RNA–Protein interactions for RNA: ENST00000509774.5

PTPN20-222, Transcript of protein tyrosine phosphatase, non-receptor type 20, human

TSL 1 (best) BASIC

Gene PTPN20, Length 788 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN20-222	ENST00000509774		A0A0C4DFX4	3053 aa		13.33	□□□□□ -0.27
PTPN20-222	ENST00000509774	CEP290	O15078	2479 aa		13.33	□□□□□ -0.28
PTPN20-222	ENST00000509774	FAM155A	B1AL88	458 aa	Predicted RBP	13.33	□□□□□ -0.28
PTPN20-222	ENST00000509774	STK25	O00506	426 aa		13.33	□□□□□ -0.28
PTPN20-222	ENST00000509774	TRPA1	O75762	1119 aa		13.33	□□□□□ -0.28
PTPN20-222	ENST00000509774	EIF6	P56537	245 aa	Known RBP	13.33	□□□□□ -0.28
PTPN20-222	ENST00000509774	GNAI1	P63096	354 aa		13.33	□□□□□ -0.28
PTPN20-222	ENST00000509774	JDP2	Q8WYK2	163 aa		13.33	□□□□□ -0.28
PTPN20-222	ENST00000509774	IFT57	Q9NWB7	429 aa		13.33	□□□□□ -0.28
PTPN20-222	ENST00000509774	STARD3NL	O95772	234 aa		13.32	□□□□□ -0.28
PTPN20-222	ENST00000509774	SNRPA1	P09661	255 aa	Known RBP	13.32	□□□□□ -0.28
PTPN20-222	ENST00000509774	ZNF853	P0CG23	659 aa		13.32	□□□□□ -0.28
PTPN20-222	ENST00000509774	NPR1	P16066	1061 aa		13.32	□□□□□ -0.28
PTPN20-222	ENST00000509774	ST5	P78524	1137 aa		13.32	□□□□□ -0.28
PTPN20-222	ENST00000509774	ZNF496	Q96IT1	587 aa	Predicted RBP	13.32	□□□□□ -0.28
PTPN20-222	ENST00000509774	THUMPD2	Q9BTF0	503 aa	Known RBP	13.32	□□□□□ -0.28
PTPN20-222	ENST00000509774	CHMP4A	Q9BY43	222 aa		13.32	□□□□□ -0.28
PTPN20-222	ENST00000509774	ZNF408	Q9H9D4	720 aa		13.32	□□□□□ -0.28
PTPN20-222	ENST00000509774	TSPYL4	Q9UJ04	414 aa		13.32	□□□□□ -0.28
PTPN20-222	ENST00000509774	KIAA0100	Q14667	2235 aa	Known RBP	13.32	□□□□□ -0.28
PTPN20-222	ENST00000509774	NPHP1	O15259	732 aa		13.31	□□□□□ -0.28
PTPN20-222	ENST00000509774	TBC1D2B	Q9UPU7	963 aa		13.31	□□□□□ -0.28
PTPN20-222	ENST00000509774	HEG1	Q9ULI3	1381 aa		13.31	□□□□□ -0.28
PTPN20-222	ENST00000509774	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.3	□□□□□ -0.28
PTPN20-222	ENST00000509774		A0A087WZG4	1122 aa		13.3	□□□□□ -0.28
PTPN20-222	ENST00000509774	HUNK	P57058	714 aa		13.3	□□□□□ -0.28
PTPN20-222	ENST00000509774	EIF4A1	P60842	406 aa	Known RBP	13.3	□□□□□ -0.28
PTPN20-222	ENST00000509774	KIF23	Q02241	960 aa	Predicted RBP	13.3	□□□□□ -0.28
PTPN20-222	ENST00000509774	SETDB2	Q96T68	719 aa		13.3	□□□□□ -0.28
PTPN20-222	ENST00000509774	PSMD1	Q99460	953 aa		13.3	□□□□□ -0.28
PTPN20-222	ENST00000509774	PGAP2	Q9UHJ9	254 aa		13.3	□□□□□ -0.28
PTPN20-222	ENST00000509774	PAPPA2	Q9BXP8	1791 aa		13.3	□□□□□ -0.28
PTPN20-222	ENST00000509774	KLRG2	A4D1S0	409 aa	Predicted RBP	13.29	□□□□□ -0.28
PTPN20-222	ENST00000509774	KCNQ3	O43525	872 aa		13.29	□□□□□ -0.28
PTPN20-222	ENST00000509774	HOXB7	P09629	217 aa		13.29	□□□□□ -0.28
PTPN20-222	ENST00000509774	FBXO22	Q8NEZ5	403 aa		13.29	□□□□□ -0.28
PTPN20-222	ENST00000509774	ADARB2	Q9NS39	739 aa	Known RBP	13.29	□□□□□ -0.28
PTPN20-222	ENST00000509774	MIS18A	Q9NYP9	233 aa		13.29	□□□□□ -0.28
PTPN20-222	ENST00000509774	GPRC5D	Q9NZD1	345 aa		13.29	□□□□□ -0.28
PTPN20-222	ENST00000509774	PKN2	Q16513	984 aa	Known RBP	13.28	□□□□□ -0.28
PTPN20-222	ENST00000509774	DLG5	Q8TDM6	1919 aa		13.27	□□□□□ -0.28
PTPN20-222	ENST00000509774	CAMTA2	O94983	1202 aa		13.27	□□□□□ -0.29
PTPN20-222	ENST00000509774	RGMB	Q6NW40	437 aa		13.27	□□□□□ -0.29
PTPN20-222	ENST00000509774	DLK2	Q6UY11	383 aa		13.27	□□□□□ -0.29
PTPN20-222	ENST00000509774	SLC17A8	Q8NDX2	589 aa		13.27	□□□□□ -0.29
PTPN20-222	ENST00000509774	LAS1L	Q9Y4W2	734 aa	Known RBP	13.27	□□□□□ -0.29
PTPN20-222	ENST00000509774	COL6A3	P12111	3177 aa		13.27	□□□□□ -0.29
PTPN20-222	ENST00000509774	SIPA1L3	O60292	1781 aa	Predicted RBP	13.27	□□□□□ -0.29
PTPN20-222	ENST00000509774	HIRA	P54198	1017 aa	Predicted RBP	13.26	□□□□□ -0.29
PTPN20-222	ENST00000509774	ZNF521	Q96K83	1311 aa		13.26	□□□□□ -0.29
PTPN20-222	ENST00000509774	CSRNP1	Q96S65	589 aa		13.26	□□□□□ -0.29
PTPN20-222	ENST00000509774	MFRP	Q9BY79	579 aa		13.26	□□□□□ -0.29
PTPN20-222	ENST00000509774	MYH16	Q9H6N6	1097 aa		13.26	□□□□□ -0.29
PTPN20-222	ENST00000509774	MBIP	Q9NS73	344 aa		13.26	□□□□□ -0.29
PTPN20-222	ENST00000509774	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.26	□□□□□ -0.29
PTPN20-222	ENST00000509774	HTT	P42858	3142 aa		13.25	□□□□□ -0.29
PTPN20-222	ENST00000509774	ERBB4	Q15303	1308 aa		13.25	□□□□□ -0.29
PTPN20-222	ENST00000509774	VARS2	Q5ST30	1063 aa	Known RBP	13.25	□□□□□ -0.29
PTPN20-222	ENST00000509774	CDC37L1	Q7L3B6	337 aa		13.25	□□□□□ -0.29
PTPN20-222	ENST00000509774	ZSWIM6	Q9HCJ5	1215 aa		13.25	□□□□□ -0.29
PTPN20-222	ENST00000509774	SALL2	Q9Y467	1007 aa	Predicted RBP	13.25	□□□□□ -0.29
PTPN20-222	ENST00000509774	USP16	Q9Y5T5	823 aa		13.25	□□□□□ -0.29
PTPN20-222	ENST00000509774	RGL2	O15211	777 aa		13.24	□□□□□ -0.29
PTPN20-222	ENST00000509774	IL6ST	P40189	918 aa	Predicted RBP	13.24	□□□□□ -0.29
PTPN20-222	ENST00000509774	NPM2	Q86SE8	214 aa	Known RBP	13.24	□□□□□ -0.29
PTPN20-222	ENST00000509774	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.24	□□□□□ -0.29
PTPN20-222	ENST00000509774	LARGE2	Q8N3Y3	721 aa		13.24	□□□□□ -0.29
PTPN20-222	ENST00000509774	CCDC102A	Q96A19	550 aa		13.24	□□□□□ -0.29
PTPN20-222	ENST00000509774		E9PSI1	815 aa		13.23	□□□□□ -0.29
PTPN20-222	ENST00000509774	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.23	□□□□□ -0.29
PTPN20-222	ENST00000509774	SLC51A	Q86UW1	340 aa		13.23	□□□□□ -0.29
PTPN20-222	ENST00000509774	ZC3H15	Q8WU90	426 aa	Known RBP	13.23	□□□□□ -0.29
PTPN20-222	ENST00000509774	CENPF	P49454	3210 aa		13.23	□□□□□ -0.29
PTPN20-222	ENST00000509774	ALDH1B1	P30837	517 aa		13.22	□□□□□ -0.29
PTPN20-222	ENST00000509774	GMPS	P49915	693 aa	Predicted RBP	13.22	□□□□□ -0.29
PTPN20-222	ENST00000509774	ZNF157	P51786	506 aa	Predicted RBP	13.22	□□□□□ -0.29
PTPN20-222	ENST00000509774	USP48	Q86UV5	1035 aa		13.22	□□□□□ -0.29
PTPN20-222	ENST00000509774	TRPM4	Q8TD43	1214 aa		13.22	□□□□□ -0.29
PTPN20-222	ENST00000509774	ZNF296	Q8WUU4	475 aa	Predicted RBP	13.22	□□□□□ -0.29
PTPN20-222	ENST00000509774	HDAC9	Q9UKV0	1011 aa		13.22	□□□□□ -0.29
PTPN20-222	ENST00000509774	A1BG	P04217	495 aa		13.21	□□□□□ -0.29
PTPN20-222	ENST00000509774	SLC10A3	P09131	477 aa		13.21	□□□□□ -0.29
PTPN20-222	ENST00000509774	CXCL9	Q07325	125 aa		13.21	□□□□□ -0.29
PTPN20-222	ENST00000509774	DUSP27	Q5VZP5	1158 aa		13.21	□□□□□ -0.29
PTPN20-222	ENST00000509774	NIM1K	Q8IY84	436 aa		13.21	□□□□□ -0.29
PTPN20-222	ENST00000509774	GBA2	Q9HCG7	927 aa	Predicted RBP	13.21	□□□□□ -0.29
PTPN20-222	ENST00000509774	BRCA2	P51587	3418 aa		13.21	□□□□□ -0.3
PTPN20-222	ENST00000509774	SLFN5	Q08AF3	891 aa		13.2	□□□□□ -0.3
PTPN20-222	ENST00000509774	CC2D2B	Q6DHV5	1058 aa		13.2	□□□□□ -0.3
PTPN20-222	ENST00000509774	GPR153	Q6NV75	609 aa		13.2	□□□□□ -0.3
PTPN20-222	ENST00000509774	SHTN1	A0MZ66	631 aa		13.19	□□□□□ -0.3
PTPN20-222	ENST00000509774	PRAMEF22	A3QJZ6	481 aa		13.19	□□□□□ -0.3
PTPN20-222	ENST00000509774	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.19	□□□□□ -0.3
PTPN20-222	ENST00000509774	DZIP3	Q86Y13	1208 aa	Known RBP	13.19	□□□□□ -0.3
PTPN20-222	ENST00000509774	TRMT2A	Q8IZ69	625 aa	Known RBP	13.19	□□□□□ -0.3
PTPN20-222	ENST00000509774	KDM3B	Q7LBC6	1761 aa		13.19	□□□□□ -0.3
PTPN20-222	ENST00000509774	FANCI	Q9NVI1	1328 aa		13.18	□□□□□ -0.3
PTPN20-222	ENST00000509774	TBC1D8	O95759	1140 aa		13.18	□□□□□ -0.3
PTPN20-222	ENST00000509774	EIF2S2	P20042	333 aa	Known RBP	13.18	□□□□□ -0.3
PTPN20-222	ENST00000509774	ARSI	Q5FYB1	569 aa		13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms