RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 DDX46Q7L014 1031 aaKnown RBP10.79□□□□□ -0.68
USP39-216ENST00000490193 BCL2L13Q9BXK5 485 aa10.79□□□□□ -0.68
USP39-216ENST00000490193 CNOT7Q9UIV1 285 aaKnown RBP10.79□□□□□ -0.68
USP39-216ENST00000490193 TSPYL4Q9UJ04 414 aa10.79□□□□□ -0.68
USP39-216ENST00000490193 AKAP11Q9UKA4 1901 aa10.78□□□□□ -0.68
USP39-216ENST00000490193 H7C1D1 291 aa10.78□□□□□ -0.68
USP39-216ENST00000490193 HCLS1P14317 486 aaPredicted RBP10.78□□□□□ -0.68
USP39-216ENST00000490193 KIF12Q96FN5 646 aa10.78□□□□□ -0.68
USP39-216ENST00000490193 CFAP44Q96MT7 982 aa10.78□□□□□ -0.68
USP39-216ENST00000490193 SAGE1Q9NXZ1 904 aa10.78□□□□□ -0.68
USP39-216ENST00000490193 SH3TC1Q8TE82 1336 aa10.78□□□□□ -0.68
USP39-216ENST00000490193 MAPK8IP3Q9UPT6 1336 aa10.78□□□□□ -0.68
USP39-216ENST00000490193 PSME4Q14997 1843 aa10.77□□□□□ -0.68
USP39-216ENST00000490193 FAM155AB1AL88 458 aaPredicted RBP10.77□□□□□ -0.69
USP39-216ENST00000490193 EIF2S2P20042 333 aaKnown RBP10.77□□□□□ -0.69
USP39-216ENST00000490193 RPS12P25398 132 aaKnown RBP10.77□□□□□ -0.69
USP39-216ENST00000490193 HUNKP57058 714 aa10.77□□□□□ -0.69
USP39-216ENST00000490193 TCIRG1Q13488 830 aa10.77□□□□□ -0.69
USP39-216ENST00000490193 DGKZQ13574 1117 aa10.77□□□□□ -0.69
USP39-216ENST00000490193 COPS6Q7L5N1 327 aa10.77□□□□□ -0.69
USP39-216ENST00000490193 MICALL2Q8IY33 904 aa10.77□□□□□ -0.69
USP39-216ENST00000490193 FAM163AQ96GL9 167 aaPredicted RBP10.77□□□□□ -0.69
USP39-216ENST00000490193 ZIC5Q96T25 663 aa10.77□□□□□ -0.69
USP39-216ENST00000490193 ZNF408Q9H9D4 720 aa10.77□□□□□ -0.69
USP39-216ENST00000490193 ZNF609O15014 1411 aa10.76□□□□□ -0.69
USP39-216ENST00000490193 COL4A1P02462 1669 aa10.76□□□□□ -0.69
USP39-216ENST00000490193 SCN9AQ15858 1988 aa10.76□□□□□ -0.69
USP39-216ENST00000490193 SHTN1A0MZ66 631 aa10.76□□□□□ -0.69
USP39-216ENST00000490193 ANXA1P04083 346 aa10.76□□□□□ -0.69
USP39-216ENST00000490193 RGMBQ6NW40 437 aa10.76□□□□□ -0.69
USP39-216ENST00000490193 USP48Q86UV5 1035 aa10.76□□□□□ -0.69
USP39-216ENST00000490193 XAGE3Q8WTP9 111 aa10.76□□□□□ -0.69
USP39-216ENST00000490193 TRMT112Q9UI30 125 aaKnown RBP10.76□□□□□ -0.69
USP39-216ENST00000490193 PSMD14O00487 310 aa10.75□□□□□ -0.69
USP39-216ENST00000490193 SF3B3Q15393 1217 aaKnown RBP10.75□□□□□ -0.69
USP39-216ENST00000490193 WASHC4Q2M389 1173 aa10.75□□□□□ -0.69
USP39-216ENST00000490193 CCDC102AQ96A19 550 aa10.75□□□□□ -0.69
USP39-216ENST00000490193 TSPYL2Q9H2G4 693 aaPredicted RBP10.75□□□□□ -0.69
USP39-216ENST00000490193 GBA2Q9HCG7 927 aaPredicted RBP10.75□□□□□ -0.69
USP39-216ENST00000490193 EGFRP00533 1210 aa10.74□□□□□ -0.69
USP39-216ENST00000490193 RIPK4P57078 832 aa10.74□□□□□ -0.69
USP39-216ENST00000490193 LMOD3Q0VAK6 560 aa10.74□□□□□ -0.69
USP39-216ENST00000490193 SAMD7Q7Z3H4 446 aa10.74□□□□□ -0.69
USP39-216ENST00000490193 KRT26Q7Z3Y9 468 aa10.74□□□□□ -0.69
USP39-216ENST00000490193 C2orf69Q8N8R5 385 aa10.74□□□□□ -0.69
USP39-216ENST00000490193 ISCA1Q9BUE6 129 aa10.74□□□□□ -0.69
USP39-216ENST00000490193 RTL9Q8NET4 1388 aa10.74□□□□□ -0.69
USP39-216ENST00000490193 POTEFA5A3E0 1075 aa10.73□□□□□ -0.69
USP39-216ENST00000490193 AIMP1Q12904 312 aaKnown RBP10.73□□□□□ -0.69
USP39-216ENST00000490193 TBC1D10BQ4KMP7 808 aaPredicted RBP10.73□□□□□ -0.69
USP39-216ENST00000490193 DLK2Q6UY11 383 aa10.73□□□□□ -0.69
USP39-216ENST00000490193 PLBD2Q8NHP8 589 aa10.73□□□□□ -0.69
USP39-216ENST00000490193 CELF1Q92879 486 aaKnown RBP10.73□□□□□ -0.69
USP39-216ENST00000490193 DBNDD1Q9H9R9 158 aa10.73□□□□□ -0.69
USP39-216ENST00000490193 POLLQ9UGP5 575 aa10.73□□□□□ -0.69
USP39-216ENST00000490193 NSFL1CQ9UNZ2 370 aaKnown RBP10.73□□□□□ -0.69
USP39-216ENST00000490193 PAPPA2Q9BXP8 1791 aa10.72□□□□□ -0.69
USP39-216ENST00000490193 ADM5C9JUS6 153 aa10.72□□□□□ -0.69
USP39-216ENST00000490193 CHL1O00533 1208 aa10.72□□□□□ -0.69
USP39-216ENST00000490193 ECE2O60344 883 aa10.72□□□□□ -0.69
USP39-216ENST00000490193 SLC10A3P09131 477 aa10.72□□□□□ -0.69
USP39-216ENST00000490193 HOXB7P09629 217 aa10.72□□□□□ -0.69
USP39-216ENST00000490193 TIE1P35590 1138 aa10.72□□□□□ -0.69
USP39-216ENST00000490193 TMPOP42166 694 aaKnown RBP10.72□□□□□ -0.69
USP39-216ENST00000490193 GPSM2P81274 684 aa10.72□□□□□ -0.69
USP39-216ENST00000490193 KIF23Q02241 960 aaPredicted RBP10.72□□□□□ -0.69
USP39-216ENST00000490193 TRIM28Q13263 835 aaKnown RBP10.72□□□□□ -0.69
USP39-216ENST00000490193 DCPSQ96C86 337 aaKnown RBP10.72□□□□□ -0.69
USP39-216ENST00000490193 EYA3Q99504 573 aa10.72□□□□□ -0.69
USP39-216ENST00000490193 BMP2KQ9NSY1 1161 aaPredicted RBP10.72□□□□□ -0.69
USP39-216ENST00000490193 RNF186Q9NXI6 227 aa10.72□□□□□ -0.69
USP39-216ENST00000490193 PODXL2Q9NZ53 605 aa10.72□□□□□ -0.69
USP39-216ENST00000490193 C6orf229H3BNL8 230 aa10.71□□□□□ -0.69
USP39-216ENST00000490193 VIL1P09327 827 aaKnown RBP10.71□□□□□ -0.69
USP39-216ENST00000490193 ZNF157P51786 506 aaPredicted RBP10.71□□□□□ -0.69
USP39-216ENST00000490193 KIF4BQ2VIQ3 1234 aa10.71□□□□□ -0.69
USP39-216ENST00000490193 ANKRD13DQ6ZTN6 518 aa10.71□□□□□ -0.69
USP39-216ENST00000490193 TBC1D16Q8TBP0 767 aa10.71□□□□□ -0.69
USP39-216ENST00000490193 NECTIN2Q92692 538 aa10.71□□□□□ -0.69
USP39-216ENST00000490193 FAM89AQ96GI7 184 aa10.71□□□□□ -0.69
USP39-216ENST00000490193 CHPF2Q9P2E5 772 aa10.71□□□□□ -0.69
USP39-216ENST00000490193 ZNF646O15015 1829 aaPredicted RBP10.7□□□□□ -0.7
USP39-216ENST00000490193 RIMBP2O15034 1052 aa10.7□□□□□ -0.7
USP39-216ENST00000490193 TRPA1O75762 1119 aa10.7□□□□□ -0.7
USP39-216ENST00000490193 ZNF280AP59817 542 aaPredicted RBP10.7□□□□□ -0.7
USP39-216ENST00000490193 FKBP1BP68106 108 aa10.7□□□□□ -0.7
USP39-216ENST00000490193 KRT24Q2M2I5 525 aa10.7□□□□□ -0.7
USP39-216ENST00000490193 SULF1Q8IWU6 871 aa10.7□□□□□ -0.7
USP39-216ENST00000490193 CSRNP1Q96S65 589 aa10.7□□□□□ -0.7
USP39-216ENST00000490193 KCNQ5Q9NR82 932 aa10.7□□□□□ -0.7
USP39-216ENST00000490193 GGA3Q9NZ52 723 aa10.7□□□□□ -0.7
USP39-216ENST00000490193 DBF4Q9UBU7 674 aaPredicted RBP10.7□□□□□ -0.7
USP39-216ENST00000490193 PITPNM2Q9BZ72 1349 aa10.69□□□□□ -0.7
USP39-216ENST00000490193 RPS8P62241 208 aaKnown RBP10.69□□□□□ -0.7
USP39-216ENST00000490193 DOK7Q18PE1 504 aa10.69□□□□□ -0.7
USP39-216ENST00000490193 HDGFL1Q5TGJ6 251 aa10.69□□□□□ -0.7
USP39-216ENST00000490193 PRPF38BQ5VTL8 546 aaKnown RBP10.69□□□□□ -0.7
USP39-216ENST00000490193 CTU1Q7Z7A3 348 aaKnown RBP10.69□□□□□ -0.7
USP39-216ENST00000490193 AGBL3Q8NEM8 1001 aa10.69□□□□□ -0.7
USP39-216ENST00000490193 CDCA5Q96FF9 252 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms