RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-231	ENST00000498751	LOC102724428	A0A0B4J2F2	783 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	C2orf72	A6NCS6	295 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	ATP5J2-PTCD1	G3V325	749 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	EYA2	O00167	538 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	KIF3C	O14782	793 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	ADAMTS2	O95450	1211 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	MCC	P23508	829 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	PIP4K2A	P48426	406 aa	Predicted RBP	9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	SIK1	P57059	783 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	OS9	Q13438	667 aa	Predicted RBP	9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	PARP10	Q53GL7	1025 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	GPR153	Q6NV75	609 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	INTS5	Q6P9B9	1019 aa	Known RBP	9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	CLEC4G	Q6UXB4	293 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	AACS	Q86V21	672 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	HS6ST3	Q8IZP7	471 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	ZNF512B	Q96KM6	892 aa	Predicted RBP	9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	ZBTB3	Q9H5J0	574 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	CCDC87	Q9NVE4	849 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	ZBTB1	Q9Y2K1	713 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	ZNF609	O15014	1411 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	CNTNAP4	Q9C0A0	1308 aa		9.3	□□□□□ -0.92
SYNE1-231	ENST00000498751	LAMB2	P55268	1798 aa		9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	AK9	Q5TCS8	1911 aa		9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	MED23	Q9ULK4	1368 aa		9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	TRIM6-TRIM34	B2RNG4	842 aa		9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	HSP90B1	P14625	803 aa	Known RBP	9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	SLC4A3	P48751	1232 aa		9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	NFKBIB	Q15653	356 aa		9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	RC3H1	Q5TC82	1133 aa	Known RBP	9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	CERK	Q8TCT0	537 aa		9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	TM6SF1	Q9BZW5	370 aa		9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	LSG1	Q9H089	658 aa	Known RBP	9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	ZSWIM6	Q9HCJ5	1215 aa		9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	ATRN	O75882	1429 aa		9.29	□□□□□ -0.92
SYNE1-231	ENST00000498751	NUP98	P52948	1817 aa		9.28	□□□□□ -0.92
SYNE1-231	ENST00000498751	TSGA10IP	Q3SY00	556 aa		9.28	□□□□□ -0.92
SYNE1-231	ENST00000498751	TSHZ3	Q63HK5	1081 aa		9.28	□□□□□ -0.92
SYNE1-231	ENST00000498751	DZIP3	Q86Y13	1208 aa	Known RBP	9.28	□□□□□ -0.92
SYNE1-231	ENST00000498751	RILPL2	Q969X0	211 aa		9.28	□□□□□ -0.92
SYNE1-231	ENST00000498751	HAUS7	Q99871	368 aa		9.28	□□□□□ -0.92
SYNE1-231	ENST00000498751	CWC22	Q9HCG8	908 aa	Known RBP	9.28	□□□□□ -0.92
SYNE1-231	ENST00000498751	DBNL	Q9UJU6	430 aa	Known RBP	9.28	□□□□□ -0.92
SYNE1-231	ENST00000498751	SCN7A	Q01118	1682 aa		9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	PDE8A	O60658	829 aa		9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	CD2BP2	O95400	341 aa	Known RBP	9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	CRKL	P46109	303 aa	Known RBP	9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	TFCP2	Q12800	502 aa		9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	MMRN1	Q13201	1228 aa		9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	CUL4A	Q13619	759 aa		9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	NECTIN1	Q15223	517 aa		9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	HLF	Q16534	295 aa		9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	USPL1	Q5W0Q7	1092 aa		9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	TTLL11	Q8NHH1	800 aa		9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	MAP4K1	Q92918	833 aa		9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	INTS4	Q96HW7	963 aa	Known RBP	9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	IL25	Q9H293	177 aa		9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	AKAP2	Q9Y2D5	859 aa		9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	LY75	O60449	1722 aa		9.27	□□□□□ -0.93
SYNE1-231	ENST00000498751	CAMTA2	O94983	1202 aa		9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	HMGB2	P26583	209 aa	Known RBP	9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	ATP6V1A	P38606	617 aa		9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	CTSW	P56202	376 aa		9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	PIP4K2B	P78356	416 aa		9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	ITPK1	Q13572	414 aa		9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	CCDC57	Q2TAC2	916 aa		9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	KBTBD3	Q8NAB2	608 aa		9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	KLHDC4	Q8TBB5	520 aa		9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	NGLY1	Q96IV0	654 aa		9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	RIPOR2	Q9Y4F9	1068 aa		9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	MYH3	P11055	1940 aa		9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	UBN2	Q6ZU65	1347 aa		9.26	□□□□□ -0.93
SYNE1-231	ENST00000498751	CYP2E1	P05181	493 aa	Predicted RBP	9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	RAB3GAP1	Q15042	981 aa		9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	ARSI	Q5FYB1	569 aa		9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	VARS2	Q5ST30	1063 aa	Known RBP	9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	VGLL2	Q8N8G2	317 aa		9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	KHSRP	Q92945	711 aa	Known RBP eCLIP	9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	GJD4	Q96KN9	370 aa	Predicted RBP	9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	CCDC8	Q9H0W5	538 aa	Predicted RBP	9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	ANO2	Q9NQ90	1003 aa		9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	DIAPH3	Q9NSV4	1193 aa		9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	TLR7	Q9NYK1	1049 aa	Known RBP	9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	USP21	Q9UK80	565 aa		9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	CCDC171	Q6TFL3	1326 aa		9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	SH3TC1	Q8TE82	1336 aa		9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	COL24A1	Q17RW2	1714 aa		9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	ARAP2	Q8WZ64	1704 aa		9.25	□□□□□ -0.93
SYNE1-231	ENST00000498751	MYH14	Q7Z406	1995 aa	Known RBP	9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	RIC1	Q4ADV7	1423 aa		9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	NUTM2B	A6NNL0	878 aa	Predicted RBP	9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	NUTM2E	B1AL46	878 aa	Predicted RBP	9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	PTMS	P20962	102 aa		9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	IFIT5	Q13325	482 aa	Known RBP	9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	RTL5	Q5HYW3	569 aa	Predicted RBP	9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	SLC10A5	Q5PT55	438 aa		9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	KIAA1211	Q6ZU35	1233 aa		9.24	□□□□□ -0.93
SYNE1-231	ENST00000498751	NUTM2A	Q8IVF1	878 aa	Predicted RBP	9.24	□□□□□ -0.93

Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms