RNA–Protein interactions for RNA: ENST00000492996.6

HERC4-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 3,385 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-211ENST00000492996 CHPF2Q9P2E5 772 aa8.59□□□□□ -1.03
HERC4-211ENST00000492996 ZBED3Q96IU2 234 aaPredicted RBP8.59□□□□□ -1.03
HERC4-211ENST00000492996 PPP1R1BQ9UD71 204 aaPredicted RBP8.59□□□□□ -1.03
HERC4-211ENST00000492996 GREB1LQ9C091 1923 aaPredicted RBP8.59□□□□□ -1.03
HERC4-211ENST00000492996 CASP8AP2Q9UKL3 1982 aa8.59□□□□□ -1.03
HERC4-211ENST00000492996 GNAI3P08754 354 aa8.59□□□□□ -1.03
HERC4-211ENST00000492996 PRR5LQ6MZQ0 368 aa8.59□□□□□ -1.03
HERC4-211ENST00000492996 USP50Q70EL3 339 aaPredicted RBP8.59□□□□□ -1.03
HERC4-211ENST00000492996 KIF2CQ99661 725 aa8.59□□□□□ -1.03
HERC4-211ENST00000492996 EP400Q96L91 3159 aa8.59□□□□□ -1.03
HERC4-211ENST00000492996 ZBTB7AO95365 584 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 UBTFL1P0CB47 393 aaPredicted RBP8.58□□□□□ -1.04
HERC4-211ENST00000492996 HSP90B1P14625 803 aaKnown RBP8.58□□□□□ -1.04
HERC4-211ENST00000492996 LDHDQ86WU2 507 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 ACSBG1Q96GR2 724 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 USP44Q9H0E7 712 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 DOCK1Q14185 1865 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 SCN9AQ15858 1988 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 PRAMEF22A3QJZ6 481 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 PI4KAP2A4QPH2 592 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 MMP10P09238 476 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 ALDH1B1P30837 517 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 FAM182BQ5T319 152 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 PI4KAP1Q8N8J0 262 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 MRIQ9BWK5 157 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 IL1RAPL2Q9NP60 686 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 DPEP1P16444 411 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 GZF1Q9H116 711 aaPredicted RBP8.58□□□□□ -1.04
HERC4-211ENST00000492996 CHMP5Q9NZZ3 219 aa8.58□□□□□ -1.04
HERC4-211ENST00000492996 GNPATO15228 680 aa8.57□□□□□ -1.04
HERC4-211ENST00000492996 PDE1AP54750 535 aa8.57□□□□□ -1.04
HERC4-211ENST00000492996 FKBP1BP68106 108 aa8.57□□□□□ -1.04
HERC4-211ENST00000492996 GIGYF2Q6Y7W6 1299 aaKnown RBP8.57□□□□□ -1.04
HERC4-211ENST00000492996 SP8Q8IXZ3 490 aa8.57□□□□□ -1.04
HERC4-211ENST00000492996 ZCCHC17Q9NP64 241 aaKnown RBP8.57□□□□□ -1.04
HERC4-211ENST00000492996 AKAP11Q9UKA4 1901 aa8.57□□□□□ -1.04
HERC4-211ENST00000492996 MGAMO43451 1857 aa8.57□□□□□ -1.04
HERC4-211ENST00000492996 MED23Q9ULK4 1368 aa8.57□□□□□ -1.04
HERC4-211ENST00000492996 ZNF280AP59817 542 aaPredicted RBP8.57□□□□□ -1.04
HERC4-211ENST00000492996 MAP3K11Q16584 847 aa8.57□□□□□ -1.04
HERC4-211ENST00000492996 GPC2Q8N158 579 aa8.57□□□□□ -1.04
HERC4-211ENST00000492996 SRCIN1Q9C0H9 1055 aa8.57□□□□□ -1.04
HERC4-211ENST00000492996 CA12O43570 354 aa8.56□□□□□ -1.04
HERC4-211ENST00000492996 NBPF7P0C2Y1 421 aaPredicted RBP8.56□□□□□ -1.04
HERC4-211ENST00000492996 ATP8B2P98198 1209 aa8.56□□□□□ -1.04
HERC4-211ENST00000492996 TTLL6Q8N841 843 aa8.56□□□□□ -1.04
HERC4-211ENST00000492996 RILPL2Q969X0 211 aa8.56□□□□□ -1.04
HERC4-211ENST00000492996 LRRCC1Q9C099 1032 aa8.56□□□□□ -1.04
HERC4-211ENST00000492996 TRIM6-TRIM34B2RNG4 842 aa8.56□□□□□ -1.04
HERC4-211ENST00000492996 DPF2Q92785 391 aa8.56□□□□□ -1.04
HERC4-211ENST00000492996 SURF6O75683 361 aaKnown RBP8.56□□□□□ -1.04
HERC4-211ENST00000492996 SERPINB2P05120 415 aa8.56□□□□□ -1.04
HERC4-211ENST00000492996 AIMP1Q12904 312 aaKnown RBP8.56□□□□□ -1.04
HERC4-211ENST00000492996 SLC39A6Q13433 755 aa8.56□□□□□ -1.04
HERC4-211ENST00000492996 PROSER3Q2NL68 480 aa8.56□□□□□ -1.04
HERC4-211ENST00000492996 PARP14Q460N5 1801 aa8.56□□□□□ -1.04
HERC4-211ENST00000492996 NBPF26B4DH59 902 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 NBPF10Q6P3W6 841 aaKnown RBP8.55□□□□□ -1.04
HERC4-211ENST00000492996 CASC1Q6TDU7 716 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 PPP1R42Q7Z4L9 355 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 NUTM1Q86Y26 1132 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 NBPF15Q8N660 670 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 SIPA1L1O43166 1804 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 SRGAP3O43295 1099 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 MAP4K4O95819 1239 aaPredicted RBP8.55□□□□□ -1.04
HERC4-211ENST00000492996 MCM4P33991 863 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 RFC4P35249 363 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 DDX54Q8TDD1 881 aaKnown RBP8.55□□□□□ -1.04
HERC4-211ENST00000492996 DNAAF4Q8WXU2 420 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 USP26Q9BXU7 913 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 IQCA1LA6NCM1 817 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 BBOX1O75936 387 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 CCDC93Q567U6 631 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 NFATC2IPQ8NCF5 419 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 SNX21Q969T3 373 aa8.55□□□□□ -1.04
HERC4-211ENST00000492996 K7ELQ4 463 aaPredicted RBP8.54□□□□□ -1.04
HERC4-211ENST00000492996 MX1P20591 662 aa8.54□□□□□ -1.04
HERC4-211ENST00000492996 PNMA8AQ86V59 439 aaPredicted RBP8.54□□□□□ -1.04
HERC4-211ENST00000492996 PPP2R3BQ9Y5P8 575 aa8.54□□□□□ -1.04
HERC4-211ENST00000492996 ATAD5Q96QE3 1844 aa8.54□□□□□ -1.04
HERC4-211ENST00000492996 KLHL34Q8N239 644 aa8.54□□□□□ -1.04
HERC4-211ENST00000492996 BBXQ8WY36 941 aaPredicted RBP8.54□□□□□ -1.04
HERC4-211ENST00000492996 RFX7Q2KHR2 1363 aa8.54□□□□□ -1.04
HERC4-211ENST00000492996 PTPRFP10586 1907 aa8.53□□□□□ -1.04
HERC4-211ENST00000492996 ITGBL1O95965 494 aaPredicted RBP8.53□□□□□ -1.04
HERC4-211ENST00000492996 ST5P78524 1137 aa8.53□□□□□ -1.04
HERC4-211ENST00000492996 CWF19L2Q2TBE0 894 aaKnown RBP8.53□□□□□ -1.04
HERC4-211ENST00000492996 PAXIP1Q6ZW49 1069 aaPredicted RBP8.53□□□□□ -1.04
HERC4-211ENST00000492996 DNAJC10Q8IXB1 793 aa8.53□□□□□ -1.04
HERC4-211ENST00000492996 DDX21Q9NR30 783 aaKnown RBP eCLIP8.53□□□□□ -1.04
HERC4-211ENST00000492996 ATP6V0A2Q9Y487 856 aa8.53□□□□□ -1.04
HERC4-211ENST00000492996 PIP4K2AP48426 406 aaPredicted RBP8.53□□□□□ -1.04
HERC4-211ENST00000492996 OS9Q13438 667 aaPredicted RBP8.53□□□□□ -1.04
HERC4-211ENST00000492996 TAF7LQ5H9L4 462 aa8.53□□□□□ -1.04
HERC4-211ENST00000492996 ZBTB1Q9Y2K1 713 aa8.53□□□□□ -1.04
HERC4-211ENST00000492996 MAP3K2Q9Y2U5 619 aa8.53□□□□□ -1.04
HERC4-211ENST00000492996 BEND3Q5T5X7 828 aa8.53□□□□□ -1.04
HERC4-211ENST00000492996 C9orf78Q9NZ63 289 aaPredicted RBP8.53□□□□□ -1.04
HERC4-211ENST00000492996 DBF4Q9UBU7 674 aaPredicted RBP8.53□□□□□ -1.04
HERC4-211ENST00000492996 FBXO3Q9UK99 471 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms