RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 PLD4Q96BZ4 506 aa9.31□□□□□ -0.92
PTPN4-212ENST00000488896 GGNBP2Q9H3C7 697 aa9.31□□□□□ -0.92
PTPN4-212ENST00000488896 ELP3Q9H9T3 547 aa9.31□□□□□ -0.92
PTPN4-212ENST00000488896 ABI2Q9NYB9 513 aaPredicted RBP9.31□□□□□ -0.92
PTPN4-212ENST00000488896 FRRS1LQ9P0K9 344 aa9.31□□□□□ -0.92
PTPN4-212ENST00000488896 POLIQ9UNA4 740 aa9.31□□□□□ -0.92
PTPN4-212ENST00000488896 FAM13AO94988 1023 aa9.3□□□□□ -0.92
PTPN4-212ENST00000488896 CYP2E1P05181 493 aaPredicted RBP9.3□□□□□ -0.92
PTPN4-212ENST00000488896 SOX18P35713 384 aa9.3□□□□□ -0.92
PTPN4-212ENST00000488896 GRIK4Q16099 956 aa9.3□□□□□ -0.92
PTPN4-212ENST00000488896 COL13A1Q5TAT6 717 aaPredicted RBP9.3□□□□□ -0.92
PTPN4-212ENST00000488896 GDF6Q6KF10 455 aaPredicted RBP9.3□□□□□ -0.92
PTPN4-212ENST00000488896 ALKBH2Q6NS38 261 aa9.3□□□□□ -0.92
PTPN4-212ENST00000488896 RBSNQ9H1K0 784 aa9.3□□□□□ -0.92
PTPN4-212ENST00000488896 A0A0A0MRY4 1105 aa9.29□□□□□ -0.92
PTPN4-212ENST00000488896 APBA3O96018 575 aa9.29□□□□□ -0.92
PTPN4-212ENST00000488896 MZF1P28698 734 aaPredicted RBP9.29□□□□□ -0.92
PTPN4-212ENST00000488896 HYAL2Q12891 473 aa9.29□□□□□ -0.92
PTPN4-212ENST00000488896 SF3B2Q13435 895 aaKnown RBP9.29□□□□□ -0.92
PTPN4-212ENST00000488896 GRIK5Q16478 980 aa9.29□□□□□ -0.92
PTPN4-212ENST00000488896 KANSL3Q9P2N6 904 aa9.29□□□□□ -0.92
PTPN4-212ENST00000488896 RPLP1P05386 114 aaKnown RBP9.28□□□□□ -0.92
PTPN4-212ENST00000488896 RAC1P63000 192 aa9.28□□□□□ -0.92
PTPN4-212ENST00000488896 MSL1Q68DK7 614 aa9.28□□□□□ -0.92
PTPN4-212ENST00000488896 PDE12Q6L8Q7 609 aaKnown RBP9.28□□□□□ -0.92
PTPN4-212ENST00000488896 WFDC8Q8IUA0 241 aa9.28□□□□□ -0.92
PTPN4-212ENST00000488896 SPACA7Q96KW9 195 aa9.28□□□□□ -0.92
PTPN4-212ENST00000488896 CNTN3Q9P232 1028 aa9.28□□□□□ -0.92
PTPN4-212ENST00000488896 H3BRB1 525 aa9.27□□□□□ -0.93
PTPN4-212ENST00000488896 PROCP04070 461 aa9.27□□□□□ -0.93
PTPN4-212ENST00000488896 NCAPG2Q86XI2 1143 aa9.27□□□□□ -0.93
PTPN4-212ENST00000488896 TUT1Q9H6E5 874 aaKnown RBP9.27□□□□□ -0.93
PTPN4-212ENST00000488896 CCDC87Q9NVE4 849 aa9.27□□□□□ -0.93
PTPN4-212ENST00000488896 NPR3P17342 541 aa9.26□□□□□ -0.93
PTPN4-212ENST00000488896 ATP11AP98196 1134 aa9.26□□□□□ -0.93
PTPN4-212ENST00000488896 PDE4CQ08493 712 aa9.26□□□□□ -0.93
PTPN4-212ENST00000488896 GLYCTKQ8IVS8 523 aa9.26□□□□□ -0.93
PTPN4-212ENST00000488896 TRIM33Q9UPN9 1127 aa9.26□□□□□ -0.93
PTPN4-212ENST00000488896 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.26□□□□□ -0.93
PTPN4-212ENST00000488896 FZD6O60353 706 aa9.25□□□□□ -0.93
PTPN4-212ENST00000488896 ICMTO60725 284 aa9.25□□□□□ -0.93
PTPN4-212ENST00000488896 HOXD8P13378 290 aaPredicted RBP9.25□□□□□ -0.93
PTPN4-212ENST00000488896 IL22RA1Q8N6P7 574 aa9.25□□□□□ -0.93
PTPN4-212ENST00000488896 C1orf127Q8N9H9 656 aa9.25□□□□□ -0.93
PTPN4-212ENST00000488896 TTC9Q92623 222 aa9.25□□□□□ -0.93
PTPN4-212ENST00000488896 CES1P23141 567 aa9.24□□□□□ -0.93
PTPN4-212ENST00000488896 CEP135Q66GS9 1140 aa9.24□□□□□ -0.93
PTPN4-212ENST00000488896 SHISA2Q6UWI4 295 aa9.24□□□□□ -0.93
PTPN4-212ENST00000488896 LACRTQ9GZZ8 138 aa9.24□□□□□ -0.93
PTPN4-212ENST00000488896 ELNP15502 786 aa9.23□□□□□ -0.93
PTPN4-212ENST00000488896 FMR1NBQ8N0W7 255 aaPredicted RBP9.23□□□□□ -0.93
PTPN4-212ENST00000488896 RASSF4Q9H2L5 321 aa9.23□□□□□ -0.93
PTPN4-212ENST00000488896 EGFL7Q9UHF1 273 aa9.23□□□□□ -0.93
PTPN4-212ENST00000488896 CDC25BP30305 580 aa9.22□□□□□ -0.93
PTPN4-212ENST00000488896 GATA4P43694 442 aa9.22□□□□□ -0.93
PTPN4-212ENST00000488896 BAG6P46379 1132 aa9.22□□□□□ -0.93
PTPN4-212ENST00000488896 XKR5Q6UX68 686 aa9.22□□□□□ -0.93
PTPN4-212ENST00000488896 NACC1Q96RE7 527 aa9.22□□□□□ -0.93
PTPN4-212ENST00000488896 SMNDC1O75940 238 aaKnown RBP eCLIP9.21□□□□□ -0.94
PTPN4-212ENST00000488896 ACPPP15309 386 aa9.21□□□□□ -0.94
PTPN4-212ENST00000488896 SELPP16109 830 aa9.21□□□□□ -0.94
PTPN4-212ENST00000488896 USP5P45974 858 aa9.21□□□□□ -0.94
PTPN4-212ENST00000488896 TXNDC2Q86VQ3 553 aa9.21□□□□□ -0.94
PTPN4-212ENST00000488896 FOXD3Q9UJU5 478 aaPredicted RBP9.21□□□□□ -0.94
PTPN4-212ENST00000488896 USP21Q9UK80 565 aa9.21□□□□□ -0.94
PTPN4-212ENST00000488896 PHACTR2O75167 634 aa9.2□□□□□ -0.94
PTPN4-212ENST00000488896 TRPA1O75762 1119 aa9.2□□□□□ -0.94
PTPN4-212ENST00000488896 KIF4AO95239 1232 aa9.2□□□□□ -0.94
PTPN4-212ENST00000488896 DOC2BQ14184 412 aa9.2□□□□□ -0.94
PTPN4-212ENST00000488896 CEP120Q8N960 986 aa9.2□□□□□ -0.94
PTPN4-212ENST00000488896 CCER1Q8TC90 406 aaPredicted RBP9.2□□□□□ -0.94
PTPN4-212ENST00000488896 BRPF3Q9ULD4 1205 aa9.2□□□□□ -0.94
PTPN4-212ENST00000488896 DEAF1O75398 565 aaPredicted RBP9.19□□□□□ -0.94
PTPN4-212ENST00000488896 TNFRSF21O75509 655 aa9.19□□□□□ -0.94
PTPN4-212ENST00000488896 FURINP09958 794 aa9.19□□□□□ -0.94
PTPN4-212ENST00000488896 EHHADHQ08426 723 aa9.19□□□□□ -0.94
PTPN4-212ENST00000488896 TXNDC11Q6PKC3 985 aa9.19□□□□□ -0.94
PTPN4-212ENST00000488896 ILDR2Q71H61 639 aa9.19□□□□□ -0.94
PTPN4-212ENST00000488896 FBXO11Q86XK2 927 aa9.19□□□□□ -0.94
PTPN4-212ENST00000488896 PBX4Q9BYU1 374 aa9.19□□□□□ -0.94
PTPN4-212ENST00000488896 CHRDQ9H2X0 955 aa9.19□□□□□ -0.94
PTPN4-212ENST00000488896 C9orf172C9J069 976 aa9.18□□□□□ -0.94
PTPN4-212ENST00000488896 EREGO14944 169 aa9.18□□□□□ -0.94
PTPN4-212ENST00000488896 ECM1Q16610 540 aa9.18□□□□□ -0.94
PTPN4-212ENST00000488896 ADAMTSL4Q6UY14 1074 aa9.18□□□□□ -0.94
PTPN4-212ENST00000488896 GJD3Q8N144 294 aa9.18□□□□□ -0.94
PTPN4-212ENST00000488896 DTWD1Q8N5C7 304 aa9.18□□□□□ -0.94
PTPN4-212ENST00000488896 SALL4Q9UJQ4 1053 aa9.18□□□□□ -0.94
PTPN4-212ENST00000488896 LINC01387J3KSC0 135 aa9.17□□□□□ -0.94
PTPN4-212ENST00000488896 SNX29Q8TEQ0 813 aa9.17□□□□□ -0.94
PTPN4-212ENST00000488896 PMEPA1Q969W9 287 aa9.17□□□□□ -0.94
PTPN4-212ENST00000488896 SH2B1Q9NRF2 756 aaPredicted RBP9.17□□□□□ -0.94
PTPN4-212ENST00000488896 PPME1Q9Y570 386 aa9.17□□□□□ -0.94
PTPN4-212ENST00000488896 POLR3DP05423 398 aaPredicted RBP9.16□□□□□ -0.94
PTPN4-212ENST00000488896 CDC27P30260 824 aa9.16□□□□□ -0.94
PTPN4-212ENST00000488896 ARHGAP4P98171 946 aa9.16□□□□□ -0.94
PTPN4-212ENST00000488896 LENG1Q96BZ8 264 aaPredicted RBP9.16□□□□□ -0.94
PTPN4-212ENST00000488896 HHIPQ96QV1 700 aa9.16□□□□□ -0.94
PTPN4-212ENST00000488896 POP1Q99575 1024 aaKnown RBP9.16□□□□□ -0.94
PTPN4-212ENST00000488896 FAM177BA6PVY3 158 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms