RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 EME2A4GXA9 379 aaPredicted RBP13.88□□□□□ -0.19
LIMCH1-213ENST00000511496 CHMP4BP1P59074 171 aa13.88□□□□□ -0.19
LIMCH1-213ENST00000511496 CCDC12Q8WUD4 166 aaPredicted RBP13.88□□□□□ -0.19
LIMCH1-213ENST00000511496 MPHOSPH8Q99549 860 aa13.88□□□□□ -0.19
LIMCH1-213ENST00000511496 L1RE1Q9UN81 338 aa13.88□□□□□ -0.19
LIMCH1-213ENST00000511496 SGSM2O43147 1006 aa13.88□□□□□ -0.19
LIMCH1-213ENST00000511496 AP1G2O75843 785 aa13.88□□□□□ -0.19
LIMCH1-213ENST00000511496 NAA25Q14CX7 972 aa13.88□□□□□ -0.19
LIMCH1-213ENST00000511496 IQCA1Q86XH1 822 aa13.88□□□□□ -0.19
LIMCH1-213ENST00000511496 THOC1Q96FV9 657 aaKnown RBP13.88□□□□□ -0.19
LIMCH1-213ENST00000511496 EHD4Q9H223 541 aa13.88□□□□□ -0.19
LIMCH1-213ENST00000511496 ERCC3P19447 782 aa13.87□□□□□ -0.19
LIMCH1-213ENST00000511496 ZKSCAN8Q15776 578 aaPredicted RBP13.87□□□□□ -0.19
LIMCH1-213ENST00000511496 ABCA10Q8WWZ4 1543 aa13.87□□□□□ -0.19
LIMCH1-213ENST00000511496 CHUKO15111 745 aa13.87□□□□□ -0.19
LIMCH1-213ENST00000511496 KARSQ15046 597 aaKnown RBP13.87□□□□□ -0.19
LIMCH1-213ENST00000511496 POTEDQ86YR6 584 aa13.87□□□□□ -0.19
LIMCH1-213ENST00000511496 RIN2Q8WYP3 895 aaPredicted RBP13.87□□□□□ -0.19
LIMCH1-213ENST00000511496 SPG7Q9UQ90 795 aa13.87□□□□□ -0.19
LIMCH1-213ENST00000511496 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.87□□□□□ -0.19
LIMCH1-213ENST00000511496 BCAS4Q8TDM0 211 aa13.87□□□□□ -0.19
LIMCH1-213ENST00000511496 JAKMIP1Q96N16 626 aaKnown RBP13.87□□□□□ -0.19
LIMCH1-213ENST00000511496 NAT10Q9H0A0 1025 aaKnown RBP13.87□□□□□ -0.19
LIMCH1-213ENST00000511496 ZSCAN12O43309 604 aa13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 ME3Q16798 604 aa13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 HYPKQ9NX55 129 aa13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 MSH6P52701 1360 aa13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 VWA3AA6NCI4 1184 aa13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 C8orf58Q8NAV2 365 aa13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 ITFG2Q969R8 447 aa13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 ANKZF1Q9H8Y5 726 aa13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 TTC21AQ8NDW8 1320 aa13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 HMMRO75330 724 aa13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 LMOD1P29536 600 aaPredicted RBP13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 GDAP1L1Q96MZ0 367 aa13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 KIF9Q9HAQ2 790 aa13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 ETAA1Q9NY74 926 aa13.86□□□□□ -0.19
LIMCH1-213ENST00000511496 LRRIQ3A6PVS8 624 aaPredicted RBP13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 KINO60870 393 aaKnown RBP13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 RPSAP08865 295 aaKnown RBP13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 LARP1Q6PKG0 1096 aaKnown RBP13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 ANKRD18AQ8IVF6 992 aa13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 CCAR1Q8IX12 1150 aaKnown RBP13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 ARMC2Q8NEN0 867 aa13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 ZNF483Q8TF39 744 aaPredicted RBP13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 TACO1Q9BSH4 297 aaKnown RBP13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 OSBPL3Q9H4L5 887 aa13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 SPATS2LQ9NUQ6 558 aaKnown RBP13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 PPP2R2CQ9Y2T4 447 aa13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 PIK3R4Q99570 1358 aa13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 BIN1O00499 593 aa13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 PSMD2Q13200 908 aa13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 SNX1Q13596 522 aa13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 ZC3H12AQ5D1E8 599 aaKnown RBP13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 OTUD6BQ8N6M0 293 aa13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 PIK3R5Q8WYR1 880 aa13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 KCNB2Q92953 911 aa13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 IRX2Q9BZI1 471 aaPredicted RBP13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 MYOM1P52179 1685 aa13.85□□□□□ -0.19
LIMCH1-213ENST00000511496 VSNL1P62760 191 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 STK3Q13188 491 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 SLC4A10Q6U841 1118 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 IGSF22Q8N9C0 903 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 SDF4Q9BRK5 362 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 NUCKS1Q9H1E3 243 aaKnown RBP13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 A0A1B0GUA9 196 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 SHTN1A0MZ66 631 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 KIAA0754O94854 1291 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 MYBL2P10244 700 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 FOSBP53539 338 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 TCEANC2Q96MN5 208 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 TTC36A6NLP5 189 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 SSBP05455 408 aaKnown RBP eCLIP13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 PSME1Q06323 249 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 CRYMQ14894 314 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 CCDC73Q6ZRK6 1079 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 PDILTQ8N807 584 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 A1CFQ9NQ94 594 aaKnown RBP13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 PTCH1Q13635 1447 aa13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 RNF17Q9BXT8 1623 aaKnown RBP13.84□□□□□ -0.19
LIMCH1-213ENST00000511496 ADCK5Q3MIX3 580 aa13.83□□□□□ -0.19
LIMCH1-213ENST00000511496 HNRNPLLQ8WVV9 542 aaKnown RBP13.83□□□□□ -0.19
LIMCH1-213ENST00000511496 KAT14Q9H8E8 782 aa13.83□□□□□ -0.19
LIMCH1-213ENST00000511496 FAM135BQ49AJ0 1406 aa13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 IPO7O95373 1038 aaKnown RBP13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 TFRCP02786 760 aaKnown RBP13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 ADCY2Q08462 1091 aa13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 ST3GAL1Q11201 340 aa13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 E2F5Q15329 346 aa13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 PREPLQ4J6C6 727 aaPredicted RBP13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 ZBTB10Q96DT7 871 aa13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 MBIPQ9NS73 344 aa13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 RPGRIP1LQ68CZ1 1315 aa13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 KCNJ6P48051 423 aa13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 SRGAP1Q7Z6B7 1085 aa13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 PARD3BQ8TEW8 1205 aa13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 TATDN2Q93075 761 aa13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 SH3GL3Q99963 347 aa13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 GGNBP2Q9H3C7 697 aa13.83□□□□□ -0.2
LIMCH1-213ENST00000511496 ENO4A6NNW6 628 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms