RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 ZNF521Q96K83 1311 aa29.38■■■□□ 2.29
COL9A3-213ENST00000489045 SCN9AQ15858 1988 aa29.37■■■□□ 2.29
COL9A3-213ENST00000489045 TMEM88BA6NKF7 163 aa29.37■■■□□ 2.29
COL9A3-213ENST00000489045 UFL1O94874 794 aa29.37■■■□□ 2.29
COL9A3-213ENST00000489045 TRPM7Q96QT4 1865 aa29.37■■■□□ 2.29
COL9A3-213ENST00000489045 ECE2O60344 883 aa29.36■■■□□ 2.29
COL9A3-213ENST00000489045 LINS1Q8NG48 757 aa29.36■■■□□ 2.29
COL9A3-213ENST00000489045 CDC5LQ99459 802 aaKnown RBP29.36■■■□□ 2.29
COL9A3-213ENST00000489045 GREM2Q9H772 168 aa29.36■■■□□ 2.29
COL9A3-213ENST00000489045 GGA1Q9UJY5 639 aa29.36■■■□□ 2.29
COL9A3-213ENST00000489045 RTL9Q8NET4 1388 aa29.36■■■□□ 2.29
COL9A3-213ENST00000489045 DOK7Q18PE1 504 aa29.35■■■□□ 2.29
COL9A3-213ENST00000489045 PSME4Q14997 1843 aa29.34■■■□□ 2.29
COL9A3-213ENST00000489045 PSMD14O00487 310 aa29.34■■■□□ 2.29
COL9A3-213ENST00000489045 ZC3H12CQ9C0D7 883 aaKnown RBP29.34■■■□□ 2.29
COL9A3-213ENST00000489045 CNTNAP1P78357 1384 aa29.34■■■□□ 2.29
COL9A3-213ENST00000489045 CASP7P55210 303 aa29.33■■■□□ 2.29
COL9A3-213ENST00000489045 ZBTB12Q9Y330 459 aaPredicted RBP29.33■■■□□ 2.29
COL9A3-213ENST00000489045 XDHP47989 1333 aa29.33■■■□□ 2.29
COL9A3-213ENST00000489045 F6X3S4 739 aa29.32■■■□□ 2.28
COL9A3-213ENST00000489045 PLA2G12BQ9BX93 195 aa29.32■■■□□ 2.28
COL9A3-213ENST00000489045 KCNQ5Q9NR82 932 aa29.32■■■□□ 2.28
COL9A3-213ENST00000489045 SHTN1A0MZ66 631 aa29.31■■■□□ 2.28
COL9A3-213ENST00000489045 CNOT7Q9UIV1 285 aaKnown RBP29.31■■■□□ 2.28
COL9A3-213ENST00000489045 FMR1Q06787 632 aaKnown RBP eCLIP29.3■■■□□ 2.28
COL9A3-213ENST00000489045 MICALL2Q8IY33 904 aa29.3■■■□□ 2.28
COL9A3-213ENST00000489045 BSDC1Q9NW68 430 aaPredicted RBP29.3■■■□□ 2.28
COL9A3-213ENST00000489045 G3V3G9 751 aa29.29■■■□□ 2.28
COL9A3-213ENST00000489045 DCAF8Q5TAQ9 597 aa29.29■■■□□ 2.28
COL9A3-213ENST00000489045 TRPM4Q8TD43 1214 aa29.29■■■□□ 2.28
COL9A3-213ENST00000489045 BEND3Q5T5X7 828 aa29.28■■■□□ 2.28
COL9A3-213ENST00000489045 DPF2Q92785 391 aa29.28■■■□□ 2.28
COL9A3-213ENST00000489045 MINPP1Q9UNW1 487 aa29.28■■■□□ 2.28
COL9A3-213ENST00000489045 H7C1D1 291 aa29.27■■■□□ 2.28
COL9A3-213ENST00000489045 TRAF5O00463 557 aa29.27■■■□□ 2.28
COL9A3-213ENST00000489045 ATP2B4P23634 1241 aa29.27■■■□□ 2.28
COL9A3-213ENST00000489045 HIRAP54198 1017 aaPredicted RBP29.27■■■□□ 2.28
COL9A3-213ENST00000489045 FAM161AQ3B820 660 aa29.27■■■□□ 2.28
COL9A3-213ENST00000489045 HSPA1AP0DMV8 641 aaKnown RBP29.26■■■□□ 2.27
COL9A3-213ENST00000489045 HSPA1BP0DMV9 641 aaKnown RBP29.26■■■□□ 2.27
COL9A3-213ENST00000489045 ITGA6P23229 1130 aa29.26■■■□□ 2.27
COL9A3-213ENST00000489045 RPS12P25398 132 aaKnown RBP29.26■■■□□ 2.27
COL9A3-213ENST00000489045 CSF1RP07333 972 aa29.25■■■□□ 2.27
COL9A3-213ENST00000489045 IGHMBP2P38935 993 aaKnown RBP29.25■■■□□ 2.27
COL9A3-213ENST00000489045 PGAP2Q9UHJ9 254 aa29.25■■■□□ 2.27
COL9A3-213ENST00000489045 A0A1B0GUL6 1792 aa29.24■■■□□ 2.27
COL9A3-213ENST00000489045 WTIPA6NIX2 430 aaPredicted RBP29.24■■■□□ 2.27
COL9A3-213ENST00000489045 ZC3H15Q8WU90 426 aaKnown RBP29.24■■■□□ 2.27
COL9A3-213ENST00000489045 ABT1Q9ULW3 272 aaKnown RBP29.24■■■□□ 2.27
COL9A3-213ENST00000489045 RASSF10A6NK89 507 aa29.23■■■□□ 2.27
COL9A3-213ENST00000489045 VIL1P09327 827 aaKnown RBP29.23■■■□□ 2.27
COL9A3-213ENST00000489045 VEGFBP49765 207 aa29.23■■■□□ 2.27
COL9A3-213ENST00000489045 SAMD7Q7Z3H4 446 aa29.23■■■□□ 2.27
COL9A3-213ENST00000489045 MED23Q9ULK4 1368 aa29.23■■■□□ 2.27
COL9A3-213ENST00000489045 E9PSI1 815 aa29.22■■■□□ 2.27
COL9A3-213ENST00000489045 CCT4P50991 539 aaKnown RBP29.22■■■□□ 2.27
COL9A3-213ENST00000489045 GLIS2Q9BZE0 524 aaPredicted RBP29.22■■■□□ 2.27
COL9A3-213ENST00000489045 POLR2AP24928 1970 aaKnown RBP29.22■■■□□ 2.27
COL9A3-213ENST00000489045 ZNF646O15015 1829 aaPredicted RBP29.22■■■□□ 2.27
COL9A3-213ENST00000489045 DEFB115Q30KQ5 88 aa29.21■■■□□ 2.27
COL9A3-213ENST00000489045 TBC1D10BQ4KMP7 808 aaPredicted RBP29.21■■■□□ 2.27
COL9A3-213ENST00000489045 FOXO4P98177 505 aa29.2■■■□□ 2.26
COL9A3-213ENST00000489045 IFFO2Q5TF58 517 aa29.2■■■□□ 2.26
COL9A3-213ENST00000489045 CST9Q5W186 159 aa29.2■■■□□ 2.26
COL9A3-213ENST00000489045 SLC4A10Q6U841 1118 aa29.2■■■□□ 2.26
COL9A3-213ENST00000489045 MPHOSPH8Q99549 860 aa29.2■■■□□ 2.26
COL9A3-213ENST00000489045 ZNF609O15014 1411 aa29.2■■■□□ 2.26
COL9A3-213ENST00000489045 GRM8O00222 908 aa29.19■■■□□ 2.26
COL9A3-213ENST00000489045 EGFRP00533 1210 aa29.19■■■□□ 2.26
COL9A3-213ENST00000489045 ANKRD18BA2A2Z9 1011 aa29.18■■■□□ 2.26
COL9A3-213ENST00000489045 SLFN5Q08AF3 891 aa29.18■■■□□ 2.26
COL9A3-213ENST00000489045 PODNQ7Z5L7 613 aa29.18■■■□□ 2.26
COL9A3-213ENST00000489045 ALDH1L1O75891 902 aa29.17■■■□□ 2.26
COL9A3-213ENST00000489045 RBM26Q5T8P6 1007 aaKnown RBP29.17■■■□□ 2.26
COL9A3-213ENST00000489045 RSBN1LQ6PCB5 846 aaPredicted RBP29.17■■■□□ 2.26
COL9A3-213ENST00000489045 CDC37L1Q7L3B6 337 aa29.17■■■□□ 2.26
COL9A3-213ENST00000489045 SRCIN1Q9C0H9 1055 aa29.17■■■□□ 2.26
COL9A3-213ENST00000489045 ANKRD2Q9GZV1 360 aa29.17■■■□□ 2.26
COL9A3-213ENST00000489045 LEMD3Q9Y2U8 911 aa29.17■■■□□ 2.26
COL9A3-213ENST00000489045 CHMP3Q9Y3E7 222 aa29.17■■■□□ 2.26
COL9A3-213ENST00000489045 CELF2O95319 508 aaKnown RBP29.16■■■□□ 2.26
COL9A3-213ENST00000489045 MRPL50Q8N5N7 158 aaKnown RBP29.16■■■□□ 2.26
COL9A3-213ENST00000489045 C9orf78Q9NZ63 289 aaPredicted RBP29.16■■■□□ 2.26
COL9A3-213ENST00000489045 THSD7BQ9C0I4 1608 aa29.16■■■□□ 2.26
COL9A3-213ENST00000489045 CCER2I3L3R5 266 aa29.15■■■□□ 2.26
COL9A3-213ENST00000489045 IFIT5Q13325 482 aaKnown RBP29.15■■■□□ 2.26
COL9A3-213ENST00000489045 KIF4BQ2VIQ3 1234 aa29.15■■■□□ 2.26
COL9A3-213ENST00000489045 EPHA10Q5JZY3 1008 aa29.15■■■□□ 2.26
COL9A3-213ENST00000489045 COL13A1Q5TAT6 717 aaPredicted RBP29.15■■■□□ 2.26
COL9A3-213ENST00000489045 AGBL3Q8NEM8 1001 aa29.15■■■□□ 2.26
COL9A3-213ENST00000489045 ZNF804BA4D1E1 1349 aa29.15■■■□□ 2.26
COL9A3-213ENST00000489045 USP17L3A6NCW0 530 aa29.14■■■□□ 2.26
COL9A3-213ENST00000489045 USP17L4A6NCW7 530 aa29.14■■■□□ 2.26
COL9A3-213ENST00000489045 CHRNDQ07001 517 aa29.14■■■□□ 2.26
COL9A3-213ENST00000489045 LMBR1LQ6UX01 489 aa29.14■■■□□ 2.26
COL9A3-213ENST00000489045 USP17L1Q7RTZ2 530 aa29.14■■■□□ 2.26
COL9A3-213ENST00000489045 TXNRD3Q86VQ6 643 aa29.14■■■□□ 2.26
COL9A3-213ENST00000489045 TLL2Q9Y6L7 1015 aa29.14■■■□□ 2.26
COL9A3-213ENST00000489045 WDR33Q9C0J8 1336 aaKnown RBP29.14■■■□□ 2.25
COL9A3-213ENST00000489045 USP48Q86UV5 1035 aa29.13■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 125.2 ms