RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 WDR33Q9C0J8 1336 aaKnown RBP25.25■■□□□ 1.63
CCDC88B-208ENST00000492980 IRS4O14654 1257 aaPredicted RBP25.25■■□□□ 1.63
CCDC88B-208ENST00000492980 INTS5Q6P9B9 1019 aaKnown RBP25.25■■□□□ 1.63
CCDC88B-208ENST00000492980 BLOC1S2Q6QNY1 142 aa25.25■■□□□ 1.63
CCDC88B-208ENST00000492980 GREM2Q9H772 168 aa25.25■■□□□ 1.63
CCDC88B-208ENST00000492980 TRMT112Q9UI30 125 aaKnown RBP25.25■■□□□ 1.63
CCDC88B-208ENST00000492980 UBN2Q6ZU65 1347 aa25.25■■□□□ 1.63
CCDC88B-208ENST00000492980 RPS6KB1P23443 525 aa25.24■■□□□ 1.63
CCDC88B-208ENST00000492980 ADORA1P30542 326 aa25.24■■□□□ 1.63
CCDC88B-208ENST00000492980 EIF5P55010 431 aaKnown RBP25.24■■□□□ 1.63
CCDC88B-208ENST00000492980 PIP4K2BP78356 416 aa25.24■■□□□ 1.63
CCDC88B-208ENST00000492980 ZNF34Q8IZ26 560 aa25.24■■□□□ 1.63
CCDC88B-208ENST00000492980 HELLSQ9NRZ9 838 aa25.24■■□□□ 1.63
CCDC88B-208ENST00000492980 U3KPZ7 1027 aaPredicted RBP25.24■■□□□ 1.63
CCDC88B-208ENST00000492980 A0A0G2JS52 829 aa25.24■■□□□ 1.63
CCDC88B-208ENST00000492980 ITGA6P23229 1130 aa25.24■■□□□ 1.63
CCDC88B-208ENST00000492980 XAGE2Q96GT9 111 aa25.24■■□□□ 1.63
CCDC88B-208ENST00000492980 ALDH8A1Q9H2A2 487 aaPredicted RBP25.24■■□□□ 1.63
CCDC88B-208ENST00000492980 ST3GAL1Q11201 340 aa25.23■■□□□ 1.63
CCDC88B-208ENST00000492980 CCDC83Q8IWF9 413 aa25.23■■□□□ 1.63
CCDC88B-208ENST00000492980 CCDC87Q9NVE4 849 aa25.23■■□□□ 1.63
CCDC88B-208ENST00000492980 SMC3Q9UQE7 1217 aa25.23■■□□□ 1.63
CCDC88B-208ENST00000492980 RIPOR2Q9Y4F9 1068 aa25.23■■□□□ 1.63
CCDC88B-208ENST00000492980 ME3Q16798 604 aa25.22■■□□□ 1.63
CCDC88B-208ENST00000492980 ZMYM1Q5SVZ6 1142 aa25.22■■□□□ 1.63
CCDC88B-208ENST00000492980 TOM1O60784 492 aa25.22■■□□□ 1.63
CCDC88B-208ENST00000492980 ATP6V1AP38606 617 aa25.22■■□□□ 1.63
CCDC88B-208ENST00000492980 MRE11P49959 708 aa25.22■■□□□ 1.63
CCDC88B-208ENST00000492980 KRT32Q14532 448 aa25.22■■□□□ 1.63
CCDC88B-208ENST00000492980 SLFNL1Q499Z3 407 aa25.22■■□□□ 1.63
CCDC88B-208ENST00000492980 CCDC158Q5M9N0 1113 aa25.22■■□□□ 1.63
CCDC88B-208ENST00000492980 TPCN1Q9ULQ1 816 aa25.22■■□□□ 1.63
CCDC88B-208ENST00000492980 LOC102724428A0A0B4J2F2 783 aa25.21■■□□□ 1.63
CCDC88B-208ENST00000492980 ANKRD18BA2A2Z9 1011 aa25.21■■□□□ 1.63
CCDC88B-208ENST00000492980 CRKLP46109 303 aaKnown RBP25.21■■□□□ 1.63
CCDC88B-208ENST00000492980 SIK1P57059 783 aa25.21■■□□□ 1.63
CCDC88B-208ENST00000492980 TTC39AQ5SRH9 613 aa25.21■■□□□ 1.63
CCDC88B-208ENST00000492980 GAS2L3Q86XJ1 694 aa25.21■■□□□ 1.63
CCDC88B-208ENST00000492980 PDE8AO60658 829 aa25.21■■□□□ 1.63
CCDC88B-208ENST00000492980 GPT2Q8TD30 523 aa25.21■■□□□ 1.63
CCDC88B-208ENST00000492980 ANKRD1Q15327 319 aa25.2■■□□□ 1.62
CCDC88B-208ENST00000492980 GORABQ5T7V8 394 aa25.2■■□□□ 1.62
CCDC88B-208ENST00000492980 LRP5O75197 1615 aa25.2■■□□□ 1.62
CCDC88B-208ENST00000492980 RNF113AO15541 343 aaKnown RBP25.19■■□□□ 1.62
CCDC88B-208ENST00000492980 ITPK1Q13572 414 aa25.19■■□□□ 1.62
CCDC88B-208ENST00000492980 METTL24Q5JXM2 366 aa25.19■■□□□ 1.62
CCDC88B-208ENST00000492980 LDHAL6AQ6ZMR3 332 aa25.19■■□□□ 1.62
CCDC88B-208ENST00000492980 GRPEL1Q9HAV7 217 aa25.19■■□□□ 1.62
CCDC88B-208ENST00000492980 MYH14Q7Z406 1995 aaKnown RBP25.19■■□□□ 1.62
CCDC88B-208ENST00000492980 SYT1P21579 422 aa25.19■■□□□ 1.62
CCDC88B-208ENST00000492980 TCEANC2Q96MN5 208 aa25.19■■□□□ 1.62
CCDC88B-208ENST00000492980 CYP21A2P08686 494 aa25.18■■□□□ 1.62
CCDC88B-208ENST00000492980 NCLP19338 710 aaKnown RBP25.18■■□□□ 1.62
CCDC88B-208ENST00000492980 TOB2Q14106 344 aaPredicted RBP25.18■■□□□ 1.62
CCDC88B-208ENST00000492980 ATP2B3Q16720 1220 aa25.18■■□□□ 1.62
CCDC88B-208ENST00000492980 STX6O43752 255 aa25.18■■□□□ 1.62
CCDC88B-208ENST00000492980 ZSCAN22P10073 491 aaPredicted RBP25.18■■□□□ 1.62
CCDC88B-208ENST00000492980 GJB2P29033 226 aa25.18■■□□□ 1.62
CCDC88B-208ENST00000492980 CAVIN1Q6NZI2 390 aaKnown RBP25.18■■□□□ 1.62
CCDC88B-208ENST00000492980 NECAB1Q8N987 351 aa25.18■■□□□ 1.62
CCDC88B-208ENST00000492980 DSCC1Q9BVC3 393 aa25.18■■□□□ 1.62
CCDC88B-208ENST00000492980 ABCC12Q96J65 1359 aa25.18■■□□□ 1.62
CCDC88B-208ENST00000492980 MAST3O60307 1309 aa25.17■■□□□ 1.62
CCDC88B-208ENST00000492980 FKBP4Q02790 459 aaKnown RBP eCLIP25.17■■□□□ 1.62
CCDC88B-208ENST00000492980 NEK1Q96PY6 1258 aa25.17■■□□□ 1.62
CCDC88B-208ENST00000492980 SCARF1Q14162 830 aa25.16■■□□□ 1.62
CCDC88B-208ENST00000492980 VGLL2Q8N8G2 317 aa25.16■■□□□ 1.62
CCDC88B-208ENST00000492980 CNNM1Q9NRU3 951 aa25.16■■□□□ 1.62
CCDC88B-208ENST00000492980 COL5A3P25940 1745 aaPredicted RBP25.16■■□□□ 1.62
CCDC88B-208ENST00000492980 PANK2Q9BZ23 570 aa25.16■■□□□ 1.62
CCDC88B-208ENST00000492980 LAMA4Q16363 1823 aa25.15■■□□□ 1.62
CCDC88B-208ENST00000492980 CAMTA2O94983 1202 aa25.15■■□□□ 1.62
CCDC88B-208ENST00000492980 SUSD4Q5VX71 490 aa25.15■■□□□ 1.62
CCDC88B-208ENST00000492980 AK7Q96M32 723 aa25.15■■□□□ 1.62
CCDC88B-208ENST00000492980 AKAP11Q9UKA4 1901 aa25.14■■□□□ 1.61
CCDC88B-208ENST00000492980 M0R2C6 588 aa25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 KCNQ2O43526 872 aa25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 HSPD1P10809 573 aaKnown RBP25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 ZNF445P59923 1031 aa25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 ZSCAN23Q3MJ62 389 aa25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 DDX60Q8IY21 1712 aaKnown RBP25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 MYH7P12883 1935 aa25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 ZNF831Q5JPB2 1677 aa25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 ZAP70P43403 619 aa25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 LRRFIP1Q32MZ4 808 aaKnown RBP25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 FOXD4L6Q3SYB3 417 aaPredicted RBP25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 FOXD4L3Q6VB84 417 aaPredicted RBP25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 STOX1Q6ZVD7 989 aa25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 SMARCC1Q92922 1105 aaPredicted RBP25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 NSFL1CQ9UNZ2 370 aaKnown RBP25.13■■□□□ 1.61
CCDC88B-208ENST00000492980 DTNBO60941 627 aa25.12■■□□□ 1.61
CCDC88B-208ENST00000492980 MBD3O95983 291 aa25.12■■□□□ 1.61
CCDC88B-208ENST00000492980 F13A1P00488 732 aa25.12■■□□□ 1.61
CCDC88B-208ENST00000492980 OSBP2Q969R2 916 aa25.12■■□□□ 1.61
CCDC88B-208ENST00000492980 TCHHQ07283 1943 aa25.12■■□□□ 1.61
CCDC88B-208ENST00000492980 ZFYP08048 801 aaPredicted RBP25.12■■□□□ 1.61
CCDC88B-208ENST00000492980 RBM27Q9P2N5 1060 aaKnown RBP25.12■■□□□ 1.61
CCDC88B-208ENST00000492980 ARAP2Q8WZ64 1704 aa25.11■■□□□ 1.61
CCDC88B-208ENST00000492980 LAMB2P55268 1798 aa25.11■■□□□ 1.61
CCDC88B-208ENST00000492980 PDE8BO95263 885 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms