RNA–Protein interactions for RNA: ENST00000515351.1

PCDH1-208, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 2,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-208ENST00000515351 IL2RBP14784 551 aa17.78■□□□□ 0.44
PCDH1-208ENST00000515351 TIMM10P62072 90 aa17.78■□□□□ 0.44
PCDH1-208ENST00000515351 Q6ZUG5 572 aa17.78■□□□□ 0.44
PCDH1-208ENST00000515351 HELLSQ9NRZ9 838 aa17.78■□□□□ 0.44
PCDH1-208ENST00000515351 EYA2O00167 538 aa17.77■□□□□ 0.44
PCDH1-208ENST00000515351 PTMAP06454 111 aaKnown RBP17.77■□□□□ 0.44
PCDH1-208ENST00000515351 FAM173BQ6P4H8 233 aa17.77■□□□□ 0.44
PCDH1-208ENST00000515351 ATG3Q9NT62 314 aa17.77■□□□□ 0.44
PCDH1-208ENST00000515351 USP25Q9UHP3 1055 aa17.77■□□□□ 0.44
PCDH1-208ENST00000515351 CIAO1O76071 339 aa17.77■□□□□ 0.43
PCDH1-208ENST00000515351 CARD10Q9BWT7 1032 aa17.77■□□□□ 0.43
PCDH1-208ENST00000515351 TPM2P07951 284 aa17.76■□□□□ 0.43
PCDH1-208ENST00000515351 LRRC24Q50LG9 513 aa17.76■□□□□ 0.43
PCDH1-208ENST00000515351 SCAND2PQ9GZW5 306 aaPredicted RBP17.76■□□□□ 0.43
PCDH1-208ENST00000515351 SOS2Q07890 1332 aaPredicted RBP17.76■□□□□ 0.43
PCDH1-208ENST00000515351 JAK2O60674 1132 aa17.76■□□□□ 0.43
PCDH1-208ENST00000515351 HMGB1P09429 215 aaKnown RBP17.76■□□□□ 0.43
PCDH1-208ENST00000515351 STOX1Q6ZVD7 989 aa17.76■□□□□ 0.43
PCDH1-208ENST00000515351 ZNF594Q96JF6 807 aaPredicted RBP17.76■□□□□ 0.43
PCDH1-208ENST00000515351 DSCC1Q9BVC3 393 aa17.76■□□□□ 0.43
PCDH1-208ENST00000515351 ZMYM1Q5SVZ6 1142 aa17.75■□□□□ 0.43
PCDH1-208ENST00000515351 HSP90B1P14625 803 aaKnown RBP17.75■□□□□ 0.43
PCDH1-208ENST00000515351 HSPA2P54652 639 aa17.75■□□□□ 0.43
PCDH1-208ENST00000515351 MYH7P12883 1935 aa17.74■□□□□ 0.43
PCDH1-208ENST00000515351 A0A1B0GUL7 405 aa17.74■□□□□ 0.43
PCDH1-208ENST00000515351 ADCY5O95622 1261 aa17.74■□□□□ 0.43
PCDH1-208ENST00000515351 SLFNL1Q499Z3 407 aa17.74■□□□□ 0.43
PCDH1-208ENST00000515351 BRF1Q92994 677 aa17.74■□□□□ 0.43
PCDH1-208ENST00000515351 KDM4AO75164 1064 aa17.74■□□□□ 0.43
PCDH1-208ENST00000515351 TERF1P54274 439 aa17.74■□□□□ 0.43
PCDH1-208ENST00000515351 SPATA32Q96LK8 384 aa17.74■□□□□ 0.43
PCDH1-208ENST00000515351 ISCA1Q9BUE6 129 aa17.74■□□□□ 0.43
PCDH1-208ENST00000515351 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.74■□□□□ 0.43
PCDH1-208ENST00000515351 IFIT1P09914 478 aaKnown RBP17.73■□□□□ 0.43
PCDH1-208ENST00000515351 DHX32Q7L7V1 743 aaKnown RBP17.73■□□□□ 0.43
PCDH1-208ENST00000515351 CCDC192P0DO97 292 aa17.73■□□□□ 0.43
PCDH1-208ENST00000515351 LIG1P18858 919 aa17.73■□□□□ 0.43
PCDH1-208ENST00000515351 SCRN1Q12765 414 aa17.73■□□□□ 0.43
PCDH1-208ENST00000515351 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.73■□□□□ 0.43
PCDH1-208ENST00000515351 LEO1Q8WVC0 666 aaPredicted RBP17.73■□□□□ 0.43
PCDH1-208ENST00000515351 LLPHQ9BRT6 129 aaKnown RBP17.73■□□□□ 0.43
PCDH1-208ENST00000515351 LRRC2Q9BYS8 371 aa17.73■□□□□ 0.43
PCDH1-208ENST00000515351 PUS3Q9BZE2 481 aaKnown RBP17.73■□□□□ 0.43
PCDH1-208ENST00000515351 TFIP11Q9UBB9 837 aaKnown RBP17.73■□□□□ 0.43
PCDH1-208ENST00000515351 MAST3O60307 1309 aa17.72■□□□□ 0.43
PCDH1-208ENST00000515351 ITGB4P16144 1822 aa17.72■□□□□ 0.43
PCDH1-208ENST00000515351 PFKFB2O60825 505 aa17.72■□□□□ 0.43
PCDH1-208ENST00000515351 FGD1P98174 961 aa17.72■□□□□ 0.43
PCDH1-208ENST00000515351 NUP62CLQ9H1M0 184 aa17.72■□□□□ 0.43
PCDH1-208ENST00000515351 RNF113AO15541 343 aaKnown RBP17.72■□□□□ 0.43
PCDH1-208ENST00000515351 HSPD1P10809 573 aaKnown RBP17.72■□□□□ 0.43
PCDH1-208ENST00000515351 RESTQ13127 1097 aa17.72■□□□□ 0.43
PCDH1-208ENST00000515351 TCIRG1Q13488 830 aa17.72■□□□□ 0.43
PCDH1-208ENST00000515351 SMARCC2Q8TAQ2 1214 aa17.72■□□□□ 0.43
PCDH1-208ENST00000515351 MAP3K11Q16584 847 aa17.71■□□□□ 0.43
PCDH1-208ENST00000515351 AGXT2Q9BYV1 514 aa17.71■□□□□ 0.43
PCDH1-208ENST00000515351 CEP126Q9P2H0 1117 aa17.71■□□□□ 0.43
PCDH1-208ENST00000515351 NWD2Q9ULI1 1742 aa17.71■□□□□ 0.43
PCDH1-208ENST00000515351 GOLGA6L4A6NEF3 574 aa17.71■□□□□ 0.42
PCDH1-208ENST00000515351 EXOSC10Q01780 885 aaKnown RBP17.71■□□□□ 0.42
PCDH1-208ENST00000515351 STRN4Q9NRL3 753 aa17.71■□□□□ 0.42
PCDH1-208ENST00000515351 SLAIN2Q9P270 581 aa17.71■□□□□ 0.42
PCDH1-208ENST00000515351 MYH3P11055 1940 aa17.71■□□□□ 0.42
PCDH1-208ENST00000515351 TRIM28Q13263 835 aaKnown RBP17.7■□□□□ 0.42
PCDH1-208ENST00000515351 CCDC57Q2TAC2 916 aa17.7■□□□□ 0.42
PCDH1-208ENST00000515351 DDX11Q96FC9 970 aa17.7■□□□□ 0.42
PCDH1-208ENST00000515351 TMOD3Q9NYL9 352 aa17.7■□□□□ 0.42
PCDH1-208ENST00000515351 FBXO3Q9UK99 471 aa17.7■□□□□ 0.42
PCDH1-208ENST00000515351 STRCQ7RTU9 1775 aa17.7■□□□□ 0.42
PCDH1-208ENST00000515351 H3BQV1 296 aa17.7■□□□□ 0.42
PCDH1-208ENST00000515351 KIAA2012Q0VF49 1180 aa17.7■□□□□ 0.42
PCDH1-208ENST00000515351 IFFO2Q5TF58 517 aa17.7■□□□□ 0.42
PCDH1-208ENST00000515351 ZSCAN16Q9H4T2 348 aaPredicted RBP17.7■□□□□ 0.42
PCDH1-208ENST00000515351 DACT1Q9NYF0 836 aa17.7■□□□□ 0.42
PCDH1-208ENST00000515351 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.69■□□□□ 0.42
PCDH1-208ENST00000515351 E7EWF7 191 aa17.69■□□□□ 0.42
PCDH1-208ENST00000515351 NSUN7Q8NE18 718 aaKnown RBP17.69■□□□□ 0.42
PCDH1-208ENST00000515351 CAMK4Q16566 473 aa17.69■□□□□ 0.42
PCDH1-208ENST00000515351 DDX19AQ9NUU7 478 aaKnown RBP17.69■□□□□ 0.42
PCDH1-208ENST00000515351 R3HCC1Q9Y3T6 440 aaKnown RBP17.69■□□□□ 0.42
PCDH1-208ENST00000515351 ANKRD36CQ5JPF3 1778 aa17.68■□□□□ 0.42
PCDH1-208ENST00000515351 A0A0G2JLW4 131 aa17.68■□□□□ 0.42
PCDH1-208ENST00000515351 M0R2C6 588 aa17.68■□□□□ 0.42
PCDH1-208ENST00000515351 EVA1CP58658 441 aa17.68■□□□□ 0.42
PCDH1-208ENST00000515351 APOBRQ0VD83 1088 aa17.68■□□□□ 0.42
PCDH1-208ENST00000515351 TNMDQ9H2S6 317 aa17.68■□□□□ 0.42
PCDH1-208ENST00000515351 AKAP2Q9Y2D5 859 aa17.68■□□□□ 0.42
PCDH1-208ENST00000515351 DDX60Q8IY21 1712 aaKnown RBP17.68■□□□□ 0.42
PCDH1-208ENST00000515351 CTDNEP1O95476 244 aa17.67■□□□□ 0.42
PCDH1-208ENST00000515351 PCCAP05165 728 aaPredicted RBP17.67■□□□□ 0.42
PCDH1-208ENST00000515351 CCDC158Q5M9N0 1113 aa17.67■□□□□ 0.42
PCDH1-208ENST00000515351 PGBD1Q96JS3 809 aa17.67■□□□□ 0.42
PCDH1-208ENST00000515351 PLA2G12BQ9BX93 195 aa17.67■□□□□ 0.42
PCDH1-208ENST00000515351 ZNF330Q9Y3S2 320 aaPredicted RBP17.67■□□□□ 0.42
PCDH1-208ENST00000515351 AKAP11Q9UKA4 1901 aa17.67■□□□□ 0.42
PCDH1-208ENST00000515351 AP5Z1O43299 807 aa17.67■□□□□ 0.42
PCDH1-208ENST00000515351 HMGN5P82970 282 aaKnown RBP17.67■□□□□ 0.42
PCDH1-208ENST00000515351 FKBP4Q02790 459 aaKnown RBP eCLIP17.67■□□□□ 0.42
PCDH1-208ENST00000515351 TYRO3Q06418 890 aa17.67■□□□□ 0.42
PCDH1-208ENST00000515351 NAA16Q6N069 864 aaPredicted RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms