RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-222	ENST00000506018	ITGBL1	O95965	494 aa	Predicted RBP	13.29	□□□□□ -0.28
NR1I3-222	ENST00000506018	CTSW	P56202	376 aa		13.29	□□□□□ -0.28
NR1I3-222	ENST00000506018	GPSM2	P81274	684 aa		13.29	□□□□□ -0.28
NR1I3-222	ENST00000506018	EXOSC9	Q06265	439 aa	Known RBP	13.29	□□□□□ -0.28
NR1I3-222	ENST00000506018	MAP1S	Q66K74	1059 aa	Predicted RBP	13.29	□□□□□ -0.28
NR1I3-222	ENST00000506018	PODXL2	Q9NZ53	605 aa		13.29	□□□□□ -0.28
NR1I3-222	ENST00000506018	SPEF2	Q9C093	1822 aa		13.29	□□□□□ -0.28
NR1I3-222	ENST00000506018		H7C1D1	291 aa		13.28	□□□□□ -0.28
NR1I3-222	ENST00000506018	RIMBP2	O15034	1052 aa		13.28	□□□□□ -0.28
NR1I3-222	ENST00000506018	VAMP4	O75379	141 aa		13.28	□□□□□ -0.28
NR1I3-222	ENST00000506018	IGKV5-2	P06315	115 aa		13.28	□□□□□ -0.28
NR1I3-222	ENST00000506018	GMPS	P49915	693 aa	Predicted RBP	13.28	□□□□□ -0.28
NR1I3-222	ENST00000506018	TBC1D16	Q8TBP0	767 aa		13.28	□□□□□ -0.28
NR1I3-222	ENST00000506018	DNAAF4	Q8WXU2	420 aa		13.28	□□□□□ -0.28
NR1I3-222	ENST00000506018	JARID2	Q92833	1246 aa	Predicted RBP	13.28	□□□□□ -0.28
NR1I3-222	ENST00000506018	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.28	□□□□□ -0.28
NR1I3-222	ENST00000506018	SEC31B	Q9NQW1	1179 aa		13.28	□□□□□ -0.28
NR1I3-222	ENST00000506018	GGA1	Q9UJY5	639 aa		13.28	□□□□□ -0.28
NR1I3-222	ENST00000506018	UFL1	O94874	794 aa		13.27	□□□□□ -0.29
NR1I3-222	ENST00000506018	CWF19L2	Q2TBE0	894 aa	Known RBP	13.27	□□□□□ -0.29
NR1I3-222	ENST00000506018	G2E3	Q7L622	706 aa		13.27	□□□□□ -0.29
NR1I3-222	ENST00000506018	UBE3B	Q7Z3V4	1068 aa		13.27	□□□□□ -0.29
NR1I3-222	ENST00000506018	DBNDD1	Q9H9R9	158 aa		13.27	□□□□□ -0.29
NR1I3-222	ENST00000506018	POLL	Q9UGP5	575 aa		13.27	□□□□□ -0.29
NR1I3-222	ENST00000506018	MKRN1	Q9UHC7	482 aa	Known RBP	13.27	□□□□□ -0.29
NR1I3-222	ENST00000506018	XDH	P47989	1333 aa		13.27	□□□□□ -0.29
NR1I3-222	ENST00000506018	ECE2	O60344	883 aa		13.26	□□□□□ -0.29
NR1I3-222	ENST00000506018	RPS12	P25398	132 aa	Known RBP	13.26	□□□□□ -0.29
NR1I3-222	ENST00000506018	IGHMBP2	P38935	993 aa	Known RBP	13.26	□□□□□ -0.29
NR1I3-222	ENST00000506018	LINS1	Q8NG48	757 aa		13.26	□□□□□ -0.29
NR1I3-222	ENST00000506018	DPF2	Q92785	391 aa		13.26	□□□□□ -0.29
NR1I3-222	ENST00000506018	CNOT7	Q9UIV1	285 aa	Known RBP	13.26	□□□□□ -0.29
NR1I3-222	ENST00000506018	ABT1	Q9ULW3	272 aa	Known RBP	13.26	□□□□□ -0.29
NR1I3-222	ENST00000506018	CNTNAP1	P78357	1384 aa		13.26	□□□□□ -0.29
NR1I3-222	ENST00000506018	RTL9	Q8NET4	1388 aa		13.26	□□□□□ -0.29
NR1I3-222	ENST00000506018	YDJC	A8MPS7	323 aa		13.25	□□□□□ -0.29
NR1I3-222	ENST00000506018		H7C1W4	665 aa		13.25	□□□□□ -0.29
NR1I3-222	ENST00000506018	ATP2B4	P23634	1241 aa		13.25	□□□□□ -0.29
NR1I3-222	ENST00000506018	GCKR	Q14397	625 aa		13.25	□□□□□ -0.29
NR1I3-222	ENST00000506018	TTLL11	Q8NHH1	800 aa		13.25	□□□□□ -0.29
NR1I3-222	ENST00000506018	ZC3H15	Q8WU90	426 aa	Known RBP	13.25	□□□□□ -0.29
NR1I3-222	ENST00000506018	PSME4	Q14997	1843 aa		13.25	□□□□□ -0.29
NR1I3-222	ENST00000506018	PSMD14	O00487	310 aa		13.24	□□□□□ -0.29
NR1I3-222	ENST00000506018	COL4A1	P02462	1669 aa		13.24	□□□□□ -0.29
NR1I3-222	ENST00000506018	DOK7	Q18PE1	504 aa		13.24	□□□□□ -0.29
NR1I3-222	ENST00000506018	IFFO2	Q5TF58	517 aa		13.24	□□□□□ -0.29
NR1I3-222	ENST00000506018	PLA2G12B	Q9BX93	195 aa		13.24	□□□□□ -0.29
NR1I3-222	ENST00000506018	BSDC1	Q9NW68	430 aa	Predicted RBP	13.24	□□□□□ -0.29
NR1I3-222	ENST00000506018	CCER2	I3L3R5	266 aa		13.23	□□□□□ -0.29
NR1I3-222	ENST00000506018	HSPA1A	P0DMV8	641 aa	Known RBP	13.23	□□□□□ -0.29
NR1I3-222	ENST00000506018	HSPA1B	P0DMV9	641 aa	Known RBP	13.23	□□□□□ -0.29
NR1I3-222	ENST00000506018	DEFB115	Q30KQ5	88 aa		13.23	□□□□□ -0.29
NR1I3-222	ENST00000506018	MICALL2	Q8IY33	904 aa		13.23	□□□□□ -0.29
NR1I3-222	ENST00000506018	MPHOSPH8	Q99549	860 aa		13.23	□□□□□ -0.29
NR1I3-222	ENST00000506018	GREM2	Q9H772	168 aa		13.23	□□□□□ -0.29
NR1I3-222	ENST00000506018	POLR2A	P24928	1970 aa	Known RBP	13.22	□□□□□ -0.29
NR1I3-222	ENST00000506018	SCN9A	Q15858	1988 aa		13.22	□□□□□ -0.29
NR1I3-222	ENST00000506018	RASSF10	A6NK89	507 aa		13.22	□□□□□ -0.29
NR1I3-222	ENST00000506018	CDC37L1	Q7L3B6	337 aa		13.22	□□□□□ -0.29
NR1I3-222	ENST00000506018	MIER1	Q8N108	512 aa		13.22	□□□□□ -0.29
NR1I3-222	ENST00000506018	AIDA	Q96BJ3	306 aa		13.22	□□□□□ -0.29
NR1I3-222	ENST00000506018	ITGA6	P23229	1130 aa		13.21	□□□□□ -0.29
NR1I3-222	ENST00000506018	ECE1	P42892	770 aa		13.21	□□□□□ -0.29
NR1I3-222	ENST00000506018	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.21	□□□□□ -0.29
NR1I3-222	ENST00000506018	PODN	Q7Z5L7	613 aa		13.21	□□□□□ -0.29
NR1I3-222	ENST00000506018	GPR101	Q96P66	508 aa	Predicted RBP	13.21	□□□□□ -0.29
NR1I3-222	ENST00000506018	ANKRD2	Q9GZV1	360 aa		13.21	□□□□□ -0.29
NR1I3-222	ENST00000506018	MINPP1	Q9UNW1	487 aa		13.21	□□□□□ -0.29
NR1I3-222	ENST00000506018	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.21	□□□□□ -0.29
NR1I3-222	ENST00000506018	PCNT	O95613	3336 aa		13.21	□□□□□ -0.29
NR1I3-222	ENST00000506018	MED23	Q9ULK4	1368 aa		13.21	□□□□□ -0.3
NR1I3-222	ENST00000506018	ANKRD18B	A2A2Z9	1011 aa		13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018		E9PSI1	815 aa		13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	VIL1	P09327	827 aa	Known RBP	13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	AGBL3	Q8NEM8	1001 aa		13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	PGAP2	Q9UHJ9	254 aa		13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	LEMD3	Q9Y2U8	911 aa		13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	CHMP3	Q9Y3E7	222 aa		13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018		F6X3S4	739 aa		13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	CELF2	O95319	508 aa	Known RBP	13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	CSF1R	P07333	972 aa		13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	KCNJ4	P48050	445 aa		13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	VEGFB	P49765	207 aa		13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	CCT4	P50991	539 aa	Known RBP	13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	IFIT5	Q13325	482 aa	Known RBP	13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	FAM161A	Q3B820	660 aa		13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	BEND3	Q5T5X7	828 aa		13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	TRPM4	Q8TD43	1214 aa		13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	DCPS	Q96C86	337 aa	Known RBP	13.2	□□□□□ -0.3
NR1I3-222	ENST00000506018	ZNF521	Q96K83	1311 aa		13.19	□□□□□ -0.3
NR1I3-222	ENST00000506018	USP17L3	A6NCW0	530 aa		13.19	□□□□□ -0.3
NR1I3-222	ENST00000506018	USP17L4	A6NCW7	530 aa		13.19	□□□□□ -0.3
NR1I3-222	ENST00000506018	GRM8	O00222	908 aa		13.19	□□□□□ -0.3
NR1I3-222	ENST00000506018	TRAF5	O00463	557 aa		13.19	□□□□□ -0.3
NR1I3-222	ENST00000506018	ALDH1L1	O75891	902 aa		13.19	□□□□□ -0.3
NR1I3-222	ENST00000506018	CASP7	P55210	303 aa		13.19	□□□□□ -0.3
NR1I3-222	ENST00000506018	MAP2K1	Q02750	393 aa	Predicted RBP	13.19	□□□□□ -0.3
NR1I3-222	ENST00000506018	KIF4B	Q2VIQ3	1234 aa		13.19	□□□□□ -0.3
NR1I3-222	ENST00000506018	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.19	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms