RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 GRAPLQ8TC17 118 aaPredicted RBP8.99□□□□□ -0.97
VPS50-218ENST00000485994 TNRC6CQ9HCJ0 1690 aaKnown RBP8.99□□□□□ -0.97
VPS50-218ENST00000485994 WDR90Q96KV7 1748 aa8.99□□□□□ -0.97
VPS50-218ENST00000485994 ABCC4O15439 1325 aa8.99□□□□□ -0.97
VPS50-218ENST00000485994 FANCIQ9NVI1 1328 aa8.99□□□□□ -0.97
VPS50-218ENST00000485994 IRS4O14654 1257 aaPredicted RBP8.98□□□□□ -0.97
VPS50-218ENST00000485994 PPEF1O14829 653 aaPredicted RBP8.98□□□□□ -0.97
VPS50-218ENST00000485994 PDE8AO60658 829 aa8.98□□□□□ -0.97
VPS50-218ENST00000485994 OLFM4Q6UX06 510 aa8.98□□□□□ -0.97
VPS50-218ENST00000485994 C16orf71Q8IYS4 520 aaPredicted RBP8.98□□□□□ -0.97
VPS50-218ENST00000485994 JDP2Q8WYK2 163 aa8.98□□□□□ -0.97
VPS50-218ENST00000485994 ZNF277Q9NRM2 450 aaPredicted RBP8.98□□□□□ -0.97
VPS50-218ENST00000485994 CWC25Q9NXE8 425 aaPredicted RBP8.98□□□□□ -0.97
VPS50-218ENST00000485994 LAMB2P55268 1798 aa8.98□□□□□ -0.97
VPS50-218ENST00000485994 CDHR2Q9BYE9 1310 aa8.98□□□□□ -0.97
VPS50-218ENST00000485994 SCN4AP35499 1836 aa8.98□□□□□ -0.97
VPS50-218ENST00000485994 CEP350Q5VT06 3117 aa8.97□□□□□ -0.97
VPS50-218ENST00000485994 H7C1W4 665 aa8.97□□□□□ -0.97
VPS50-218ENST00000485994 DDNO94850 711 aaPredicted RBP8.97□□□□□ -0.97
VPS50-218ENST00000485994 IGKV5-2P06315 115 aa8.97□□□□□ -0.97
VPS50-218ENST00000485994 RPS8P62241 208 aaKnown RBP8.97□□□□□ -0.97
VPS50-218ENST00000485994 EXOSC9Q06265 439 aaKnown RBP8.97□□□□□ -0.97
VPS50-218ENST00000485994 NEXNQ0ZGT2 675 aa8.97□□□□□ -0.97
VPS50-218ENST00000485994 FLIIQ13045 1269 aa8.97□□□□□ -0.97
VPS50-218ENST00000485994 GPC2Q8N158 579 aa8.97□□□□□ -0.97
VPS50-218ENST00000485994 MPNDQ8N594 471 aa8.97□□□□□ -0.97
VPS50-218ENST00000485994 SMC1BQ8NDV3 1235 aa8.97□□□□□ -0.97
VPS50-218ENST00000485994 MYD88Q99836 296 aa8.97□□□□□ -0.97
VPS50-218ENST00000485994 MAP3K2Q9Y2U5 619 aa8.97□□□□□ -0.97
VPS50-218ENST00000485994 SENP3-EIF4A1A0A087X0R7 540 aa8.96□□□□□ -0.98
VPS50-218ENST00000485994 IQCA1LA6NCM1 817 aa8.96□□□□□ -0.98
VPS50-218ENST00000485994 APLP1P51693 650 aa8.96□□□□□ -0.98
VPS50-218ENST00000485994 G2E3Q7L622 706 aa8.96□□□□□ -0.98
VPS50-218ENST00000485994 TRMT2AQ8IZ69 625 aaKnown RBP8.96□□□□□ -0.98
VPS50-218ENST00000485994 ZNF428Q96B54 188 aa8.96□□□□□ -0.98
VPS50-218ENST00000485994 PLA2G12BQ9BX93 195 aa8.96□□□□□ -0.98
VPS50-218ENST00000485994 PODXL2Q9NZ53 605 aa8.96□□□□□ -0.98
VPS50-218ENST00000485994 SALL2Q9Y467 1007 aaPredicted RBP8.96□□□□□ -0.98
VPS50-218ENST00000485994 TIAM2Q8IVF5 1701 aa8.96□□□□□ -0.98
VPS50-218ENST00000485994 DDX60Q8IY21 1712 aaKnown RBP8.96□□□□□ -0.98
VPS50-218ENST00000485994 TAF1P21675 1872 aa8.96□□□□□ -0.98
VPS50-218ENST00000485994 NEURL1BA8MQ27 555 aa8.95□□□□□ -0.98
VPS50-218ENST00000485994 E9PSI1 815 aa8.95□□□□□ -0.98
VPS50-218ENST00000485994 EIF6P56537 245 aaKnown RBP8.95□□□□□ -0.98
VPS50-218ENST00000485994 KIAA2012Q0VF49 1180 aa8.95□□□□□ -0.98
VPS50-218ENST00000485994 CCDC152Q4G0S7 254 aa8.95□□□□□ -0.98
VPS50-218ENST00000485994 DPP8Q6V1X1 898 aaPredicted RBP8.95□□□□□ -0.98
VPS50-218ENST00000485994 LARGE2Q8N3Y3 721 aa8.95□□□□□ -0.98
VPS50-218ENST00000485994 LINS1Q8NG48 757 aa8.95□□□□□ -0.98
VPS50-218ENST00000485994 DNAAF4Q8WXU2 420 aa8.95□□□□□ -0.98
VPS50-218ENST00000485994 CSF1RP07333 972 aa8.94□□□□□ -0.98
VPS50-218ENST00000485994 SLFN5Q08AF3 891 aa8.94□□□□□ -0.98
VPS50-218ENST00000485994 GCKRQ14397 625 aa8.94□□□□□ -0.98
VPS50-218ENST00000485994 PNMA8AQ86V59 439 aaPredicted RBP8.94□□□□□ -0.98
VPS50-218ENST00000485994 DNAJC5GQ8N7S2 189 aa8.94□□□□□ -0.98
VPS50-218ENST00000485994 TTLL11Q8NHH1 800 aa8.94□□□□□ -0.98
VPS50-218ENST00000485994 CELF1Q92879 486 aaKnown RBP8.94□□□□□ -0.98
VPS50-218ENST00000485994 TAF1DQ9H5J8 278 aaPredicted RBP8.94□□□□□ -0.98
VPS50-218ENST00000485994 ZNRF3Q9ULT6 936 aa8.94□□□□□ -0.98
VPS50-218ENST00000485994 MYH3P11055 1940 aa8.93□□□□□ -0.98
VPS50-218ENST00000485994 TCERG1O14776 1098 aaKnown RBP8.93□□□□□ -0.98
VPS50-218ENST00000485994 CT47B1P0C2W7 299 aaPredicted RBP8.93□□□□□ -0.98
VPS50-218ENST00000485994 CASP7P55210 303 aa8.93□□□□□ -0.98
VPS50-218ENST00000485994 FKBP5Q13451 457 aaPredicted RBP8.93□□□□□ -0.98
VPS50-218ENST00000485994 RTL5Q5HYW3 569 aaPredicted RBP8.93□□□□□ -0.98
VPS50-218ENST00000485994 BEND3Q5T5X7 828 aa8.93□□□□□ -0.98
VPS50-218ENST00000485994 NIM1KQ8IY84 436 aa8.93□□□□□ -0.98
VPS50-218ENST00000485994 BSDC1Q9NW68 430 aaPredicted RBP8.93□□□□□ -0.98
VPS50-218ENST00000485994 HACL1Q9UJ83 578 aa8.93□□□□□ -0.98
VPS50-218ENST00000485994 RTL9Q8NET4 1388 aa8.93□□□□□ -0.98
VPS50-218ENST00000485994 LRRC37AA6NMS7 1700 aa8.92□□□□□ -0.98
VPS50-218ENST00000485994 ZNF541Q9H0D2 1346 aa8.92□□□□□ -0.98
VPS50-218ENST00000485994 PPIP5K2O43314 1243 aa8.92□□□□□ -0.98
VPS50-218ENST00000485994 MKRN3Q13064 507 aaKnown RBP8.92□□□□□ -0.98
VPS50-218ENST00000485994 TNIP1Q15025 636 aa8.92□□□□□ -0.98
VPS50-218ENST00000485994 WASHC4Q2M389 1173 aa8.92□□□□□ -0.98
VPS50-218ENST00000485994 CWF19L2Q2TBE0 894 aaKnown RBP8.92□□□□□ -0.98
VPS50-218ENST00000485994 LDHDQ86WU2 507 aa8.92□□□□□ -0.98
VPS50-218ENST00000485994 EYA3Q99504 573 aa8.92□□□□□ -0.98
VPS50-218ENST00000485994 SEC31BQ9NQW1 1179 aa8.92□□□□□ -0.98
VPS50-218ENST00000485994 POLLQ9UGP5 575 aa8.92□□□□□ -0.98
VPS50-218ENST00000485994 NSFL1CQ9UNZ2 370 aaKnown RBP8.92□□□□□ -0.98
VPS50-218ENST00000485994 ALDH1L1O75891 902 aa8.91□□□□□ -0.98
VPS50-218ENST00000485994 EPHX2P34913 555 aa8.91□□□□□ -0.98
VPS50-218ENST00000485994 BRPF1P55201 1214 aaPredicted RBP8.91□□□□□ -0.98
VPS50-218ENST00000485994 CTSWP56202 376 aa8.91□□□□□ -0.98
VPS50-218ENST00000485994 CXCL9Q07325 125 aa8.91□□□□□ -0.98
VPS50-218ENST00000485994 AOC3Q16853 763 aa8.91□□□□□ -0.98
VPS50-218ENST00000485994 ALDH1L2Q3SY69 923 aa8.91□□□□□ -0.98
VPS50-218ENST00000485994 USP50Q70EL3 339 aaPredicted RBP8.91□□□□□ -0.98
VPS50-218ENST00000485994 ANKRD18AQ8IVF6 992 aa8.91□□□□□ -0.98
VPS50-218ENST00000485994 TBC1D16Q8TBP0 767 aa8.91□□□□□ -0.98
VPS50-218ENST00000485994 DPF2Q92785 391 aa8.91□□□□□ -0.98
VPS50-218ENST00000485994 CDC5LQ99459 802 aaKnown RBP8.91□□□□□ -0.98
VPS50-218ENST00000485994 COL4A5P29400 1685 aa8.91□□□□□ -0.98
VPS50-218ENST00000485994 PTPRCP08575 1304 aa8.9□□□□□ -0.98
VPS50-218ENST00000485994 ITGBL1O95965 494 aaPredicted RBP8.9□□□□□ -0.98
VPS50-218ENST00000485994 HOXB3P14651 431 aaPredicted RBP8.9□□□□□ -0.98
VPS50-218ENST00000485994 ATP2B4P23634 1241 aa8.9□□□□□ -0.98
VPS50-218ENST00000485994 SCNN1DP51172 638 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms