RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 DOT1LQ8TEK3 1739 aa12.91□□□□□ -0.34
USP4-214ENST00000491791 HMGB2P26583 209 aaKnown RBP12.91□□□□□ -0.34
USP4-214ENST00000491791 PTH1RQ03431 593 aa12.91□□□□□ -0.34
USP4-214ENST00000491791 GPR162Q16538 588 aa12.91□□□□□ -0.34
USP4-214ENST00000491791 KLHL40Q2TBA0 621 aa12.91□□□□□ -0.34
USP4-214ENST00000491791 L1TD1Q5T7N2 865 aaKnown RBP12.91□□□□□ -0.34
USP4-214ENST00000491791 KLHL34Q8N239 644 aa12.91□□□□□ -0.34
USP4-214ENST00000491791 ZGPATQ8N5A5 531 aaKnown RBP12.91□□□□□ -0.34
USP4-214ENST00000491791 KBTBD3Q8NAB2 608 aa12.91□□□□□ -0.34
USP4-214ENST00000491791 BOLA2Q9H3K6 86 aa12.91□□□□□ -0.34
USP4-214ENST00000491791 TFCP2L1Q9NZI6 479 aa12.91□□□□□ -0.34
USP4-214ENST00000491791 LIMCH1Q9UPQ0 1083 aa12.91□□□□□ -0.34
USP4-214ENST00000491791 SH3TC1Q8TE82 1336 aa12.9□□□□□ -0.34
USP4-214ENST00000491791 TAF5LO75529 589 aa12.9□□□□□ -0.34
USP4-214ENST00000491791 ZKSCAN1P17029 563 aaPredicted RBP12.9□□□□□ -0.34
USP4-214ENST00000491791 PSMA5P28066 241 aa12.9□□□□□ -0.34
USP4-214ENST00000491791 RNF20Q5VTR2 975 aa12.9□□□□□ -0.34
USP4-214ENST00000491791 NLRP10Q86W26 655 aa12.9□□□□□ -0.34
USP4-214ENST00000491791 ZNF34Q8IZ26 560 aa12.9□□□□□ -0.34
USP4-214ENST00000491791 JARID2Q92833 1246 aaPredicted RBP12.9□□□□□ -0.34
USP4-214ENST00000491791 AKT1S1Q96B36 256 aa12.9□□□□□ -0.34
USP4-214ENST00000491791 FAM227BQ96M60 508 aa12.9□□□□□ -0.34
USP4-214ENST00000491791 DBNDD2Q9BQY9 259 aa12.9□□□□□ -0.34
USP4-214ENST00000491791 FSD1Q9BTV5 496 aa12.9□□□□□ -0.34
USP4-214ENST00000491791 SH2B1Q9NRF2 756 aaPredicted RBP12.9□□□□□ -0.34
USP4-214ENST00000491791 LRRC4BQ9NT99 713 aa12.9□□□□□ -0.34
USP4-214ENST00000491791 AKAP2Q9Y2D5 859 aa12.9□□□□□ -0.34
USP4-214ENST00000491791 RBM8AQ9Y5S9 174 aaKnown RBP12.9□□□□□ -0.34
USP4-214ENST00000491791 A0A0D9SFI3 127 aa12.89□□□□□ -0.35
USP4-214ENST00000491791 PRIM1P49642 420 aaKnown RBP12.89□□□□□ -0.35
USP4-214ENST00000491791 EIF5P55010 431 aaKnown RBP12.89□□□□□ -0.35
USP4-214ENST00000491791 CREB3L3Q68CJ9 461 aa12.89□□□□□ -0.35
USP4-214ENST00000491791 RUFY3Q7L099 469 aa12.89□□□□□ -0.35
USP4-214ENST00000491791 ZNF512BQ96KM6 892 aaPredicted RBP12.89□□□□□ -0.35
USP4-214ENST00000491791 UPF3BQ9BZI7 483 aaKnown RBP12.89□□□□□ -0.35
USP4-214ENST00000491791 HELLSQ9NRZ9 838 aa12.89□□□□□ -0.35
USP4-214ENST00000491791 CYP46A1Q9Y6A2 500 aa12.89□□□□□ -0.35
USP4-214ENST00000491791 NUP98P52948 1817 aa12.88□□□□□ -0.35
USP4-214ENST00000491791 CHD4Q14839 1912 aa12.88□□□□□ -0.35
USP4-214ENST00000491791 SLC27A2O14975 620 aa12.88□□□□□ -0.35
USP4-214ENST00000491791 KRT32Q14532 448 aa12.88□□□□□ -0.35
USP4-214ENST00000491791 CCDC57Q2TAC2 916 aa12.88□□□□□ -0.35
USP4-214ENST00000491791 FOXD4L1Q9NU39 408 aa12.88□□□□□ -0.35
USP4-214ENST00000491791 LMBRD1Q9NUN5 540 aa12.88□□□□□ -0.35
USP4-214ENST00000491791 CEP126Q9P2H0 1117 aa12.88□□□□□ -0.35
USP4-214ENST00000491791 U3KPZ7 1027 aaPredicted RBP12.88□□□□□ -0.35
USP4-214ENST00000491791 AK2P54819 239 aa12.87□□□□□ -0.35
USP4-214ENST00000491791 ANKRD1Q15327 319 aa12.87□□□□□ -0.35
USP4-214ENST00000491791 MCMDC2Q4G0Z9 681 aa12.87□□□□□ -0.35
USP4-214ENST00000491791 PRPF40BQ6NWY9 871 aaKnown RBP12.87□□□□□ -0.35
USP4-214ENST00000491791 RIPOR2Q9Y4F9 1068 aa12.87□□□□□ -0.35
USP4-214ENST00000491791 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.87□□□□□ -0.35
USP4-214ENST00000491791 PNPLA7Q6ZV29 1317 aa12.87□□□□□ -0.35
USP4-214ENST00000491791 MYH3P11055 1940 aa12.86□□□□□ -0.35
USP4-214ENST00000491791 RTL9Q8NET4 1388 aa12.86□□□□□ -0.35
USP4-214ENST00000491791 A0A1B0GUL7 405 aa12.86□□□□□ -0.35
USP4-214ENST00000491791 IFIT5Q13325 482 aaKnown RBP12.86□□□□□ -0.35
USP4-214ENST00000491791 LRRFIP1Q32MZ4 808 aaKnown RBP12.86□□□□□ -0.35
USP4-214ENST00000491791 LRRC24Q50LG9 513 aa12.86□□□□□ -0.35
USP4-214ENST00000491791 ZMYM1Q5SVZ6 1142 aa12.86□□□□□ -0.35
USP4-214ENST00000491791 TTLL11Q8NHH1 800 aa12.86□□□□□ -0.35
USP4-214ENST00000491791 SMARCC1Q92922 1105 aaPredicted RBP12.86□□□□□ -0.35
USP4-214ENST00000491791 DSCC1Q9BVC3 393 aa12.86□□□□□ -0.35
USP4-214ENST00000491791 PDRG1Q9NUG6 133 aa12.86□□□□□ -0.35
USP4-214ENST00000491791 CCNL1Q9UK58 526 aaPredicted RBP12.86□□□□□ -0.35
USP4-214ENST00000491791 ZBTB1Q9Y2K1 713 aa12.86□□□□□ -0.35
USP4-214ENST00000491791 WDR33Q9C0J8 1336 aaKnown RBP12.86□□□□□ -0.35
USP4-214ENST00000491791 QSER1Q2KHR3 1735 aa12.85□□□□□ -0.35
USP4-214ENST00000491791 CASTP20810 708 aaKnown RBP12.85□□□□□ -0.35
USP4-214ENST00000491791 PKP1Q13835 747 aa12.85□□□□□ -0.35
USP4-214ENST00000491791 HLFQ16534 295 aa12.85□□□□□ -0.35
USP4-214ENST00000491791 ADCK5Q3MIX3 580 aa12.85□□□□□ -0.35
USP4-214ENST00000491791 INTS5Q6P9B9 1019 aaKnown RBP12.85□□□□□ -0.35
USP4-214ENST00000491791 JAKMIP1Q96N16 626 aaKnown RBP12.85□□□□□ -0.35
USP4-214ENST00000491791 CCDC87Q9NVE4 849 aa12.85□□□□□ -0.35
USP4-214ENST00000491791 PAG1Q9NWQ8 432 aa12.85□□□□□ -0.35
USP4-214ENST00000491791 COL5A3P25940 1745 aaPredicted RBP12.85□□□□□ -0.35
USP4-214ENST00000491791 GOLGA6L3A6NEY3 463 aa12.84□□□□□ -0.35
USP4-214ENST00000491791 PDE8AO60658 829 aa12.84□□□□□ -0.35
USP4-214ENST00000491791 ZFYP08048 801 aaPredicted RBP12.84□□□□□ -0.35
USP4-214ENST00000491791 HSP90B1P14625 803 aaKnown RBP12.84□□□□□ -0.35
USP4-214ENST00000491791 RPS6KB1P23443 525 aa12.84□□□□□ -0.35
USP4-214ENST00000491791 MRE11P49959 708 aa12.84□□□□□ -0.35
USP4-214ENST00000491791 CTSWP56202 376 aa12.84□□□□□ -0.35
USP4-214ENST00000491791 PARP10Q53GL7 1025 aa12.84□□□□□ -0.35
USP4-214ENST00000491791 ZNF589Q86UQ0 364 aaPredicted RBP12.84□□□□□ -0.35
USP4-214ENST00000491791 FBXL16Q8N461 479 aa12.84□□□□□ -0.35
USP4-214ENST00000491791 VGLL2Q8N8G2 317 aa12.84□□□□□ -0.35
USP4-214ENST00000491791 TMEM87AQ8NBN3 555 aa12.84□□□□□ -0.35
USP4-214ENST00000491791 FAM89AQ96GI7 184 aa12.84□□□□□ -0.35
USP4-214ENST00000491791 PUS3Q9BZE2 481 aaKnown RBP12.84□□□□□ -0.35
USP4-214ENST00000491791 CHMP3Q9Y3E7 222 aa12.84□□□□□ -0.35
USP4-214ENST00000491791 RIC1Q4ADV7 1423 aa12.84□□□□□ -0.35
USP4-214ENST00000491791 LAMB2P55268 1798 aa12.84□□□□□ -0.35
USP4-214ENST00000491791 RNF113AO15541 343 aaKnown RBP12.83□□□□□ -0.36
USP4-214ENST00000491791 GRIN3BO60391 1043 aa12.83□□□□□ -0.36
USP4-214ENST00000491791 IFIT1P09914 478 aaKnown RBP12.83□□□□□ -0.36
USP4-214ENST00000491791 KCNQ4P56696 695 aa12.83□□□□□ -0.36
USP4-214ENST00000491791 C1QTNF8P60827 252 aa12.83□□□□□ -0.36
USP4-214ENST00000491791 TIMM10P62072 90 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms