RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 KLHDC4Q8TBB5 520 aa15.92■□□□□ 0.14
HDAC6-229ENST00000486665 ZNF594Q96JF6 807 aaPredicted RBP15.92■□□□□ 0.14
HDAC6-229ENST00000486665 GTF3C3Q9Y5Q9 886 aa15.92■□□□□ 0.14
HDAC6-229ENST00000486665 IFIT5Q13325 482 aaKnown RBP15.91■□□□□ 0.14
HDAC6-229ENST00000486665 CCDC57Q2TAC2 916 aa15.91■□□□□ 0.14
HDAC6-229ENST00000486665 OLFM4Q6UX06 510 aa15.91■□□□□ 0.14
HDAC6-229ENST00000486665 PA2G4Q9UQ80 394 aaKnown RBP15.91■□□□□ 0.14
HDAC6-229ENST00000486665 LTBP3Q9NS15 1303 aa15.91■□□□□ 0.14
HDAC6-229ENST00000486665 LAMB2P55268 1798 aa15.9■□□□□ 0.14
HDAC6-229ENST00000486665 RTL9Q8NET4 1388 aa15.9■□□□□ 0.14
HDAC6-229ENST00000486665 ANKRD18BA2A2Z9 1011 aa15.9■□□□□ 0.14
HDAC6-229ENST00000486665 DDNO94850 711 aaPredicted RBP15.9■□□□□ 0.14
HDAC6-229ENST00000486665 HOXA10P31260 410 aaPredicted RBP15.9■□□□□ 0.14
HDAC6-229ENST00000486665 PTPN12Q05209 780 aaKnown RBP15.9■□□□□ 0.14
HDAC6-229ENST00000486665 HDAC1Q13547 482 aaPredicted RBP15.9■□□□□ 0.14
HDAC6-229ENST00000486665 STYK1Q6J9G0 422 aa15.9■□□□□ 0.14
HDAC6-229ENST00000486665 C7orf43Q8WVR3 580 aa15.9■□□□□ 0.14
HDAC6-229ENST00000486665 TAOK3Q9H2K8 898 aa15.9■□□□□ 0.14
HDAC6-229ENST00000486665 PPP4R2Q9NY27 417 aa15.9■□□□□ 0.14
HDAC6-229ENST00000486665 PDZRN3Q9UPQ7 1066 aa15.9■□□□□ 0.14
HDAC6-229ENST00000486665 B4GALNT3Q6L9W6 998 aa15.89■□□□□ 0.13
HDAC6-229ENST00000486665 DDX46Q7L014 1031 aaKnown RBP15.89■□□□□ 0.13
HDAC6-229ENST00000486665 RPGRQ92834 1020 aaKnown RBP15.89■□□□□ 0.13
HDAC6-229ENST00000486665 CELF1Q92879 486 aaKnown RBP15.89■□□□□ 0.13
HDAC6-229ENST00000486665 CNKSR1Q969H4 720 aa15.89■□□□□ 0.13
HDAC6-229ENST00000486665 MASTLQ96GX5 879 aa15.89■□□□□ 0.13
HDAC6-229ENST00000486665 RBM17Q96I25 401 aaKnown RBP15.89■□□□□ 0.13
HDAC6-229ENST00000486665 RWDD1Q9H446 243 aaPredicted RBP15.89■□□□□ 0.13
HDAC6-229ENST00000486665 COL4A1P02462 1669 aa15.89■□□□□ 0.13
HDAC6-229ENST00000486665 HMMRO75330 724 aa15.88■□□□□ 0.13
HDAC6-229ENST00000486665 NPR1P16066 1061 aa15.88■□□□□ 0.13
HDAC6-229ENST00000486665 DPY19L2Q6NUT2 758 aa15.88■□□□□ 0.13
HDAC6-229ENST00000486665 PUS3Q9BZE2 481 aaKnown RBP15.88■□□□□ 0.13
HDAC6-229ENST00000486665 COPRSQ9NQ92 184 aa15.88■□□□□ 0.13
HDAC6-229ENST00000486665 SURF6O75683 361 aaKnown RBP15.87■□□□□ 0.13
HDAC6-229ENST00000486665 HSPA1AP0DMV8 641 aaKnown RBP15.87■□□□□ 0.13
HDAC6-229ENST00000486665 HSPA1BP0DMV9 641 aaKnown RBP15.87■□□□□ 0.13
HDAC6-229ENST00000486665 RPS8P62241 208 aaKnown RBP15.87■□□□□ 0.13
HDAC6-229ENST00000486665 TAF7LQ5H9L4 462 aa15.87■□□□□ 0.13
HDAC6-229ENST00000486665 CRAMP1Q96RY5 1269 aa15.87■□□□□ 0.13
HDAC6-229ENST00000486665 SIL1Q9H173 461 aa15.87■□□□□ 0.13
HDAC6-229ENST00000486665 DCTPP1Q9H773 170 aa15.87■□□□□ 0.13
HDAC6-229ENST00000486665 NOP58Q9Y2X3 529 aaKnown RBP15.87■□□□□ 0.13
HDAC6-229ENST00000486665 CAPN15O75808 1086 aa15.86■□□□□ 0.13
HDAC6-229ENST00000486665 GRAPQ13588 217 aa15.86■□□□□ 0.13
HDAC6-229ENST00000486665 LRRC24Q50LG9 513 aa15.86■□□□□ 0.13
HDAC6-229ENST00000486665 SLC51AQ86UW1 340 aa15.86■□□□□ 0.13
HDAC6-229ENST00000486665 GRAPLQ8TC17 118 aaPredicted RBP15.86■□□□□ 0.13
HDAC6-229ENST00000486665 CCDC136Q96JN2 1154 aa15.86■□□□□ 0.13
HDAC6-229ENST00000486665 CDC5LQ99459 802 aaKnown RBP15.86■□□□□ 0.13
HDAC6-229ENST00000486665 EXOC6BQ9Y2D4 811 aa15.86■□□□□ 0.13
HDAC6-229ENST00000486665 ZNF541Q9H0D2 1346 aa15.86■□□□□ 0.13
HDAC6-229ENST00000486665 MYH3P11055 1940 aa15.86■□□□□ 0.13
HDAC6-229ENST00000486665 SCN4AP35499 1836 aa15.85■□□□□ 0.13
HDAC6-229ENST00000486665 CHADLQ6NUI6 762 aa15.85■□□□□ 0.13
HDAC6-229ENST00000486665 LDHAL6AQ6ZMR3 332 aa15.85■□□□□ 0.13
HDAC6-229ENST00000486665 ATG9AQ7Z3C6 839 aa15.85■□□□□ 0.13
HDAC6-229ENST00000486665 ANKRD18AQ8IVF6 992 aa15.85■□□□□ 0.13
HDAC6-229ENST00000486665 RIPOR2Q9Y4F9 1068 aa15.85■□□□□ 0.13
HDAC6-229ENST00000486665 EYA2O00167 538 aa15.84■□□□□ 0.13
HDAC6-229ENST00000486665 ALDH1B1P30837 517 aa15.84■□□□□ 0.13
HDAC6-229ENST00000486665 IGHMBP2P38935 993 aaKnown RBP15.84■□□□□ 0.13
HDAC6-229ENST00000486665 G3BP1Q13283 466 aaKnown RBP eCLIP15.84■□□□□ 0.13
HDAC6-229ENST00000486665 ZNF277Q9NRM2 450 aaPredicted RBP15.84■□□□□ 0.13
HDAC6-229ENST00000486665 ADAMTSL1Q8N6G6 1762 aa15.84■□□□□ 0.13
HDAC6-229ENST00000486665 TAF1P21675 1872 aa15.84■□□□□ 0.13
HDAC6-229ENST00000486665 SNED1Q8TER0 1413 aa15.84■□□□□ 0.13
HDAC6-229ENST00000486665 COL4A5P29400 1685 aa15.83■□□□□ 0.13
HDAC6-229ENST00000486665 BBOX1O75936 387 aa15.83■□□□□ 0.12
HDAC6-229ENST00000486665 SASH1O94885 1247 aa15.83■□□□□ 0.12
HDAC6-229ENST00000486665 CCDC93Q567U6 631 aa15.83■□□□□ 0.12
HDAC6-229ENST00000486665 TNS4Q8IZW8 715 aa15.83■□□□□ 0.12
HDAC6-229ENST00000486665 MPHOSPH8Q99549 860 aa15.83■□□□□ 0.12
HDAC6-229ENST00000486665 CNNM1Q9NRU3 951 aa15.83■□□□□ 0.12
HDAC6-229ENST00000486665 BSDC1Q9NW68 430 aaPredicted RBP15.83■□□□□ 0.12
HDAC6-229ENST00000486665 MKRN1Q9UHC7 482 aaKnown RBP15.83■□□□□ 0.12
HDAC6-229ENST00000486665 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.83■□□□□ 0.12
HDAC6-229ENST00000486665 APBB1O00213 710 aa15.82■□□□□ 0.12
HDAC6-229ENST00000486665 CIAO1O76071 339 aa15.82■□□□□ 0.12
HDAC6-229ENST00000486665 SMC5Q8IY18 1101 aa15.82■□□□□ 0.12
HDAC6-229ENST00000486665 L3MBTL3Q96JM7 780 aaPredicted RBP15.82■□□□□ 0.12
HDAC6-229ENST00000486665 TAF1DQ9H5J8 278 aaPredicted RBP15.82■□□□□ 0.12
HDAC6-229ENST00000486665 MINPP1Q9UNW1 487 aa15.82■□□□□ 0.12
HDAC6-229ENST00000486665 PASKQ96RG2 1323 aa15.82■□□□□ 0.12
HDAC6-229ENST00000486665 PPEF1O14829 653 aaPredicted RBP15.81■□□□□ 0.12
HDAC6-229ENST00000486665 IL15P40933 162 aaPredicted RBP15.81■□□□□ 0.12
HDAC6-229ENST00000486665 FKBP4Q02790 459 aaKnown RBP eCLIP15.81■□□□□ 0.12
HDAC6-229ENST00000486665 OS9Q13438 667 aaPredicted RBP15.81■□□□□ 0.12
HDAC6-229ENST00000486665 SOGA3Q5TF21 947 aa15.81■□□□□ 0.12
HDAC6-229ENST00000486665 HELBQ8NG08 1087 aaPredicted RBP15.81■□□□□ 0.12
HDAC6-229ENST00000486665 GCC1Q96CN9 775 aa15.81■□□□□ 0.12
HDAC6-229ENST00000486665 CREBZFQ9NS37 354 aa15.81■□□□□ 0.12
HDAC6-229ENST00000486665 FBXO3Q9UK99 471 aa15.81■□□□□ 0.12
HDAC6-229ENST00000486665 LTBP1Q14766 1721 aa15.8■□□□□ 0.12
HDAC6-229ENST00000486665 SMARCA5O60264 1052 aaPredicted RBP15.8■□□□□ 0.12
HDAC6-229ENST00000486665 RAB11FIP3O75154 756 aa15.8■□□□□ 0.12
HDAC6-229ENST00000486665 TFCP2Q12800 502 aa15.8■□□□□ 0.12
HDAC6-229ENST00000486665 WTIPA6NIX2 430 aaPredicted RBP15.79■□□□□ 0.12
HDAC6-229ENST00000486665 TAF5LO75529 589 aa15.79■□□□□ 0.12
HDAC6-229ENST00000486665 ITGBL1O95965 494 aaPredicted RBP15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms