RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 CRY2Q49AN0 593 aa12.51□□□□□ -0.41
HDAC3-210ENST00000490808 COL13A1Q5TAT6 717 aaPredicted RBP12.51□□□□□ -0.41
HDAC3-210ENST00000490808 SOGA3Q5TF21 947 aa12.51□□□□□ -0.41
HDAC3-210ENST00000490808 TBC1D9Q6ZT07 1266 aa12.51□□□□□ -0.41
HDAC3-210ENST00000490808 CNTROBQ8N137 903 aa12.51□□□□□ -0.41
HDAC3-210ENST00000490808 IL27Q8NEV9 243 aa12.51□□□□□ -0.41
HDAC3-210ENST00000490808 MASTLQ96GX5 879 aa12.51□□□□□ -0.41
HDAC3-210ENST00000490808 GSPT1P15170 499 aaKnown RBP12.5□□□□□ -0.41
HDAC3-210ENST00000490808 SDSP20132 328 aa12.5□□□□□ -0.41
HDAC3-210ENST00000490808 TMC4Q7Z404 712 aa12.5□□□□□ -0.41
HDAC3-210ENST00000490808 IL1RAPL2Q9NP60 686 aa12.5□□□□□ -0.41
HDAC3-210ENST00000490808 SALL3Q9BXA9 1300 aa12.5□□□□□ -0.41
HDAC3-210ENST00000490808 AK9Q5TCS8 1911 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 HIP1O00291 1037 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 EPB41L2O43491 1005 aaKnown RBP12.49□□□□□ -0.41
HDAC3-210ENST00000490808 SEC24BO95487 1268 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 SRGNP10124 158 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 HOXA10P31260 410 aaPredicted RBP12.49□□□□□ -0.41
HDAC3-210ENST00000490808 RBM25P49756 843 aaKnown RBP12.49□□□□□ -0.41
HDAC3-210ENST00000490808 CASP7P55210 303 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 CCDC57Q2TAC2 916 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 DALRD3Q5D0E6 543 aaKnown RBP12.49□□□□□ -0.41
HDAC3-210ENST00000490808 CC2D2BQ6DHV5 1058 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 LMBR1LQ6UX01 489 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 C2CD5Q86YS7 1000 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 TTLL6Q8N841 843 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 RILPL2Q969X0 211 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 KAZALD1Q96I82 304 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 PLA2G12BQ9BX93 195 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 ECHDC1Q9NTX5 307 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 CHMP3Q9Y3E7 222 aa12.49□□□□□ -0.41
HDAC3-210ENST00000490808 DDX60Q8IY21 1712 aaKnown RBP12.48□□□□□ -0.41
HDAC3-210ENST00000490808 PDE8AO60658 829 aa12.48□□□□□ -0.41
HDAC3-210ENST00000490808 DPEP1P16444 411 aa12.48□□□□□ -0.41
HDAC3-210ENST00000490808 MCCP23508 829 aa12.48□□□□□ -0.41
HDAC3-210ENST00000490808 SF3B3Q15393 1217 aaKnown RBP12.48□□□□□ -0.41
HDAC3-210ENST00000490808 ERFEQ4G0M1 354 aa12.48□□□□□ -0.41
HDAC3-210ENST00000490808 TAF7LQ5H9L4 462 aa12.48□□□□□ -0.41
HDAC3-210ENST00000490808 TNS4Q8IZW8 715 aa12.48□□□□□ -0.41
HDAC3-210ENST00000490808 RUFY2Q8WXA3 655 aa12.48□□□□□ -0.41
HDAC3-210ENST00000490808 RPGRQ92834 1020 aaKnown RBP12.48□□□□□ -0.41
HDAC3-210ENST00000490808 RBM17Q96I25 401 aaKnown RBP12.48□□□□□ -0.41
HDAC3-210ENST00000490808 CRAMP1Q96RY5 1269 aa12.48□□□□□ -0.41
HDAC3-210ENST00000490808 IRS4O14654 1257 aaPredicted RBP12.47□□□□□ -0.41
HDAC3-210ENST00000490808 IL15P40933 162 aaPredicted RBP12.47□□□□□ -0.41
HDAC3-210ENST00000490808 FOXO4P98177 505 aa12.47□□□□□ -0.41
HDAC3-210ENST00000490808 CCDC152Q4G0S7 254 aa12.47□□□□□ -0.41
HDAC3-210ENST00000490808 AACSQ86V21 672 aa12.47□□□□□ -0.41
HDAC3-210ENST00000490808 NUTM1Q86Y26 1132 aa12.47□□□□□ -0.41
HDAC3-210ENST00000490808 OTUD7AQ8TE49 926 aaPredicted RBP12.47□□□□□ -0.41
HDAC3-210ENST00000490808 TMX4Q9H1E5 349 aaPredicted RBP12.47□□□□□ -0.41
HDAC3-210ENST00000490808 GPR108Q9NPR9 543 aa12.47□□□□□ -0.41
HDAC3-210ENST00000490808 PA2G4Q9UQ80 394 aaKnown RBP12.47□□□□□ -0.41
HDAC3-210ENST00000490808 COL11A2P13942 1736 aaPredicted RBP12.47□□□□□ -0.41
HDAC3-210ENST00000490808 RTL9Q8NET4 1388 aa12.46□□□□□ -0.41
HDAC3-210ENST00000490808 ABCC12Q96J65 1359 aa12.46□□□□□ -0.41
HDAC3-210ENST00000490808 A0A0G2JLW4 131 aa12.46□□□□□ -0.41
HDAC3-210ENST00000490808 FAM177BA6PVY3 158 aa12.46□□□□□ -0.41
HDAC3-210ENST00000490808 BBOX1O75936 387 aa12.46□□□□□ -0.41
HDAC3-210ENST00000490808 CIAO1O76071 339 aa12.46□□□□□ -0.41
HDAC3-210ENST00000490808 KCNA3P22001 575 aa12.46□□□□□ -0.41
HDAC3-210ENST00000490808 PTPN12Q05209 780 aaKnown RBP12.46□□□□□ -0.41
HDAC3-210ENST00000490808 DDX46Q7L014 1031 aaKnown RBP12.46□□□□□ -0.41
HDAC3-210ENST00000490808 TICAM2Q86XR7 235 aa12.46□□□□□ -0.41
HDAC3-210ENST00000490808 SIL1Q9H173 461 aa12.46□□□□□ -0.41
HDAC3-210ENST00000490808 AKAP2Q9Y2D5 859 aa12.46□□□□□ -0.41
HDAC3-210ENST00000490808 SASH1O94885 1247 aa12.45□□□□□ -0.42
HDAC3-210ENST00000490808 RFX5P48382 616 aaPredicted RBP12.45□□□□□ -0.42
HDAC3-210ENST00000490808 PRELPP51888 382 aa12.45□□□□□ -0.42
HDAC3-210ENST00000490808 HTRA3P83110 453 aa12.45□□□□□ -0.42
HDAC3-210ENST00000490808 IFIT5Q13325 482 aaKnown RBP12.45□□□□□ -0.42
HDAC3-210ENST00000490808 EPHA10Q5JZY3 1008 aa12.45□□□□□ -0.42
HDAC3-210ENST00000490808 EVI5LQ96CN4 794 aa12.45□□□□□ -0.42
HDAC3-210ENST00000490808 KLRG1Q96E93 195 aa12.45□□□□□ -0.42
HDAC3-210ENST00000490808 FAM89AQ96GI7 184 aa12.45□□□□□ -0.42
HDAC3-210ENST00000490808 CACNA1SQ13698 1873 aa12.44□□□□□ -0.42
HDAC3-210ENST00000490808 HSCBQ8IWL3 235 aa12.44□□□□□ -0.42
HDAC3-210ENST00000490808 ZNF622Q969S3 477 aaKnown RBP eCLIP12.44□□□□□ -0.42
HDAC3-210ENST00000490808 NMRK2Q9NPI5 230 aa12.44□□□□□ -0.42
HDAC3-210ENST00000490808 CEP126Q9P2H0 1117 aa12.44□□□□□ -0.42
HDAC3-210ENST00000490808 TNRC6CQ9HCJ0 1690 aaKnown RBP12.44□□□□□ -0.42
HDAC3-210ENST00000490808 SLX4Q8IY92 1834 aa12.44□□□□□ -0.42
HDAC3-210ENST00000490808 FER1L6Q2WGJ9 1857 aa12.43□□□□□ -0.42
HDAC3-210ENST00000490808 ANKRD18BA2A2Z9 1011 aa12.43□□□□□ -0.42
HDAC3-210ENST00000490808 EYA2O00167 538 aa12.43□□□□□ -0.42
HDAC3-210ENST00000490808 CSF1RP07333 972 aa12.43□□□□□ -0.42
HDAC3-210ENST00000490808 TNNI3KQ59H18 835 aa12.43□□□□□ -0.42
HDAC3-210ENST00000490808 RTL5Q5HYW3 569 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-210ENST00000490808 KIAA1211Q6ZU35 1233 aa12.43□□□□□ -0.42
HDAC3-210ENST00000490808 JMYQ8N9B5 988 aa12.43□□□□□ -0.42
HDAC3-210ENST00000490808 PI4K2BQ8TCG2 481 aa12.43□□□□□ -0.42
HDAC3-210ENST00000490808 JARID2Q92833 1246 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-210ENST00000490808 CDC5LQ99459 802 aaKnown RBP12.43□□□□□ -0.42
HDAC3-210ENST00000490808 BCS1LQ9Y276 419 aa12.43□□□□□ -0.42
HDAC3-210ENST00000490808 FPGT-TNNI3KV9GXZ4 949 aa12.43□□□□□ -0.42
HDAC3-210ENST00000490808 LTBP3Q9NS15 1303 aa12.42□□□□□ -0.42
HDAC3-210ENST00000490808 HCLS1P14317 486 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-210ENST00000490808 CHMLP26374 656 aa12.42□□□□□ -0.42
HDAC3-210ENST00000490808 CHRNA5P30532 468 aa12.42□□□□□ -0.42
HDAC3-210ENST00000490808 CTSWP56202 376 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms