RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 HOXA10P31260 410 aaPredicted RBP11.22□□□□□ -0.61
COL12A1-208ENST00000486533 TCIRG1Q13488 830 aa11.22□□□□□ -0.61
COL12A1-208ENST00000486533 NLRP10Q86W26 655 aa11.22□□□□□ -0.61
COL12A1-208ENST00000486533 FTSJ3Q8IY81 847 aaKnown RBP11.22□□□□□ -0.61
COL12A1-208ENST00000486533 SYNE4Q8N205 404 aa11.22□□□□□ -0.61
COL12A1-208ENST00000486533 TRMT112Q9UI30 125 aaKnown RBP11.22□□□□□ -0.61
COL12A1-208ENST00000486533 POTECB2RU33 542 aa11.21□□□□□ -0.61
COL12A1-208ENST00000486533 ELL2O00472 640 aaPredicted RBP11.21□□□□□ -0.61
COL12A1-208ENST00000486533 ZNF853P0CG23 659 aa11.21□□□□□ -0.61
COL12A1-208ENST00000486533 HCLS1P14317 486 aaPredicted RBP11.21□□□□□ -0.61
COL12A1-208ENST00000486533 IARSP41252 1262 aaKnown RBP11.21□□□□□ -0.61
COL12A1-208ENST00000486533 HTRA3P83110 453 aa11.21□□□□□ -0.61
COL12A1-208ENST00000486533 CC2D2BQ6DHV5 1058 aa11.21□□□□□ -0.61
COL12A1-208ENST00000486533 ANKRD13DQ6ZTN6 518 aa11.21□□□□□ -0.61
COL12A1-208ENST00000486533 PLBD2Q8NHP8 589 aa11.21□□□□□ -0.61
COL12A1-208ENST00000486533 FRAT1Q92837 279 aaPredicted RBP11.21□□□□□ -0.61
COL12A1-208ENST00000486533 CRAMP1Q96RY5 1269 aa11.21□□□□□ -0.61
COL12A1-208ENST00000486533 TMX4Q9H1E5 349 aaPredicted RBP11.21□□□□□ -0.61
COL12A1-208ENST00000486533 HYPKQ9NX55 129 aa11.21□□□□□ -0.61
COL12A1-208ENST00000486533 COG6Q9Y2V7 657 aa11.21□□□□□ -0.61
COL12A1-208ENST00000486533 SH3TC1Q8TE82 1336 aa11.21□□□□□ -0.61
COL12A1-208ENST00000486533 KIF16BQ96L93 1317 aa11.21□□□□□ -0.61
COL12A1-208ENST00000486533 LAMB2P55268 1798 aa11.21□□□□□ -0.62
COL12A1-208ENST00000486533 IPO8O15397 1037 aaKnown RBP11.2□□□□□ -0.62
COL12A1-208ENST00000486533 NFKBIBQ15653 356 aa11.2□□□□□ -0.62
COL12A1-208ENST00000486533 SLC10A5Q5PT55 438 aa11.2□□□□□ -0.62
COL12A1-208ENST00000486533 JDP2Q8WYK2 163 aa11.2□□□□□ -0.62
COL12A1-208ENST00000486533 PSMD1Q99460 953 aa11.2□□□□□ -0.62
COL12A1-208ENST00000486533 OCEL1Q9H607 264 aa11.2□□□□□ -0.62
COL12A1-208ENST00000486533 DDX19BQ9UMR2 479 aa11.2□□□□□ -0.62
COL12A1-208ENST00000486533 ZNF541Q9H0D2 1346 aa11.2□□□□□ -0.62
COL12A1-208ENST00000486533 IQCA1LA6NCM1 817 aa11.2□□□□□ -0.62
COL12A1-208ENST00000486533 ATP5J2-PTCD1G3V325 749 aa11.2□□□□□ -0.62
COL12A1-208ENST00000486533 MVPQ14764 893 aaKnown RBP11.2□□□□□ -0.62
COL12A1-208ENST00000486533 SLC51AQ86UW1 340 aa11.2□□□□□ -0.62
COL12A1-208ENST00000486533 DZIP1LQ8IYY4 767 aaKnown RBP11.2□□□□□ -0.62
COL12A1-208ENST00000486533 ABCC4O15439 1325 aa11.19□□□□□ -0.62
COL12A1-208ENST00000486533 SNED1Q8TER0 1413 aa11.19□□□□□ -0.62
COL12A1-208ENST00000486533 PSEN1P49768 467 aa11.19□□□□□ -0.62
COL12A1-208ENST00000486533 GRIPAP1Q4V328 841 aa11.19□□□□□ -0.62
COL12A1-208ENST00000486533 PANK1Q8TE04 598 aa11.19□□□□□ -0.62
COL12A1-208ENST00000486533 SCN4AP35499 1836 aa11.19□□□□□ -0.62
COL12A1-208ENST00000486533 DDX46Q7L014 1031 aaKnown RBP11.18□□□□□ -0.62
COL12A1-208ENST00000486533 RIC3Q7Z5B4 369 aa11.18□□□□□ -0.62
COL12A1-208ENST00000486533 LARGE2Q8N3Y3 721 aa11.18□□□□□ -0.62
COL12A1-208ENST00000486533 DNAJC5GQ8N7S2 189 aa11.18□□□□□ -0.62
COL12A1-208ENST00000486533 C8orf58Q8NAV2 365 aa11.18□□□□□ -0.62
COL12A1-208ENST00000486533 L3MBTL3Q96JM7 780 aaPredicted RBP11.18□□□□□ -0.62
COL12A1-208ENST00000486533 ATP6V0A2Q9Y487 856 aa11.18□□□□□ -0.62
COL12A1-208ENST00000486533 FZD9O00144 591 aa11.17□□□□□ -0.62
COL12A1-208ENST00000486533 IGHDP01880 384 aa11.17□□□□□ -0.62
COL12A1-208ENST00000486533 LCE2DQ5TA82 110 aaPredicted RBP11.17□□□□□ -0.62
COL12A1-208ENST00000486533 TSR2Q969E8 191 aaKnown RBP11.17□□□□□ -0.62
COL12A1-208ENST00000486533 FAM89AQ96GI7 184 aa11.17□□□□□ -0.62
COL12A1-208ENST00000486533 ISCA1Q9BUE6 129 aa11.17□□□□□ -0.62
COL12A1-208ENST00000486533 PHAXQ9H814 394 aaKnown RBP11.17□□□□□ -0.62
COL12A1-208ENST00000486533 DDX60Q8IY21 1712 aaKnown RBP11.17□□□□□ -0.62
COL12A1-208ENST00000486533 TAF1P21675 1872 aa11.17□□□□□ -0.62
COL12A1-208ENST00000486533 COL4A5P29400 1685 aa11.17□□□□□ -0.62
COL12A1-208ENST00000486533 POTEMA6NI47 508 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 PPIP5K2O43314 1243 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 BBOX1O75936 387 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 EIF6P56537 245 aaKnown RBP11.16□□□□□ -0.62
COL12A1-208ENST00000486533 PDAP1Q13442 181 aaKnown RBP11.16□□□□□ -0.62
COL12A1-208ENST00000486533 ALDH1L2Q3SY69 923 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 EAPPQ56P03 285 aaPredicted RBP11.16□□□□□ -0.62
COL12A1-208ENST00000486533 CCDC30Q5VVM6 783 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 GPC2Q8N158 579 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 KLRG1Q96E93 195 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 CHMP4AQ9BY43 222 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 TAF1DQ9H5J8 278 aaPredicted RBP11.16□□□□□ -0.62
COL12A1-208ENST00000486533 SMC4Q9NTJ3 1288 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 HACL1Q9UJ83 578 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 GJA3Q9Y6H8 435 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 HDAC1Q13547 482 aaPredicted RBP11.16□□□□□ -0.62
COL12A1-208ENST00000486533 GRAPQ13588 217 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 AOC3Q16853 763 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 DPP8Q6V1X1 898 aaPredicted RBP11.16□□□□□ -0.62
COL12A1-208ENST00000486533 LDHDQ86WU2 507 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 NIM1KQ8IY84 436 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 TSPYL6Q8N831 410 aa11.16□□□□□ -0.62
COL12A1-208ENST00000486533 GRAPLQ8TC17 118 aaPredicted RBP11.16□□□□□ -0.62
COL12A1-208ENST00000486533 DDX58O95786 925 aaKnown RBP11.15□□□□□ -0.62
COL12A1-208ENST00000486533 EPHX2P34913 555 aa11.15□□□□□ -0.62
COL12A1-208ENST00000486533 TRIM28Q13263 835 aaKnown RBP11.15□□□□□ -0.62
COL12A1-208ENST00000486533 SP8Q8IXZ3 490 aa11.15□□□□□ -0.62
COL12A1-208ENST00000486533 SUPT20HQ8NEM7 779 aa11.15□□□□□ -0.62
COL12A1-208ENST00000486533 MYD88Q99836 296 aa11.15□□□□□ -0.62
COL12A1-208ENST00000486533 IRS4O14654 1257 aaPredicted RBP11.14□□□□□ -0.63
COL12A1-208ENST00000486533 LMOD1P29536 600 aaPredicted RBP11.14□□□□□ -0.63
COL12A1-208ENST00000486533 POTEGQ6S5H5 508 aa11.14□□□□□ -0.63
COL12A1-208ENST00000486533 MPNDQ8N594 471 aa11.14□□□□□ -0.63
COL12A1-208ENST00000486533 PDCD7Q8N8D1 485 aaKnown RBP11.14□□□□□ -0.63
COL12A1-208ENST00000486533 STK31Q9BXU1 1019 aa11.14□□□□□ -0.63
COL12A1-208ENST00000486533 ATF7IPQ6VMQ6 1270 aa11.13□□□□□ -0.63
COL12A1-208ENST00000486533 TMC4Q7Z404 712 aa11.13□□□□□ -0.63
COL12A1-208ENST00000486533 PNMA8AQ86V59 439 aaPredicted RBP11.13□□□□□ -0.63
COL12A1-208ENST00000486533 ZBTB38Q8NAP3 1195 aaPredicted RBP11.13□□□□□ -0.63
COL12A1-208ENST00000486533 LRRC37AA6NMS7 1700 aa11.12□□□□□ -0.63
COL12A1-208ENST00000486533 HSP90B1P14625 803 aaKnown RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms