RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 RAB3GAP1Q15042 981 aa14.97□□□□□ -0.01
COL6A3-212ENST00000491769 BRDTQ58F21 947 aaPredicted RBP14.97□□□□□ -0.01
COL6A3-212ENST00000491769 HARSP12081 509 aaKnown RBP14.97□□□□□ -0.01
COL6A3-212ENST00000491769 TRAPPC3LQ5T215 181 aa14.97□□□□□ -0.01
COL6A3-212ENST00000491769 CCDC50Q8IVM0 306 aa14.97□□□□□ -0.01
COL6A3-212ENST00000491769 MCM9Q9NXL9 1143 aa14.97□□□□□ -0.01
COL6A3-212ENST00000491769 IVNS1ABPQ9Y6Y0 642 aa14.97□□□□□ -0.01
COL6A3-212ENST00000491769 SNX16P57768 344 aa14.97□□□□□ -0.01
COL6A3-212ENST00000491769 ODF2LQ9ULJ1 636 aa14.97□□□□□ -0.01
COL6A3-212ENST00000491769 GNAQP50148 359 aa14.96□□□□□ -0.01
COL6A3-212ENST00000491769 FAM83GA6ND36 823 aa14.96□□□□□ -0.01
COL6A3-212ENST00000491769 CHPF2Q9P2E5 772 aa14.96□□□□□ -0.01
COL6A3-212ENST00000491769 SBNO2Q9Y2G9 1366 aa14.96□□□□□ -0.01
COL6A3-212ENST00000491769 AKR1B10O60218 316 aa14.96□□□□□ -0.01
COL6A3-212ENST00000491769 CCDC102BQ68D86 513 aa14.96□□□□□ -0.01
COL6A3-212ENST00000491769 CIZ1Q9ULV3 898 aaPredicted RBP14.96□□□□□ -0.01
COL6A3-212ENST00000491769 EIF6P56537 245 aaKnown RBP14.96□□□□□ -0.01
COL6A3-212ENST00000491769 COPS6Q7L5N1 327 aa14.96□□□□□ -0.01
COL6A3-212ENST00000491769 KIF2AO00139 706 aaPredicted RBP14.96□□□□□ -0.02
COL6A3-212ENST00000491769 N4BP3O15049 544 aa14.96□□□□□ -0.02
COL6A3-212ENST00000491769 ASIC1P78348 528 aa14.96□□□□□ -0.02
COL6A3-212ENST00000491769 CNNM2Q9H8M5 875 aa14.96□□□□□ -0.02
COL6A3-212ENST00000491769 GINS2Q9Y248 185 aa14.96□□□□□ -0.02
COL6A3-212ENST00000491769 RNF34Q969K3 372 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 IL2RBP14784 551 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 PSMC4P43686 418 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 TICAM2Q86XR7 235 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 KIF18AQ8NI77 898 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 BBXQ8WY36 941 aaPredicted RBP14.95□□□□□ -0.02
COL6A3-212ENST00000491769 PLCG2P16885 1265 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 PLCB3Q01970 1234 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 IDI1Q13907 227 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 MIGA1Q8NAN2 632 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 LRRC2Q9BYS8 371 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 MXRA7P84157 204 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 HAUS7Q99871 368 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 ARHGEF11O15085 1522 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 LDHBP07195 334 aaKnown RBP14.95□□□□□ -0.02
COL6A3-212ENST00000491769 GPR162Q16538 588 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 STX1AQ16623 288 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 SLC9C2Q5TAH2 1124 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 C6orf163Q5TEZ5 329 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 HELBQ8NG08 1087 aaPredicted RBP14.95□□□□□ -0.02
COL6A3-212ENST00000491769 ALG1Q9BT22 464 aa14.95□□□□□ -0.02
COL6A3-212ENST00000491769 FAM135AQ9P2D6 1515 aa14.94□□□□□ -0.02
COL6A3-212ENST00000491769 ARID5AQ03989 594 aa14.94□□□□□ -0.02
COL6A3-212ENST00000491769 CEP83Q9Y592 693 aa14.94□□□□□ -0.02
COL6A3-212ENST00000491769 WDR7Q9Y4E6 1490 aa14.94□□□□□ -0.02
COL6A3-212ENST00000491769 MSANTD4Q8NCY6 345 aa14.94□□□□□ -0.02
COL6A3-212ENST00000491769 SAP30BPQ9UHR5 308 aaKnown RBP14.94□□□□□ -0.02
COL6A3-212ENST00000491769 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.94□□□□□ -0.02
COL6A3-212ENST00000491769 ABCC11Q96J66 1382 aa14.94□□□□□ -0.02
COL6A3-212ENST00000491769 PLEKHH1Q9ULM0 1364 aa14.94□□□□□ -0.02
COL6A3-212ENST00000491769 HSPA2P54652 639 aa14.94□□□□□ -0.02
COL6A3-212ENST00000491769 DDX12PQ92771 950 aa14.94□□□□□ -0.02
COL6A3-212ENST00000491769 BRPF3Q9ULD4 1205 aa14.94□□□□□ -0.02
COL6A3-212ENST00000491769 ZWINTO95229 277 aa14.93□□□□□ -0.02
COL6A3-212ENST00000491769 TMTC2Q8N394 836 aa14.93□□□□□ -0.02
COL6A3-212ENST00000491769 RBM25P49756 843 aaKnown RBP14.93□□□□□ -0.02
COL6A3-212ENST00000491769 ZBTB24O43167 697 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-212ENST00000491769 SPATA24Q86W54 205 aa14.93□□□□□ -0.02
COL6A3-212ENST00000491769 CCDC155Q8N6L0 562 aa14.93□□□□□ -0.02
COL6A3-212ENST00000491769 LMBR1LQ6UX01 489 aa14.93□□□□□ -0.02
COL6A3-212ENST00000491769 CTR9Q6PD62 1173 aa14.92□□□□□ -0.02
COL6A3-212ENST00000491769 TCIRG1Q13488 830 aa14.92□□□□□ -0.02
COL6A3-212ENST00000491769 ZYXQ15942 572 aaKnown RBP14.92□□□□□ -0.02
COL6A3-212ENST00000491769 MAGEB6Q8N7X4 407 aa14.92□□□□□ -0.02
COL6A3-212ENST00000491769 NACA2Q9H009 215 aa14.92□□□□□ -0.02
COL6A3-212ENST00000491769 GDPD2Q9HCC8 539 aa14.92□□□□□ -0.02
COL6A3-212ENST00000491769 ANKRD2Q9GZV1 360 aa14.92□□□□□ -0.02
COL6A3-212ENST00000491769 SH2D4AQ9H788 454 aa14.92□□□□□ -0.02
COL6A3-212ENST00000491769 TNRQ92752 1358 aa14.92□□□□□ -0.02
COL6A3-212ENST00000491769 ZFYP08048 801 aaPredicted RBP14.92□□□□□ -0.02
COL6A3-212ENST00000491769 BMS1Q14692 1282 aaKnown RBP14.92□□□□□ -0.02
COL6A3-212ENST00000491769 HSP90AA4PQ58FG1 418 aa14.92□□□□□ -0.02
COL6A3-212ENST00000491769 CEP112Q8N8E3 955 aa14.92□□□□□ -0.02
COL6A3-212ENST00000491769 MCM4P33991 863 aa14.92□□□□□ -0.02
COL6A3-212ENST00000491769 DDX19AQ9NUU7 478 aaKnown RBP14.92□□□□□ -0.02
COL6A3-212ENST00000491769 HMG20BQ9P0W2 317 aa14.92□□□□□ -0.02
COL6A3-212ENST00000491769 IRS4O14654 1257 aaPredicted RBP14.92□□□□□ -0.02
COL6A3-212ENST00000491769 RARSP54136 660 aaKnown RBP14.92□□□□□ -0.02
COL6A3-212ENST00000491769 CKAP4Q07065 602 aaKnown RBP14.92□□□□□ -0.02
COL6A3-212ENST00000491769 SYKP43405 635 aa14.91□□□□□ -0.02
COL6A3-212ENST00000491769 KRT79Q5XKE5 535 aa14.91□□□□□ -0.02
COL6A3-212ENST00000491769 BRF1Q92994 677 aa14.91□□□□□ -0.02
COL6A3-212ENST00000491769 ADGRF5Q8IZF2 1346 aa14.91□□□□□ -0.02
COL6A3-212ENST00000491769 POLA1P09884 1462 aaPredicted RBP14.91□□□□□ -0.02
COL6A3-212ENST00000491769 RASA3Q14644 834 aa14.91□□□□□ -0.02
COL6A3-212ENST00000491769 CNBD1Q8NA66 436 aa14.91□□□□□ -0.02
COL6A3-212ENST00000491769 TRIM6Q9C030 488 aaPredicted RBP14.91□□□□□ -0.02
COL6A3-212ENST00000491769 TXNDC16Q9P2K2 825 aa14.91□□□□□ -0.02
COL6A3-212ENST00000491769 FAM169AQ9Y6X4 670 aa14.91□□□□□ -0.02
COL6A3-212ENST00000491769 CCDC141Q6ZP82 1450 aa14.91□□□□□ -0.02
COL6A3-212ENST00000491769 NOP56O00567 594 aaKnown RBP14.91□□□□□ -0.02
COL6A3-212ENST00000491769 SPECC1LQ69YQ0 1117 aa14.91□□□□□ -0.02
COL6A3-212ENST00000491769 UFL1O94874 794 aa14.91□□□□□ -0.02
COL6A3-212ENST00000491769 KMT5BQ4FZB7 885 aa14.91□□□□□ -0.02
COL6A3-212ENST00000491769 CCNL1Q9UK58 526 aaPredicted RBP14.91□□□□□ -0.02
COL6A3-212ENST00000491769 MAK16Q9BXY0 300 aaKnown RBP14.91□□□□□ -0.02
COL6A3-212ENST00000491769 RASAL2Q9UJF2 1139 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms