RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 SULF1Q8IWU6 871 aa27.11■■□□□ 1.93
SQSTM1-210ENST00000506042 CWC25Q9NXE8 425 aaPredicted RBP27.11■■□□□ 1.93
SQSTM1-210ENST00000506042 PDE8AO60658 829 aa27.1■■□□□ 1.93
SQSTM1-210ENST00000506042 USP48Q86UV5 1035 aa27.1■■□□□ 1.93
SQSTM1-210ENST00000506042 TBC1D16Q8TBP0 767 aa27.1■■□□□ 1.93
SQSTM1-210ENST00000506042 PODXL2Q9NZ53 605 aa27.1■■□□□ 1.93
SQSTM1-210ENST00000506042 ZBTB12Q9Y330 459 aaPredicted RBP27.1■■□□□ 1.93
SQSTM1-210ENST00000506042 AOC2O75106 756 aa27.09■■□□□ 1.93
SQSTM1-210ENST00000506042 UFL1O94874 794 aa27.09■■□□□ 1.93
SQSTM1-210ENST00000506042 PCCAP05165 728 aaPredicted RBP27.09■■□□□ 1.93
SQSTM1-210ENST00000506042 HIRAP54198 1017 aaPredicted RBP27.09■■□□□ 1.93
SQSTM1-210ENST00000506042 NEXNQ0ZGT2 675 aa27.09■■□□□ 1.93
SQSTM1-210ENST00000506042 CCDC102AQ96A19 550 aa27.09■■□□□ 1.93
SQSTM1-210ENST00000506042 MYD88Q99836 296 aa27.09■■□□□ 1.93
SQSTM1-210ENST00000506042 POLLQ9UGP5 575 aa27.09■■□□□ 1.93
SQSTM1-210ENST00000506042 TBC1D10BQ4KMP7 808 aaPredicted RBP27.08■■□□□ 1.93
SQSTM1-210ENST00000506042 ANKRD18AQ8IVF6 992 aa27.08■■□□□ 1.93
SQSTM1-210ENST00000506042 ZNF428Q96B54 188 aa27.08■■□□□ 1.93
SQSTM1-210ENST00000506042 CDC5LQ99459 802 aaKnown RBP27.08■■□□□ 1.93
SQSTM1-210ENST00000506042 STK31Q9BXU1 1019 aa27.08■■□□□ 1.93
SQSTM1-210ENST00000506042 DOK7Q18PE1 504 aa27.07■■□□□ 1.92
SQSTM1-210ENST00000506042 KIF4BQ2VIQ3 1234 aa27.07■■□□□ 1.92
SQSTM1-210ENST00000506042 SAMD7Q7Z3H4 446 aa27.07■■□□□ 1.92
SQSTM1-210ENST00000506042 PRKRIP1Q9H875 184 aaPredicted RBP27.07■■□□□ 1.92
SQSTM1-210ENST00000506042 GBA2Q9HCG7 927 aaPredicted RBP27.07■■□□□ 1.92
SQSTM1-210ENST00000506042 APAF1O14727 1248 aa27.06■■□□□ 1.92
SQSTM1-210ENST00000506042 ZNF853P0CG23 659 aa27.06■■□□□ 1.92
SQSTM1-210ENST00000506042 RBM26Q5T8P6 1007 aaKnown RBP27.06■■□□□ 1.92
SQSTM1-210ENST00000506042 XDHP47989 1333 aa27.06■■□□□ 1.92
SQSTM1-210ENST00000506042 RGMBQ6NW40 437 aa27.05■■□□□ 1.92
SQSTM1-210ENST00000506042 AGBL3Q8NEM8 1001 aa27.05■■□□□ 1.92
SQSTM1-210ENST00000506042 CCDC85CA6NKD9 419 aa27.04■■□□□ 1.92
SQSTM1-210ENST00000506042 ELL2O00472 640 aaPredicted RBP27.04■■□□□ 1.92
SQSTM1-210ENST00000506042 METTL22Q9BUU2 404 aaPredicted RBP27.04■■□□□ 1.92
SQSTM1-210ENST00000506042 VIL1P09327 827 aaKnown RBP27.03■■□□□ 1.92
SQSTM1-210ENST00000506042 ATP2B4P23634 1241 aa27.03■■□□□ 1.92
SQSTM1-210ENST00000506042 REM2Q8IYK8 340 aaPredicted RBP27.03■■□□□ 1.92
SQSTM1-210ENST00000506042 PHAXQ9H814 394 aaKnown RBP27.03■■□□□ 1.92
SQSTM1-210ENST00000506042 PODNQ7Z5L7 613 aa27.01■■□□□ 1.91
SQSTM1-210ENST00000506042 ZNF609O15014 1411 aa27■■□□□ 1.91
SQSTM1-210ENST00000506042 ZNF157P51786 506 aaPredicted RBP27■■□□□ 1.91
SQSTM1-210ENST00000506042 SAGE1Q9NXZ1 904 aa27■■□□□ 1.91
SQSTM1-210ENST00000506042 GGA3Q9NZ52 723 aa27■■□□□ 1.91
SQSTM1-210ENST00000506042 RSBN1LQ6PCB5 846 aaPredicted RBP26.99■■□□□ 1.91
SQSTM1-210ENST00000506042 OGFOD1Q8N543 542 aa26.99■■□□□ 1.91
SQSTM1-210ENST00000506042 SEC31BQ9NQW1 1179 aa26.99■■□□□ 1.91
SQSTM1-210ENST00000506042 TSKSQ9UJT2 592 aa26.99■■□□□ 1.91
SQSTM1-210ENST00000506042 RTL9Q8NET4 1388 aa26.98■■□□□ 1.91
SQSTM1-210ENST00000506042 SHTN1A0MZ66 631 aa26.98■■□□□ 1.91
SQSTM1-210ENST00000506042 MMP14P50281 582 aa26.98■■□□□ 1.91
SQSTM1-210ENST00000506042 FKBP1BP68106 108 aa26.98■■□□□ 1.91
SQSTM1-210ENST00000506042 MLLT1Q03111 559 aaPredicted RBP26.98■■□□□ 1.91
SQSTM1-210ENST00000506042 KSR2Q6VAB6 950 aa26.98■■□□□ 1.91
SQSTM1-210ENST00000506042 MAP3K2Q9Y2U5 619 aa26.98■■□□□ 1.91
SQSTM1-210ENST00000506042 USP17L3A6NCW0 530 aa26.97■■□□□ 1.91
SQSTM1-210ENST00000506042 USP17L4A6NCW7 530 aa26.97■■□□□ 1.91
SQSTM1-210ENST00000506042 USP17L8P0C7I0 530 aa26.97■■□□□ 1.91
SQSTM1-210ENST00000506042 USP17L1Q7RTZ2 530 aa26.97■■□□□ 1.91
SQSTM1-210ENST00000506042 MYO3BQ8WXR4 1341 aa26.96■■□□□ 1.91
SQSTM1-210ENST00000506042 CTSWP56202 376 aa26.96■■□□□ 1.91
SQSTM1-210ENST00000506042 PITPNM2Q9BZ72 1349 aa26.95■■□□□ 1.91
SQSTM1-210ENST00000506042 ADM5C9JUS6 153 aa26.95■■□□□ 1.9
SQSTM1-210ENST00000506042 NF2P35240 595 aa26.95■■□□□ 1.9
SQSTM1-210ENST00000506042 DGKZQ13574 1117 aa26.95■■□□□ 1.9
SQSTM1-210ENST00000506042 IGHMBP2P38935 993 aaKnown RBP26.94■■□□□ 1.9
SQSTM1-210ENST00000506042 ZNF280AP59817 542 aaPredicted RBP26.94■■□□□ 1.9
SQSTM1-210ENST00000506042 C8orf58Q8NAV2 365 aa26.94■■□□□ 1.9
SQSTM1-210ENST00000506042 CCDC85AQ96PX6 553 aaPredicted RBP26.94■■□□□ 1.9
SQSTM1-210ENST00000506042 MYH3P11055 1940 aa26.93■■□□□ 1.9
SQSTM1-210ENST00000506042 FAM161AQ3B820 660 aa26.93■■□□□ 1.9
SQSTM1-210ENST00000506042 MCOLN1Q9GZU1 580 aa26.93■■□□□ 1.9
SQSTM1-210ENST00000506042 MYH16Q9H6N6 1097 aa26.93■■□□□ 1.9
SQSTM1-210ENST00000506042 MYOZ2Q9NPC6 264 aa26.93■■□□□ 1.9
SQSTM1-210ENST00000506042 KCNQ5Q9NR82 932 aa26.93■■□□□ 1.9
SQSTM1-210ENST00000506042 BSDC1Q9NW68 430 aaPredicted RBP26.93■■□□□ 1.9
SQSTM1-210ENST00000506042 MED23Q9ULK4 1368 aa26.93■■□□□ 1.9
SQSTM1-210ENST00000506042 PSME4Q14997 1843 aa26.93■■□□□ 1.9
SQSTM1-210ENST00000506042 PI4KAP2A4QPH2 592 aa26.92■■□□□ 1.9
SQSTM1-210ENST00000506042 SCARF1Q14162 830 aa26.92■■□□□ 1.9
SQSTM1-210ENST00000506042 ANGEL2Q5VTE6 544 aaKnown RBP26.92■■□□□ 1.9
SQSTM1-210ENST00000506042 PI4KAP1Q8N8J0 262 aa26.92■■□□□ 1.9
SQSTM1-210ENST00000506042 CDCA5Q96FF9 252 aa26.92■■□□□ 1.9
SQSTM1-210ENST00000506042 POLR2AP24928 1970 aaKnown RBP26.91■■□□□ 1.9
SQSTM1-210ENST00000506042 AKAP11Q9UKA4 1901 aa26.91■■□□□ 1.9
SQSTM1-210ENST00000506042 EGFRP00533 1210 aa26.91■■□□□ 1.9
SQSTM1-210ENST00000506042 KIF23Q02241 960 aaPredicted RBP26.91■■□□□ 1.9
SQSTM1-210ENST00000506042 ANKRD2Q9GZV1 360 aa26.91■■□□□ 1.9
SQSTM1-210ENST00000506042 CCDC27Q2M243 656 aa26.9■■□□□ 1.9
SQSTM1-210ENST00000506042 HDAC9Q9UKV0 1011 aa26.9■■□□□ 1.9
SQSTM1-210ENST00000506042 LEMD3Q9Y2U8 911 aa26.9■■□□□ 1.9
SQSTM1-210ENST00000506042 SLC10A3P09131 477 aa26.89■■□□□ 1.9
SQSTM1-210ENST00000506042 TWISTNBQ3B726 338 aaPredicted RBP26.89■■□□□ 1.9
SQSTM1-210ENST00000506042 FBXW7Q969H0 707 aa26.89■■□□□ 1.9
SQSTM1-210ENST00000506042 MPHOSPH8Q99549 860 aa26.89■■□□□ 1.9
SQSTM1-210ENST00000506042 COA1Q9GZY4 146 aa26.89■■□□□ 1.9
SQSTM1-210ENST00000506042 SCN9AQ15858 1988 aa26.89■■□□□ 1.89
SQSTM1-210ENST00000506042 FAM155AB1AL88 458 aaPredicted RBP26.88■■□□□ 1.89
SQSTM1-210ENST00000506042 KCNJ4P48050 445 aa26.88■■□□□ 1.89
SQSTM1-210ENST00000506042 TTLL11Q8NHH1 800 aa26.88■■□□□ 1.89
SQSTM1-210ENST00000506042 PAPPA2Q9BXP8 1791 aa26.88■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms