RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 CRAMP1Q96RY5 1269 aa16.03■□□□□ 0.16
LIMCH1-220ENST00000514190 MPHOSPH8Q99549 860 aa16.03■□□□□ 0.16
LIMCH1-220ENST00000514190 IL1RAPL2Q9NP60 686 aa16.03■□□□□ 0.16
LIMCH1-220ENST00000514190 CNNM1Q9NRU3 951 aa16.03■□□□□ 0.16
LIMCH1-220ENST00000514190 CEP126Q9P2H0 1117 aa16.03■□□□□ 0.16
LIMCH1-220ENST00000514190 WWC3Q9ULE0 1092 aa16.03■□□□□ 0.16
LIMCH1-220ENST00000514190 MYH3P11055 1940 aa16.03■□□□□ 0.16
LIMCH1-220ENST00000514190 BRCA1P38398 1863 aaKnown RBP16.02■□□□□ 0.16
LIMCH1-220ENST00000514190 A0A0G2JLW4 131 aa16.02■□□□□ 0.16
LIMCH1-220ENST00000514190 SRGNP10124 158 aa16.02■□□□□ 0.16
LIMCH1-220ENST00000514190 DPEP1P16444 411 aa16.02■□□□□ 0.16
LIMCH1-220ENST00000514190 GRAPQ13588 217 aa16.02■□□□□ 0.16
LIMCH1-220ENST00000514190 CLASRPQ8N2M8 674 aaKnown RBP16.02■□□□□ 0.16
LIMCH1-220ENST00000514190 GRAPLQ8TC17 118 aaPredicted RBP16.02■□□□□ 0.16
LIMCH1-220ENST00000514190 GPR108Q9NPR9 543 aa16.02■□□□□ 0.16
LIMCH1-220ENST00000514190 BSDC1Q9NW68 430 aaPredicted RBP16.02■□□□□ 0.16
LIMCH1-220ENST00000514190 NPR1P16066 1061 aa16.01■□□□□ 0.15
LIMCH1-220ENST00000514190 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.01■□□□□ 0.15
LIMCH1-220ENST00000514190 MROH5Q6ZUA9 1318 aa16■□□□□ 0.15
LIMCH1-220ENST00000514190 TNRC6CQ9HCJ0 1690 aaKnown RBP16■□□□□ 0.15
LIMCH1-220ENST00000514190 H0YIN7 160 aa16■□□□□ 0.15
LIMCH1-220ENST00000514190 BBOX1O75936 387 aa16■□□□□ 0.15
LIMCH1-220ENST00000514190 RGS3P49796 1198 aa16■□□□□ 0.15
LIMCH1-220ENST00000514190 METTL24Q5JXM2 366 aa16■□□□□ 0.15
LIMCH1-220ENST00000514190 C2CD5Q86YS7 1000 aa16■□□□□ 0.15
LIMCH1-220ENST00000514190 ZNF784Q8NCA9 323 aaPredicted RBP16■□□□□ 0.15
LIMCH1-220ENST00000514190 EAF2Q96CJ1 260 aaPredicted RBP16■□□□□ 0.15
LIMCH1-220ENST00000514190 BCL11AQ9H165 835 aa16■□□□□ 0.15
LIMCH1-220ENST00000514190 ALDH1B1P30837 517 aa15.99■□□□□ 0.15
LIMCH1-220ENST00000514190 PLEKHM2Q8IWE5 1019 aa15.99■□□□□ 0.15
LIMCH1-220ENST00000514190 OTUD7AQ8TE49 926 aaPredicted RBP15.99■□□□□ 0.15
LIMCH1-220ENST00000514190 MASTLQ96GX5 879 aa15.99■□□□□ 0.15
LIMCH1-220ENST00000514190 MINPP1Q9UNW1 487 aa15.99■□□□□ 0.15
LIMCH1-220ENST00000514190 BCS1LQ9Y276 419 aa15.99■□□□□ 0.15
LIMCH1-220ENST00000514190 AKAP2Q9Y2D5 859 aa15.99■□□□□ 0.15
LIMCH1-220ENST00000514190 PDE8BO95263 885 aa15.98■□□□□ 0.15
LIMCH1-220ENST00000514190 KCNA3P22001 575 aa15.98■□□□□ 0.15
LIMCH1-220ENST00000514190 TNNI3KQ59H18 835 aa15.98■□□□□ 0.15
LIMCH1-220ENST00000514190 STYK1Q6J9G0 422 aa15.98■□□□□ 0.15
LIMCH1-220ENST00000514190 AACSQ86V21 672 aa15.98■□□□□ 0.15
LIMCH1-220ENST00000514190 VGLL2Q8N8G2 317 aa15.98■□□□□ 0.15
LIMCH1-220ENST00000514190 STAP2Q9UGK3 403 aa15.98■□□□□ 0.15
LIMCH1-220ENST00000514190 FPGT-TNNI3KV9GXZ4 949 aa15.98■□□□□ 0.15
LIMCH1-220ENST00000514190 SALL3Q9BXA9 1300 aa15.97■□□□□ 0.15
LIMCH1-220ENST00000514190 ARFGEF1Q9Y6D6 1849 aa15.97■□□□□ 0.15
LIMCH1-220ENST00000514190 IFIT2P09913 472 aaKnown RBP15.97■□□□□ 0.15
LIMCH1-220ENST00000514190 CHRNDQ07001 517 aa15.97■□□□□ 0.15
LIMCH1-220ENST00000514190 TMC4Q7Z404 712 aa15.97■□□□□ 0.15
LIMCH1-220ENST00000514190 HELBQ8NG08 1087 aaPredicted RBP15.97■□□□□ 0.15
LIMCH1-220ENST00000514190 CCDC8Q9H0W5 538 aaPredicted RBP15.97■□□□□ 0.15
LIMCH1-220ENST00000514190 PIM2Q9P1W9 311 aa15.97■□□□□ 0.15
LIMCH1-220ENST00000514190 MX1P20591 662 aa15.96■□□□□ 0.15
LIMCH1-220ENST00000514190 CHRNA5P30532 468 aa15.96■□□□□ 0.15
LIMCH1-220ENST00000514190 PDE1AP54750 535 aa15.96■□□□□ 0.15
LIMCH1-220ENST00000514190 TIMM10P62072 90 aa15.96■□□□□ 0.15
LIMCH1-220ENST00000514190 ZNF622Q969S3 477 aaKnown RBP eCLIP15.96■□□□□ 0.15
LIMCH1-220ENST00000514190 ANKRD2Q9GZV1 360 aa15.96■□□□□ 0.15
LIMCH1-220ENST00000514190 OSBPL3Q9H4L5 887 aa15.96■□□□□ 0.15
LIMCH1-220ENST00000514190 ANKRD31Q8N7Z5 1873 aa15.96■□□□□ 0.15
LIMCH1-220ENST00000514190 COL4A1P02462 1669 aa15.95■□□□□ 0.14
LIMCH1-220ENST00000514190 DLEC1Q9Y238 1755 aa15.95■□□□□ 0.14
LIMCH1-220ENST00000514190 A0A1B0GUL7 405 aa15.95■□□□□ 0.14
LIMCH1-220ENST00000514190 TAF5LO75529 589 aa15.95■□□□□ 0.14
LIMCH1-220ENST00000514190 ATP2B3Q16720 1220 aa15.95■□□□□ 0.14
LIMCH1-220ENST00000514190 SP8Q8IXZ3 490 aa15.95■□□□□ 0.14
LIMCH1-220ENST00000514190 CNKSR1Q969H4 720 aa15.95■□□□□ 0.14
LIMCH1-220ENST00000514190 NEUROD6Q96NK8 337 aa15.95■□□□□ 0.14
LIMCH1-220ENST00000514190 FGFR2P21802 821 aa15.94■□□□□ 0.14
LIMCH1-220ENST00000514190 PUM3Q15397 648 aaKnown RBP15.94■□□□□ 0.14
LIMCH1-220ENST00000514190 DALRD3Q5D0E6 543 aaKnown RBP15.94■□□□□ 0.14
LIMCH1-220ENST00000514190 DBNDD2Q9BQY9 259 aa15.94■□□□□ 0.14
LIMCH1-220ENST00000514190 ECHDC1Q9NTX5 307 aa15.94■□□□□ 0.14
LIMCH1-220ENST00000514190 DBNLQ9UJU6 430 aaKnown RBP15.94■□□□□ 0.14
LIMCH1-220ENST00000514190 UBE4AQ14139 1066 aa15.93■□□□□ 0.14
LIMCH1-220ENST00000514190 LPIN2Q92539 896 aa15.93■□□□□ 0.14
LIMCH1-220ENST00000514190 XAGE2Q96GT9 111 aa15.93■□□□□ 0.14
LIMCH1-220ENST00000514190 GPATCH3Q96I76 525 aa15.93■□□□□ 0.14
LIMCH1-220ENST00000514190 TLR7Q9NYK1 1049 aaKnown RBP15.93■□□□□ 0.14
LIMCH1-220ENST00000514190 ATP6V0A2Q9Y487 856 aa15.93■□□□□ 0.14
LIMCH1-220ENST00000514190 AOX1Q06278 1338 aa15.93■□□□□ 0.14
LIMCH1-220ENST00000514190 TTC41PQ6P2S7 1318 aa15.93■□□□□ 0.14
LIMCH1-220ENST00000514190 PPEF1O14829 653 aaPredicted RBP15.92■□□□□ 0.14
LIMCH1-220ENST00000514190 TAF1P21675 1872 aa15.92■□□□□ 0.14
LIMCH1-220ENST00000514190 ZNF609O15014 1411 aa15.92■□□□□ 0.14
LIMCH1-220ENST00000514190 SNAP23O00161 211 aa15.91■□□□□ 0.14
LIMCH1-220ENST00000514190 IFIT1P09914 478 aaKnown RBP15.91■□□□□ 0.14
LIMCH1-220ENST00000514190 SLC5A1P13866 664 aa15.91■□□□□ 0.14
LIMCH1-220ENST00000514190 ADORA1P30542 326 aa15.91■□□□□ 0.14
LIMCH1-220ENST00000514190 TTC22Q5TAA0 569 aa15.91■□□□□ 0.14
LIMCH1-220ENST00000514190 ARHGAP27Q6ZUM4 889 aa15.91■□□□□ 0.14
LIMCH1-220ENST00000514190 LEMD3Q9Y2U8 911 aa15.91■□□□□ 0.14
LIMCH1-220ENST00000514190 XDHP47989 1333 aa15.91■□□□□ 0.14
LIMCH1-220ENST00000514190 ERC2O15083 957 aa15.9■□□□□ 0.14
LIMCH1-220ENST00000514190 GLRX3O76003 335 aaKnown RBP15.9■□□□□ 0.14
LIMCH1-220ENST00000514190 ATP5JP18859 108 aa15.9■□□□□ 0.14
LIMCH1-220ENST00000514190 GPSM2P81274 684 aa15.9■□□□□ 0.14
LIMCH1-220ENST00000514190 BMP2KLQ5H9B9 411 aa15.9■□□□□ 0.14
LIMCH1-220ENST00000514190 GORABQ5T7V8 394 aa15.9■□□□□ 0.14
LIMCH1-220ENST00000514190 TSHZ3Q63HK5 1081 aa15.9■□□□□ 0.14
LIMCH1-220ENST00000514190 PRPF40BQ6NWY9 871 aaKnown RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms