aa20.48■□□□□ 0.87
LSM1-205ENST00000523511 GPR101Q96P66 508 aaPredicted RBP20.48■□□□□ 0.87
LSM1-205ENST00000523511 COA1Q9GZY4 146 aa20.48■□□□□ 0.87
LSM1-205ENST00000523511 CREBZFQ9NS37 354 aa20.48■□□□□ 0.87
LSM1-205ENST00000523511 KIF16BQ96L93 1317 aa20.48■□□□□ 0.87
LSM1-205ENST00000523511 COL4A5P29400 1685 aa20.48■□□□□ 0.87
LSM1-205ENST00000523511 MED23Q9ULK4 1368 aa20.47■□□□□ 0.87
LSM1-205ENST00000523511 VIL1P09327 827 aaKnown RBP20.47■□□□□ 0.87
LSM1-205ENST00000523511 NBPF7P0C2Y1 421 aaPredicted RBP20.47■□□□□ 0.87
LSM1-205ENST00000523511 RARSP54136 660 aaKnown RBP20.47■□□□□ 0.87
LSM1-205ENST00000523511 CHRNDQ07001 517 aa20.47■□□□□ 0.87
LSM1-205ENST00000523511 MAP1SQ66K74 1059 aaPredicted RBP20.47■□□□□ 0.87
LSM1-205ENST00000523511 LRRC37AA6NMS7 1700 aa20.47■□□□□ 0.87
LSM1-205ENST00000523511 USP17L3A6NCW0 530 aa20.46■□□□□ 0.87
LSM1-205ENST00000523511 USP17L4A6NCW7 530 aa20.46■□□□□ 0.87
LSM1-205ENST00000523511 TMEM88BA6NKF7 163 aa20.46■□□□□ 0.87
LSM1-205ENST00000523511 ITGBL1O95965 494 aaPredicted RBP20.46■□□□□ 0.87
LSM1-205ENST00000523511 USP17L1Q7RTZ2 530 aa20.46■□□□□ 0.87
LSM1-205ENST00000523511 MICALL2Q8IY33 904 aa20.46■□□□□ 0.87
LSM1-205ENST00000523511 DNAJC5GQ8N7S2 189 aa20.46■□□□□ 0.87
LSM1-205ENST00000523511 AGBL3Q8NEM8 1001 aa20.46■□□□□ 0.87
LSM1-205ENST00000523511 KLRG1Q96E93 195 aa20.46■□□□□ 0.87
LSM1-205ENST00000523511 SUCLG2Q96I99 432 aa20.46■□□□□ 0.87
LSM1-205ENST00000523511 ZBTB12Q9Y330 459 aaPredicted RBP20.46■□□□□ 0.87
LSM1-205ENST00000523511 MMP14P50281 582 aa20.45■□□□□ 0.86
LSM1-205ENST00000523511 EPHA10Q5JZY3 1008 aa20.44■□□□□ 0.86
LSM1-205ENST00000523511 RSBN1LQ6PCB5 846 aaPredicted RBP20.44■□□□□ 0.86
LSM1-205ENST00000523511 USP44Q9H0E7 712 aa20.44■□□□□ 0.86
LSM1-205ENST00000523511 DUOX1Q9NRD9 1551 aa20.43■□□□□ 0.86
LSM1-205ENST00000523511 HTRA3P83110 453 aa20.43■□□□□ 0.86
LSM1-205ENST00000523511 OGFOD1Q8N543 542 aa20.43■□□□□ 0.86
LSM1-205ENST00000523511 BICC1Q9H694 974 aaKnown RBP20.43■□□□□ 0.86
LSM1-205ENST00000523511 KCNQ5Q9NR82 932 aa20.43■□□□□ 0.86
LSM1-205ENST00000523511 PASKQ96RG2 1323 aa20.43■□□□□ 0.86
LSM1-205ENST00000523511 TAF1P21675 1872 aa20.43■□□□□ 0.86
LSM1-205ENST00000523511 PLIN1O60240 522 aa20.42■□□□□ 0.86
LSM1-205ENST00000523511 UBTFL1P0CB47 393 aaPredicted RBP20.42■□□□□ 0.86
LSM1-205ENST00000523511 RABL6Q3YEC7 729 aaPredicted RBP20.42■□□□□ 0.86
LSM1-205ENST00000523511 STRIP1Q5VSL9 837 aa20.42■□□□□ 0.86
LSM1-205ENST00000523511 CDC37L1Q7L3B6 337 aa20.42■□□□□ 0.86
LSM1-205ENST00000523511 PGAP2Q9UHJ9 254 aa20.42■□□□□ 0.86
LSM1-205ENST00000523511 MYO3BQ8WXR4 1341 aa20.42■□□□□ 0.86
LSM1-205ENST00000523511 TAF5LO75529 589 aa20.41■□□□□ 0.86
LSM1-205ENST00000523511 USP17L8P0C7I0 530 aa20.41■□□□□ 0.86
LSM1-205ENST00000523511 ZNF804AQ7Z570 1209 aa20.41■□□□□ 0.86
LSM1-205ENST00000523511 FBXW7Q969H0 707 aa20.41■□□□□ 0.86
LSM1-205ENST00000523511 ZNF594Q96JF6 807 aaPredicted RBP20.41■□□□□ 0.86
LSM1-205ENST00000523511 MROH5Q6ZUA9 1318 aa20.41■□□□□ 0.86
LSM1-205ENST00000523511 RBM26Q5T8P6 1007 aaKnown RBP20.4■□□□□ 0.86
LSM1-205ENST00000523511 TTLL5Q6EMB2 1281 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms