RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 SCARF1Q14162 830 aa6.26□□□□□ -1.41
USP53-204ENST00000507906 SF3A1Q15459 793 aaKnown RBP6.26□□□□□ -1.41
USP53-204ENST00000507906 KIAA0319Q5VV43 1072 aa6.26□□□□□ -1.41
USP53-204ENST00000507906 NLRP8Q86W28 1048 aa6.26□□□□□ -1.41
USP53-204ENST00000507906 ZNF654Q8IZM8 581 aa6.26□□□□□ -1.41
USP53-204ENST00000507906 GMLQ99445 158 aa6.26□□□□□ -1.41
USP53-204ENST00000507906 DNAJC2Q99543 621 aaKnown RBP6.26□□□□□ -1.41
USP53-204ENST00000507906 TRIM56Q9BRZ2 755 aaKnown RBP6.26□□□□□ -1.41
USP53-204ENST00000507906 NXF1Q9UBU9 619 aaKnown RBP6.26□□□□□ -1.41
USP53-204ENST00000507906 KCNH4Q9UQ05 1017 aa6.26□□□□□ -1.41
USP53-204ENST00000507906 ERBB4Q15303 1308 aa6.25□□□□□ -1.41
USP53-204ENST00000507906 TRPA1O75762 1119 aa6.25□□□□□ -1.41
USP53-204ENST00000507906 TNP2Q05952 138 aa6.25□□□□□ -1.41
USP53-204ENST00000507906 DBN1Q16643 649 aa6.25□□□□□ -1.41
USP53-204ENST00000507906 TTC39BQ5VTQ0 682 aaPredicted RBP6.25□□□□□ -1.41
USP53-204ENST00000507906 CNTNAP3BQ96NU0 1288 aa6.25□□□□□ -1.41
USP53-204ENST00000507906 CNTNAP3Q9BZ76 1288 aa6.25□□□□□ -1.41
USP53-204ENST00000507906 DCDC2BA2VCK2 349 aa6.24□□□□□ -1.41
USP53-204ENST00000507906 ATXN7O15265 892 aaPredicted RBP6.24□□□□□ -1.41
USP53-204ENST00000507906 EPB42P16452 691 aa6.24□□□□□ -1.41
USP53-204ENST00000507906 DNAJA1P31689 397 aaKnown RBP6.24□□□□□ -1.41
USP53-204ENST00000507906 ITGAEP38570 1179 aa6.24□□□□□ -1.41
USP53-204ENST00000507906 ST13P50502 369 aaKnown RBP6.24□□□□□ -1.41
USP53-204ENST00000507906 DPH6Q7L8W6 267 aa6.24□□□□□ -1.41
USP53-204ENST00000507906 HS2ST1Q7LGA3 356 aa6.24□□□□□ -1.41
USP53-204ENST00000507906 OR13H1Q8NG92 308 aa6.24□□□□□ -1.41
USP53-204ENST00000507906 SLC16A10Q8TF71 515 aa6.24□□□□□ -1.41
USP53-204ENST00000507906 HHIPQ96QV1 700 aa6.24□□□□□ -1.41
USP53-204ENST00000507906 TCF12Q99081 682 aa6.24□□□□□ -1.41
USP53-204ENST00000507906 SLC30A3Q99726 388 aa6.24□□□□□ -1.41
USP53-204ENST00000507906 KBTBD4Q9NVX7 518 aa6.24□□□□□ -1.41
USP53-204ENST00000507906 INPP5FQ9Y2H2 1132 aa6.24□□□□□ -1.41
USP53-204ENST00000507906 BNIP3LO60238 219 aa6.23□□□□□ -1.41
USP53-204ENST00000507906 CCINQ13939 588 aa6.23□□□□□ -1.41
USP53-204ENST00000507906 GIMAP6Q6P9H5 292 aa6.23□□□□□ -1.41
USP53-204ENST00000507906 RIPOR1Q6ZS17 1223 aa6.23□□□□□ -1.41
USP53-204ENST00000507906 RAB44Q7Z6P3 723 aaPredicted RBP6.23□□□□□ -1.41
USP53-204ENST00000507906 MCF2L2Q86YR7 1114 aa6.23□□□□□ -1.41
USP53-204ENST00000507906 PGBD3Q8N328 593 aa6.23□□□□□ -1.41
USP53-204ENST00000507906 EHD4Q9H223 541 aa6.23□□□□□ -1.41
USP53-204ENST00000507906 ABCB6Q9NP58 842 aa6.23□□□□□ -1.41
USP53-204ENST00000507906 C11orf16Q9NQ32 467 aa6.23□□□□□ -1.41
USP53-204ENST00000507906 NDFIP2Q9NV92 336 aa6.23□□□□□ -1.41
USP53-204ENST00000507906 PCDHGC4Q9Y5F7 938 aa6.23□□□□□ -1.41
USP53-204ENST00000507906 SLC35F4A4IF30 521 aa6.22□□□□□ -1.41
USP53-204ENST00000507906 KHNYNO15037 678 aaKnown RBP6.22□□□□□ -1.41
USP53-204ENST00000507906 SMARCA5O60264 1052 aaPredicted RBP6.22□□□□□ -1.41
USP53-204ENST00000507906 FBXO24O75426 580 aa6.22□□□□□ -1.41
USP53-204ENST00000507906 FAM157BP0CG42 384 aa6.22□□□□□ -1.41
USP53-204ENST00000507906 MAPTP10636 758 aaKnown RBP6.22□□□□□ -1.41
USP53-204ENST00000507906 NFKB1P19838 968 aa6.22□□□□□ -1.41
USP53-204ENST00000507906 GTF2F1P35269 517 aaKnown RBP eCLIP6.22□□□□□ -1.41
USP53-204ENST00000507906 GJA8P48165 433 aa6.22□□□□□ -1.41
USP53-204ENST00000507906 FCGRTP55899 365 aa6.22□□□□□ -1.41
USP53-204ENST00000507906 PTSQ03393 145 aa6.22□□□□□ -1.41
USP53-204ENST00000507906 PAK2Q13177 524 aa6.22□□□□□ -1.41
USP53-204ENST00000507906 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.22□□□□□ -1.41
USP53-204ENST00000507906 ZKSCAN3Q9BRR0 538 aa6.22□□□□□ -1.41
USP53-204ENST00000507906 LNPKQ9C0E8 428 aa6.22□□□□□ -1.41
USP53-204ENST00000507906 ADAMTS1Q9UHI8 967 aa6.22□□□□□ -1.41
USP53-204ENST00000507906 TMEM238LA0A1B0GVL6 79 aa6.21□□□□□ -1.42
USP53-204ENST00000507906 METTL12A8MUP2 240 aa6.21□□□□□ -1.42
USP53-204ENST00000507906 ATP2B1P20020 1258 aa6.21□□□□□ -1.42
USP53-204ENST00000507906 GSTT1P30711 240 aa6.21□□□□□ -1.42
USP53-204ENST00000507906 GRIA4P48058 902 aa6.21□□□□□ -1.42
USP53-204ENST00000507906 SPRED3Q2MJR0 410 aa6.21□□□□□ -1.42
USP53-204ENST00000507906 EFHC2Q5JST6 749 aa6.21□□□□□ -1.42
USP53-204ENST00000507906 IRF7Q92985 503 aa6.21□□□□□ -1.42
USP53-204ENST00000507906 PMEPA1Q969W9 287 aa6.21□□□□□ -1.42
USP53-204ENST00000507906 SRCIN1Q9C0H9 1055 aa6.21□□□□□ -1.42
USP53-204ENST00000507906 ZBTB42B2RXF5 422 aa6.2□□□□□ -1.42
USP53-204ENST00000507906 H3BM21 787 aa6.2□□□□□ -1.42
USP53-204ENST00000507906 NFKBIEO00221 500 aa6.2□□□□□ -1.42
USP53-204ENST00000507906 MAN1A2O60476 641 aa6.2□□□□□ -1.42
USP53-204ENST00000507906 FGRP09769 529 aa6.2□□□□□ -1.42
USP53-204ENST00000507906 RARAP10276 462 aa6.2□□□□□ -1.42
USP53-204ENST00000507906 CD33P20138 364 aa6.2□□□□□ -1.42
USP53-204ENST00000507906 ARID5AQ03989 594 aa6.2□□□□□ -1.42
USP53-204ENST00000507906 SPEM2Q0P670 501 aa6.2□□□□□ -1.42
USP53-204ENST00000507906 PRPF40BQ6NWY9 871 aaKnown RBP6.2□□□□□ -1.42
USP53-204ENST00000507906 CEP120Q8N960 986 aa6.2□□□□□ -1.42
USP53-204ENST00000507906 ABHD17AQ96GS6 310 aa6.2□□□□□ -1.42
USP53-204ENST00000507906 OXCT2Q9BYC2 517 aaPredicted RBP6.2□□□□□ -1.42
USP53-204ENST00000507906 NUCKS1Q9H1E3 243 aaKnown RBP6.2□□□□□ -1.42
USP53-204ENST00000507906 LIN7BQ9HAP6 207 aa6.2□□□□□ -1.42
USP53-204ENST00000507906 TLR7Q9NYK1 1049 aaKnown RBP6.2□□□□□ -1.42
USP53-204ENST00000507906 TTF2Q9UNY4 1162 aaKnown RBP6.2□□□□□ -1.42
USP53-204ENST00000507906 MINDY4BA8MYZ0 360 aa6.19□□□□□ -1.42
USP53-204ENST00000507906 KIF4AO95239 1232 aa6.19□□□□□ -1.42
USP53-204ENST00000507906 EDN3P14138 238 aa6.19□□□□□ -1.42
USP53-204ENST00000507906 ATF4P18848 351 aaPredicted RBP6.19□□□□□ -1.42
USP53-204ENST00000507906 LORP23490 312 aaPredicted RBP6.19□□□□□ -1.42
USP53-204ENST00000507906 RBL2Q08999 1139 aa6.19□□□□□ -1.42
USP53-204ENST00000507906 MAP3K11Q16584 847 aa6.19□□□□□ -1.42
USP53-204ENST00000507906 CCDC144BQ3MJ40 725 aa6.19□□□□□ -1.42
USP53-204ENST00000507906 ADAMTSL4Q6UY14 1074 aa6.19□□□□□ -1.42
USP53-204ENST00000507906 CCNJLQ8IV13 435 aa6.19□□□□□ -1.42
USP53-204ENST00000507906 CCDC155Q8N6L0 562 aa6.19□□□□□ -1.42
USP53-204ENST00000507906 ZSCAN1Q8NBB4 408 aa6.19□□□□□ -1.42
USP53-204ENST00000507906 OSMRQ99650 979 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms