RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 SMARCC2Q8TAQ2 1214 aa14□□□□□ -0.17
UBE3D-206ENST00000505226 CTNNA3Q9UI47 895 aa14□□□□□ -0.17
UBE3D-206ENST00000505226 HDAC5Q9UQL6 1122 aa14□□□□□ -0.17
UBE3D-206ENST00000505226 H3BQV1 296 aa14□□□□□ -0.17
UBE3D-206ENST00000505226 HSP90B1P14625 803 aaKnown RBP14□□□□□ -0.17
UBE3D-206ENST00000505226 TPD52L1Q16890 204 aaPredicted RBP14□□□□□ -0.17
UBE3D-206ENST00000505226 TNNI3KQ59H18 835 aa14□□□□□ -0.17
UBE3D-206ENST00000505226 IFFO2Q5TF58 517 aa14□□□□□ -0.17
UBE3D-206ENST00000505226 MYD88Q99836 296 aa14□□□□□ -0.17
UBE3D-206ENST00000505226 FPGT-TNNI3KV9GXZ4 949 aa14□□□□□ -0.17
UBE3D-206ENST00000505226 CCAR1Q8IX12 1150 aaKnown RBP13.99□□□□□ -0.17
UBE3D-206ENST00000505226 DHX40Q8IX18 779 aaKnown RBP13.99□□□□□ -0.17
UBE3D-206ENST00000505226 NSUN7Q8NE18 718 aaKnown RBP13.99□□□□□ -0.17
UBE3D-206ENST00000505226 XAGE3Q8WTP9 111 aa13.99□□□□□ -0.17
UBE3D-206ENST00000505226 DNAJC2Q99543 621 aaKnown RBP13.99□□□□□ -0.17
UBE3D-206ENST00000505226 DBNDD2Q9BQY9 259 aa13.99□□□□□ -0.17
UBE3D-206ENST00000505226 CDC25BP30305 580 aa13.99□□□□□ -0.17
UBE3D-206ENST00000505226 DDX46Q7L014 1031 aaKnown RBP13.99□□□□□ -0.17
UBE3D-206ENST00000505226 COPS6Q7L5N1 327 aa13.99□□□□□ -0.17
UBE3D-206ENST00000505226 ILDR1Q86SU0 546 aaPredicted RBP13.99□□□□□ -0.17
UBE3D-206ENST00000505226 USP28Q96RU2 1077 aa13.99□□□□□ -0.17
UBE3D-206ENST00000505226 SIPA1L3O60292 1781 aaPredicted RBP13.99□□□□□ -0.17
UBE3D-206ENST00000505226 DDX58O95786 925 aaKnown RBP13.98□□□□□ -0.17
UBE3D-206ENST00000505226 PSME1Q06323 249 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 SARM1Q6SZW1 724 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 THEMISQ8N1K5 641 aaPredicted RBP13.98□□□□□ -0.17
UBE3D-206ENST00000505226 GTPBP4Q9BZE4 634 aaKnown RBP13.98□□□□□ -0.17
UBE3D-206ENST00000505226 RCOR1Q9UKL0 485 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 CCDC9Q9Y3X0 531 aaKnown RBP13.98□□□□□ -0.17
UBE3D-206ENST00000505226 GCP02774 474 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 KRT32Q14532 448 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 ESCO1Q5FWF5 840 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 ARHGEF25Q86VW2 580 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 ENGASEQ8NFI3 743 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 ZNF592Q92610 1267 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 ZSCAN16Q9H4T2 348 aaPredicted RBP13.98□□□□□ -0.17
UBE3D-206ENST00000505226 NCOA5Q9HCD5 579 aaKnown RBP13.98□□□□□ -0.17
UBE3D-206ENST00000505226 COPRSQ9NQ92 184 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 NCAPD2Q15021 1401 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 APOBRQ0VD83 1088 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 ANKRD24Q8TF21 1146 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 CFAP45Q9UL16 551 aa13.98□□□□□ -0.17
UBE3D-206ENST00000505226 PFKFB2O60825 505 aa13.97□□□□□ -0.17
UBE3D-206ENST00000505226 RBM6P78332 1123 aaKnown RBP13.97□□□□□ -0.17
UBE3D-206ENST00000505226 CEP135Q66GS9 1140 aa13.97□□□□□ -0.17
UBE3D-206ENST00000505226 LRP10Q7Z4F1 713 aa13.97□□□□□ -0.17
UBE3D-206ENST00000505226 C5P01031 1676 aa13.97□□□□□ -0.17
UBE3D-206ENST00000505226 LAMA4Q16363 1823 aa13.97□□□□□ -0.17
UBE3D-206ENST00000505226 CCT2P78371 535 aaKnown RBP13.97□□□□□ -0.17
UBE3D-206ENST00000505226 CCZ1BP86790 482 aa13.97□□□□□ -0.17
UBE3D-206ENST00000505226 CCZ1P86791 482 aaPredicted RBP13.97□□□□□ -0.17
UBE3D-206ENST00000505226 MCMDC2Q4G0Z9 681 aa13.97□□□□□ -0.17
UBE3D-206ENST00000505226 KCNH5Q8NCM2 988 aa13.97□□□□□ -0.17
UBE3D-206ENST00000505226 CCDC112Q8NEF3 446 aa13.97□□□□□ -0.17
UBE3D-206ENST00000505226 MRFAP1L1Q96HT8 127 aa13.97□□□□□ -0.17
UBE3D-206ENST00000505226 PAXBP1Q9Y5B6 917 aa13.97□□□□□ -0.17
UBE3D-206ENST00000505226 GUCY1B3Q02153 619 aa13.96□□□□□ -0.17
UBE3D-206ENST00000505226 SYCP1Q15431 976 aa13.96□□□□□ -0.17
UBE3D-206ENST00000505226 ZNF790Q6PG37 636 aa13.96□□□□□ -0.17
UBE3D-206ENST00000505226 NYAP1Q6ZVC0 841 aa13.96□□□□□ -0.17
UBE3D-206ENST00000505226 FBXW7Q969H0 707 aa13.96□□□□□ -0.17
UBE3D-206ENST00000505226 METTL22Q9BUU2 404 aaPredicted RBP13.96□□□□□ -0.17
UBE3D-206ENST00000505226 U3KPZ7 1027 aaPredicted RBP13.96□□□□□ -0.17
UBE3D-206ENST00000505226 SKILP12757 684 aa13.96□□□□□ -0.17
UBE3D-206ENST00000505226 OVOS2A0A0G2JMS6 1433 aa13.96□□□□□ -0.18
UBE3D-206ENST00000505226 PTPDC1A2A3K4 754 aa13.96□□□□□ -0.18
UBE3D-206ENST00000505226 GOLGA6L19H0YKK7 550 aa13.96□□□□□ -0.18
UBE3D-206ENST00000505226 CHST3Q7LGC8 479 aa13.96□□□□□ -0.18
UBE3D-206ENST00000505226 FILIP1Q7Z7B0 1213 aa13.96□□□□□ -0.18
UBE3D-206ENST00000505226 FEZ1Q99689 392 aa13.96□□□□□ -0.18
UBE3D-206ENST00000505226 HAUS7Q99871 368 aa13.96□□□□□ -0.18
UBE3D-206ENST00000505226 TRMT1Q9NXH9 659 aaKnown RBP13.96□□□□□ -0.18
UBE3D-206ENST00000505226 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.96□□□□□ -0.18
UBE3D-206ENST00000505226 V9GYY5 206 aaPredicted RBP13.96□□□□□ -0.18
UBE3D-206ENST00000505226 MYH15Q9Y2K3 1946 aa13.96□□□□□ -0.18
UBE3D-206ENST00000505226 PHRF1Q9P1Y6 1649 aaKnown RBP13.95□□□□□ -0.18
UBE3D-206ENST00000505226 STX1AQ16623 288 aa13.95□□□□□ -0.18
UBE3D-206ENST00000505226 EXOSC10Q01780 885 aaKnown RBP13.95□□□□□ -0.18
UBE3D-206ENST00000505226 UBE3BQ7Z3V4 1068 aa13.95□□□□□ -0.18
UBE3D-206ENST00000505226 NBPF11Q86T75 865 aa13.95□□□□□ -0.18
UBE3D-206ENST00000505226 OGFRQ9NZT2 677 aa13.95□□□□□ -0.18
UBE3D-206ENST00000505226 ZNF215Q9UL58 517 aaPredicted RBP13.95□□□□□ -0.18
UBE3D-206ENST00000505226 CCDC69A6NI79 296 aa13.95□□□□□ -0.18
UBE3D-206ENST00000505226 CAVIN2O95810 425 aa13.95□□□□□ -0.18
UBE3D-206ENST00000505226 NEXNQ0ZGT2 675 aa13.95□□□□□ -0.18
UBE3D-206ENST00000505226 NAA16Q6N069 864 aaPredicted RBP13.95□□□□□ -0.18
UBE3D-206ENST00000505226 DHX32Q7L7V1 743 aaKnown RBP13.95□□□□□ -0.18
UBE3D-206ENST00000505226 NFATC2IPQ8NCF5 419 aa13.95□□□□□ -0.18
UBE3D-206ENST00000505226 DDX41Q9UJV9 622 aaKnown RBP13.95□□□□□ -0.18
UBE3D-206ENST00000505226 SALL1Q9NSC2 1324 aa13.94□□□□□ -0.18
UBE3D-206ENST00000505226 ATP5J2-PTCD1G3V325 749 aa13.94□□□□□ -0.18
UBE3D-206ENST00000505226 PTCD1O75127 700 aaKnown RBP13.94□□□□□ -0.18
UBE3D-206ENST00000505226 ERBB3P21860 1342 aa13.94□□□□□ -0.18
UBE3D-206ENST00000505226 ZNF496Q96IT1 587 aaPredicted RBP13.94□□□□□ -0.18
UBE3D-206ENST00000505226 ORAI2Q96SN7 254 aa13.94□□□□□ -0.18
UBE3D-206ENST00000505226 LLPHQ9BRT6 129 aaKnown RBP13.94□□□□□ -0.18
UBE3D-206ENST00000505226 FGD1P98174 961 aa13.93□□□□□ -0.18
UBE3D-206ENST00000505226 RABL6Q3YEC7 729 aaPredicted RBP13.93□□□□□ -0.18
UBE3D-206ENST00000505226 ANKRD13DQ6ZTN6 518 aa13.93□□□□□ -0.18
UBE3D-206ENST00000505226 AOPEPQ8N6M6 819 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms