RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 ECE2O60344 883 aa22.34■■□□□ 1.17
DDX41-217ENST00000515562 UFL1O94874 794 aa22.34■■□□□ 1.17
DDX41-217ENST00000515562 ZC3H12CQ9C0D7 883 aaKnown RBP22.34■■□□□ 1.17
DDX41-217ENST00000515562 UBE3BQ7Z3V4 1068 aa22.33■■□□□ 1.17
DDX41-217ENST00000515562 TTLL11Q8NHH1 800 aa22.33■■□□□ 1.17
DDX41-217ENST00000515562 DNAAF4Q8WXU2 420 aa22.33■■□□□ 1.17
DDX41-217ENST00000515562 XDHP47989 1333 aa22.32■■□□□ 1.16
DDX41-217ENST00000515562 TRPM7Q96QT4 1865 aa22.32■■□□□ 1.16
DDX41-217ENST00000515562 H7C1W4 665 aa22.32■■□□□ 1.16
DDX41-217ENST00000515562 PSMD14O00487 310 aa22.32■■□□□ 1.16
DDX41-217ENST00000515562 RPS12P25398 132 aaKnown RBP22.32■■□□□ 1.16
DDX41-217ENST00000515562 GCKRQ14397 625 aa22.32■■□□□ 1.16
DDX41-217ENST00000515562 LINS1Q8NG48 757 aa22.32■■□□□ 1.16
DDX41-217ENST00000515562 ZC3H15Q8WU90 426 aaKnown RBP22.32■■□□□ 1.16
DDX41-217ENST00000515562 DPF2Q92785 391 aa22.32■■□□□ 1.16
DDX41-217ENST00000515562 CNOT7Q9UIV1 285 aaKnown RBP22.32■■□□□ 1.16
DDX41-217ENST00000515562 ABT1Q9ULW3 272 aaKnown RBP22.32■■□□□ 1.16
DDX41-217ENST00000515562 SPEF2Q9C093 1822 aa22.31■■□□□ 1.16
DDX41-217ENST00000515562 RASSF10A6NK89 507 aa22.31■■□□□ 1.16
DDX41-217ENST00000515562 H7C1D1 291 aa22.31■■□□□ 1.16
DDX41-217ENST00000515562 DOK7Q18PE1 504 aa22.31■■□□□ 1.16
DDX41-217ENST00000515562 MICALL2Q8IY33 904 aa22.31■■□□□ 1.16
DDX41-217ENST00000515562 GPR101Q96P66 508 aaPredicted RBP22.31■■□□□ 1.16
DDX41-217ENST00000515562 GREM2Q9H772 168 aa22.31■■□□□ 1.16
DDX41-217ENST00000515562 SPINK5Q9NQ38 1064 aaPredicted RBP22.31■■□□□ 1.16
DDX41-217ENST00000515562 G3V3G9 751 aa22.3■■□□□ 1.16
DDX41-217ENST00000515562 DCAF8Q5TAQ9 597 aa22.3■■□□□ 1.16
DDX41-217ENST00000515562 PLA2G12BQ9BX93 195 aa22.3■■□□□ 1.16
DDX41-217ENST00000515562 ZBTB12Q9Y330 459 aaPredicted RBP22.3■■□□□ 1.16
DDX41-217ENST00000515562 VEGFBP49765 207 aa22.29■■□□□ 1.16
DDX41-217ENST00000515562 DEFB115Q30KQ5 88 aa22.29■■□□□ 1.16
DDX41-217ENST00000515562 TRPM4Q8TD43 1214 aa22.29■■□□□ 1.16
DDX41-217ENST00000515562 BSDC1Q9NW68 430 aaPredicted RBP22.29■■□□□ 1.16
DDX41-217ENST00000515562 PGAP2Q9UHJ9 254 aa22.29■■□□□ 1.16
DDX41-217ENST00000515562 SCN9AQ15858 1988 aa22.29■■□□□ 1.16
DDX41-217ENST00000515562 TRAF5O00463 557 aa22.28■■□□□ 1.16
DDX41-217ENST00000515562 ATP2B4P23634 1241 aa22.28■■□□□ 1.16
DDX41-217ENST00000515562 PSME4Q14997 1843 aa22.28■■□□□ 1.16
DDX41-217ENST00000515562 ZNF609O15014 1411 aa22.28■■□□□ 1.16
DDX41-217ENST00000515562 HIRAP54198 1017 aaPredicted RBP22.27■■□□□ 1.16
DDX41-217ENST00000515562 ZNF521Q96K83 1311 aa22.27■■□□□ 1.16
DDX41-217ENST00000515562 SHTN1A0MZ66 631 aa22.26■■□□□ 1.15
DDX41-217ENST00000515562 IGHMBP2P38935 993 aaKnown RBP22.26■■□□□ 1.15
DDX41-217ENST00000515562 CASP7P55210 303 aa22.26■■□□□ 1.15
DDX41-217ENST00000515562 MINPP1Q9UNW1 487 aa22.26■■□□□ 1.15
DDX41-217ENST00000515562 MED23Q9ULK4 1368 aa22.25■■□□□ 1.15
DDX41-217ENST00000515562 THSD7BQ9C0I4 1608 aa22.25■■□□□ 1.15
DDX41-217ENST00000515562 VIL1P09327 827 aaKnown RBP22.25■■□□□ 1.15
DDX41-217ENST00000515562 FMR1Q06787 632 aaKnown RBP eCLIP22.25■■□□□ 1.15
DDX41-217ENST00000515562 COL13A1Q5TAT6 717 aaPredicted RBP22.25■■□□□ 1.15
DDX41-217ENST00000515562 CDC37L1Q7L3B6 337 aa22.25■■□□□ 1.15
DDX41-217ENST00000515562 KCNQ5Q9NR82 932 aa22.25■■□□□ 1.15
DDX41-217ENST00000515562 ITGA6P23229 1130 aa22.24■■□□□ 1.15
DDX41-217ENST00000515562 FAM161AQ3B820 660 aa22.24■■□□□ 1.15
DDX41-217ENST00000515562 CST9Q5W186 159 aa22.24■■□□□ 1.15
DDX41-217ENST00000515562 GLIS2Q9BZE0 524 aaPredicted RBP22.24■■□□□ 1.15
DDX41-217ENST00000515562 CSF1RP07333 972 aa22.23■■□□□ 1.15
DDX41-217ENST00000515562 BEND3Q5T5X7 828 aa22.23■■□□□ 1.15
DDX41-217ENST00000515562 SAMD7Q7Z3H4 446 aa22.23■■□□□ 1.15
DDX41-217ENST00000515562 PODNQ7Z5L7 613 aa22.23■■□□□ 1.15
DDX41-217ENST00000515562 TLL2Q9Y6L7 1015 aa22.23■■□□□ 1.15
DDX41-217ENST00000515562 WDR33Q9C0J8 1336 aaKnown RBP22.23■■□□□ 1.15
DDX41-217ENST00000515562 F6X3S4 739 aa22.22■■□□□ 1.15
DDX41-217ENST00000515562 CELF2O95319 508 aaKnown RBP22.22■■□□□ 1.15
DDX41-217ENST00000515562 ECE1P42892 770 aa22.22■■□□□ 1.15
DDX41-217ENST00000515562 CCT4P50991 539 aaKnown RBP22.22■■□□□ 1.15
DDX41-217ENST00000515562 TBC1D10BQ4KMP7 808 aaPredicted RBP22.22■■□□□ 1.15
DDX41-217ENST00000515562 AGBL3Q8NEM8 1001 aa22.22■■□□□ 1.15
DDX41-217ENST00000515562 AIDAQ96BJ3 306 aa22.22■■□□□ 1.15
DDX41-217ENST00000515562 MPHOSPH8Q99549 860 aa22.22■■□□□ 1.15
DDX41-217ENST00000515562 RSBN1LQ6PCB5 846 aaPredicted RBP22.21■■□□□ 1.15
DDX41-217ENST00000515562 ANKRD2Q9GZV1 360 aa22.21■■□□□ 1.15
DDX41-217ENST00000515562 LEMD3Q9Y2U8 911 aa22.21■■□□□ 1.15
DDX41-217ENST00000515562 EGFRP00533 1210 aa22.2■■□□□ 1.14
DDX41-217ENST00000515562 KIF4BQ2VIQ3 1234 aa22.2■■□□□ 1.14
DDX41-217ENST00000515562 PAXIP1Q6ZW49 1069 aaPredicted RBP22.2■■□□□ 1.14
DDX41-217ENST00000515562 ANKRD18BA2A2Z9 1011 aa22.19■■□□□ 1.14
DDX41-217ENST00000515562 USP17L3A6NCW0 530 aa22.19■■□□□ 1.14
DDX41-217ENST00000515562 USP17L4A6NCW7 530 aa22.19■■□□□ 1.14
DDX41-217ENST00000515562 MAP2K1Q02750 393 aaPredicted RBP22.19■■□□□ 1.14
DDX41-217ENST00000515562 USP17L1Q7RTZ2 530 aa22.19■■□□□ 1.14
DDX41-217ENST00000515562 SAPCD2Q86UD0 394 aa22.19■■□□□ 1.14
DDX41-217ENST00000515562 CAPNS2Q96L46 248 aa22.19■■□□□ 1.14
DDX41-217ENST00000515562 ZNF408Q9H9D4 720 aa22.19■■□□□ 1.14
DDX41-217ENST00000515562 WBP1LQ9NX94 342 aa22.19■■□□□ 1.14
DDX41-217ENST00000515562 E9PSI1 815 aa22.18■■□□□ 1.14
DDX41-217ENST00000515562 GRM8O00222 908 aa22.18■■□□□ 1.14
DDX41-217ENST00000515562 FOXN1O15353 648 aa22.18■■□□□ 1.14
DDX41-217ENST00000515562 ZNF280AP59817 542 aaPredicted RBP22.18■■□□□ 1.14
DDX41-217ENST00000515562 IFIT5Q13325 482 aaKnown RBP22.18■■□□□ 1.14
DDX41-217ENST00000515562 KRT26Q7Z3Y9 468 aa22.18■■□□□ 1.14
DDX41-217ENST00000515562 TNS4Q8IZW8 715 aa22.18■■□□□ 1.14
DDX41-217ENST00000515562 DCPSQ96C86 337 aaKnown RBP22.18■■□□□ 1.14
DDX41-217ENST00000515562 HHIPL1Q96JK4 782 aa22.18■■□□□ 1.14
DDX41-217ENST00000515562 ZNF804BA4D1E1 1349 aa22.17■■□□□ 1.14
DDX41-217ENST00000515562 ALDH1L1O75891 902 aa22.17■■□□□ 1.14
DDX41-217ENST00000515562 RBM26Q5T8P6 1007 aaKnown RBP22.17■■□□□ 1.14
DDX41-217ENST00000515562 USP48Q86UV5 1035 aa22.17■■□□□ 1.14
DDX41-217ENST00000515562 COA1Q9GZY4 146 aa22.17■■□□□ 1.14
DDX41-217ENST00000515562 ZNF646O15015 1829 aaPredicted RBP22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms