RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 GGNBP2Q9H3C7 697 aa6.3□□□□□ -1.4
PTCD3-216ENST00000487043 SEMA6BQ9H3T3 888 aa6.3□□□□□ -1.4
PTCD3-216ENST00000487043 ZDHHC3Q9NYG2 299 aa6.3□□□□□ -1.4
PTCD3-216ENST00000487043 MARK1Q9P0L2 795 aa6.3□□□□□ -1.4
PTCD3-216ENST00000487043 VTI1BQ9UEU0 232 aa6.3□□□□□ -1.4
PTCD3-216ENST00000487043 SCAMP3O14828 347 aaKnown RBP6.29□□□□□ -1.4
PTCD3-216ENST00000487043 MICAL2O94851 1124 aa6.29□□□□□ -1.4
PTCD3-216ENST00000487043 FAM157BP0CG42 384 aa6.29□□□□□ -1.4
PTCD3-216ENST00000487043 ERCC5P28715 1186 aaPredicted RBP6.29□□□□□ -1.4
PTCD3-216ENST00000487043 GATA4P43694 442 aa6.29□□□□□ -1.4
PTCD3-216ENST00000487043 HDLBPQ00341 1268 aaKnown RBP6.29□□□□□ -1.4
PTCD3-216ENST00000487043 ORC1Q13415 861 aa6.29□□□□□ -1.4
PTCD3-216ENST00000487043 LDLRAD1Q5T700 205 aa6.29□□□□□ -1.4
PTCD3-216ENST00000487043 ZNF468Q5VIY5 522 aaPredicted RBP6.29□□□□□ -1.4
PTCD3-216ENST00000487043 ALG1LQ6GMV1 187 aa6.29□□□□□ -1.4
PTCD3-216ENST00000487043 TMC4Q7Z404 712 aa6.29□□□□□ -1.4
PTCD3-216ENST00000487043 C7orf43Q8WVR3 580 aa6.29□□□□□ -1.4
PTCD3-216ENST00000487043 CSRNP1Q96S65 589 aa6.29□□□□□ -1.4
PTCD3-216ENST00000487043 ZIC5Q96T25 663 aa6.29□□□□□ -1.4
PTCD3-216ENST00000487043 FAM13BQ9NYF5 915 aa6.29□□□□□ -1.4
PTCD3-216ENST00000487043 SPATA31C1P0DKV0 1188 aa6.28□□□□□ -1.4
PTCD3-216ENST00000487043 ALAS2P22557 587 aa6.28□□□□□ -1.4
PTCD3-216ENST00000487043 ITGAEP38570 1179 aa6.28□□□□□ -1.4
PTCD3-216ENST00000487043 ZC3H6P61129 1189 aaKnown RBP6.28□□□□□ -1.4
PTCD3-216ENST00000487043 HIF1AQ16665 826 aa6.28□□□□□ -1.4
PTCD3-216ENST00000487043 ZNF280CQ8ND82 737 aa6.28□□□□□ -1.4
PTCD3-216ENST00000487043 PIK3R5Q8WYR1 880 aa6.28□□□□□ -1.4
PTCD3-216ENST00000487043 TRIM11Q96F44 468 aa6.28□□□□□ -1.4
PTCD3-216ENST00000487043 HSH2DQ96JZ2 352 aa6.28□□□□□ -1.4
PTCD3-216ENST00000487043 SUSD3Q96L08 255 aa6.28□□□□□ -1.4
PTCD3-216ENST00000487043 C8orf37Q96NL8 207 aa6.28□□□□□ -1.4
PTCD3-216ENST00000487043 NEUROD4Q9HD90 331 aa6.28□□□□□ -1.4
PTCD3-216ENST00000487043 MYO15BQ96JP2 1530 aa6.28□□□□□ -1.4
PTCD3-216ENST00000487043 SPDYE3A6NKU9 549 aa6.27□□□□□ -1.41
PTCD3-216ENST00000487043 TGFBR3LH3BV60 316 aa6.27□□□□□ -1.41
PTCD3-216ENST00000487043 EIF1AYO14602 144 aaKnown RBP6.27□□□□□ -1.41
PTCD3-216ENST00000487043 USP20Q9Y2K6 914 aa6.27□□□□□ -1.41
PTCD3-216ENST00000487043 OPLAHO14841 1288 aa6.26□□□□□ -1.41
PTCD3-216ENST00000487043 RPLP1P05386 114 aaKnown RBP6.26□□□□□ -1.41
PTCD3-216ENST00000487043 NEFLP07196 543 aa6.26□□□□□ -1.41
PTCD3-216ENST00000487043 IDH3AP50213 366 aa6.26□□□□□ -1.41
PTCD3-216ENST00000487043 NAALADL2Q58DX5 795 aa6.26□□□□□ -1.41
PTCD3-216ENST00000487043 PRRT3Q5FWE3 981 aa6.26□□□□□ -1.41
PTCD3-216ENST00000487043 ZMYM1Q5SVZ6 1142 aa6.26□□□□□ -1.41
PTCD3-216ENST00000487043 SAMD5Q5TGI4 173 aa6.26□□□□□ -1.41
PTCD3-216ENST00000487043 SYT9Q86SS6 491 aa6.26□□□□□ -1.41
PTCD3-216ENST00000487043 STRN4Q9NRL3 753 aa6.26□□□□□ -1.41
PTCD3-216ENST00000487043 ELOA3CA0A087WX78 387 aaPredicted RBP6.25□□□□□ -1.41
PTCD3-216ENST00000487043 ELOA3DA6NLF2 546 aaPredicted RBP6.25□□□□□ -1.41
PTCD3-216ENST00000487043 APBA3O96018 575 aa6.25□□□□□ -1.41
PTCD3-216ENST00000487043 GNA15P30679 374 aa6.25□□□□□ -1.41
PTCD3-216ENST00000487043 LAMC2Q13753 1193 aa6.25□□□□□ -1.41
PTCD3-216ENST00000487043 ELOA3BQ3SY89 546 aa6.25□□□□□ -1.41
PTCD3-216ENST00000487043 LRRC69Q6ZNQ3 347 aa6.25□□□□□ -1.41
PTCD3-216ENST00000487043 CMTR1Q8N1G2 835 aaKnown RBP6.25□□□□□ -1.41
PTCD3-216ENST00000487043 ELOA3Q8NG57 546 aa6.25□□□□□ -1.41
PTCD3-216ENST00000487043 DRC1Q96MC2 740 aa6.25□□□□□ -1.41
PTCD3-216ENST00000487043 ANKIB1Q9P2G1 1089 aa6.25□□□□□ -1.41
PTCD3-216ENST00000487043 DMGDHQ9UI17 866 aaKnown RBP6.25□□□□□ -1.41
PTCD3-216ENST00000487043 NACADO15069 1562 aa6.24□□□□□ -1.41
PTCD3-216ENST00000487043 EFSO43281 561 aa6.24□□□□□ -1.41
PTCD3-216ENST00000487043 CPNE3O75131 537 aaKnown RBP6.24□□□□□ -1.41
PTCD3-216ENST00000487043 NT5DC4Q86YG4 428 aa6.24□□□□□ -1.41
PTCD3-216ENST00000487043 FBF1Q8TES7 1133 aa6.24□□□□□ -1.41
PTCD3-216ENST00000487043 SREK1Q8WXA9 508 aaKnown RBP6.24□□□□□ -1.41
PTCD3-216ENST00000487043 RNF34Q969K3 372 aa6.24□□□□□ -1.41
PTCD3-216ENST00000487043 DNAJC25Q9H1X3 360 aa6.24□□□□□ -1.41
PTCD3-216ENST00000487043 PPP1R1BQ9UD71 204 aaPredicted RBP6.24□□□□□ -1.41
PTCD3-216ENST00000487043 FOXD3Q9UJU5 478 aaPredicted RBP6.24□□□□□ -1.41
PTCD3-216ENST00000487043 SCO2A0A1W2PP80 73 aa6.23□□□□□ -1.41
PTCD3-216ENST00000487043 ITGB7P26010 798 aa6.23□□□□□ -1.41
PTCD3-216ENST00000487043 ARSDP51689 593 aa6.23□□□□□ -1.41
PTCD3-216ENST00000487043 IER5Q5VY09 327 aa6.23□□□□□ -1.41
PTCD3-216ENST00000487043 USPL1Q5W0Q7 1092 aa6.23□□□□□ -1.41
PTCD3-216ENST00000487043 ZNF438Q7Z4V0 828 aa6.23□□□□□ -1.41
PTCD3-216ENST00000487043 BTLAQ7Z6A9 289 aa6.23□□□□□ -1.41
PTCD3-216ENST00000487043 METTL16Q86W50 562 aaKnown RBP6.23□□□□□ -1.41
PTCD3-216ENST00000487043 SPG7Q9UQ90 795 aa6.23□□□□□ -1.41
PTCD3-216ENST00000487043 FNDC3AQ9Y2H6 1198 aaKnown RBP6.23□□□□□ -1.41
PTCD3-216ENST00000487043 RTCBQ9Y3I0 505 aaKnown RBP6.23□□□□□ -1.41
PTCD3-216ENST00000487043 GPC6Q9Y625 555 aaPredicted RBP6.23□□□□□ -1.41
PTCD3-216ENST00000487043 AK5Q9Y6K8 562 aa6.23□□□□□ -1.41
PTCD3-216ENST00000487043 UBAP1LF5GYI3 381 aa6.22□□□□□ -1.41
PTCD3-216ENST00000487043 FAM229AH3BQW9 127 aa6.22□□□□□ -1.41
PTCD3-216ENST00000487043 M0R082 166 aa6.22□□□□□ -1.41
PTCD3-216ENST00000487043 TNFRSF21O75509 655 aa6.22□□□□□ -1.41
PTCD3-216ENST00000487043 INPP5BP32019 993 aa6.22□□□□□ -1.41
PTCD3-216ENST00000487043 ZNF76P36508 570 aa6.22□□□□□ -1.41
PTCD3-216ENST00000487043 FANCCQ00597 558 aa6.22□□□□□ -1.41
PTCD3-216ENST00000487043 RAD51AP2Q09MP3 1159 aa6.22□□□□□ -1.41
PTCD3-216ENST00000487043 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.22□□□□□ -1.414e-81■■■■■ 116.8
PTCD3-216ENST00000487043 ZNF417Q8TAU3 575 aa6.22□□□□□ -1.41
PTCD3-216ENST00000487043 FRMD6Q96NE9 622 aa6.22□□□□□ -1.41
PTCD3-216ENST00000487043 ZNF587Q96SQ5 575 aaPredicted RBP6.22□□□□□ -1.41
PTCD3-216ENST00000487043 METTL5Q9NRN9 209 aaKnown RBP6.22□□□□□ -1.41
PTCD3-216ENST00000487043 SIN3BO75182 1162 aa6.21□□□□□ -1.42
PTCD3-216ENST00000487043 EIF4BP23588 611 aaKnown RBP6.21□□□□□ -1.42
PTCD3-216ENST00000487043 TRIM28Q13263 835 aaKnown RBP6.21□□□□□ -1.42
PTCD3-216ENST00000487043 NEUROD1Q13562 356 aa6.21□□□□□ -1.42
PTCD3-216ENST00000487043 TRIP4Q15650 581 aaPredicted RBP6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms