RNA–Protein interactions for RNA: ENST00000485780.1

SHROOM3-207, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 531 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-207ENST00000485780 SUPT16HQ9Y5B9 1047 aaKnown RBP11.68□□□□□ -0.54
SHROOM3-207ENST00000485780 DICER1Q9UPY3 1922 aaKnown RBP11.68□□□□□ -0.54
SHROOM3-207ENST00000485780 BBOX1O75936 387 aa11.67□□□□□ -0.54
SHROOM3-207ENST00000485780 GNAI2P04899 355 aa11.67□□□□□ -0.54
SHROOM3-207ENST00000485780 ITGA6P23229 1130 aa11.67□□□□□ -0.54
SHROOM3-207ENST00000485780 RFX5P48382 616 aaPredicted RBP11.67□□□□□ -0.54
SHROOM3-207ENST00000485780 FSTL1Q12841 308 aa11.67□□□□□ -0.54
SHROOM3-207ENST00000485780 OLFM4Q6UX06 510 aa11.67□□□□□ -0.54
SHROOM3-207ENST00000485780 CDC5LQ99459 802 aaKnown RBP11.67□□□□□ -0.54
SHROOM3-207ENST00000485780 CHMP4BQ9H444 224 aaKnown RBP11.67□□□□□ -0.54
SHROOM3-207ENST00000485780 ZNF277Q9NRM2 450 aaPredicted RBP11.67□□□□□ -0.54
SHROOM3-207ENST00000485780 CCDC88AQ3V6T2 1871 aa11.67□□□□□ -0.54
SHROOM3-207ENST00000485780 RPS8P62241 208 aaKnown RBP11.66□□□□□ -0.54
SHROOM3-207ENST00000485780 GRIPAP1Q4V328 841 aa11.66□□□□□ -0.54
SHROOM3-207ENST00000485780 SMC1BQ8NDV3 1235 aa11.66□□□□□ -0.54
SHROOM3-207ENST00000485780 ATP6V0A2Q9Y487 856 aa11.66□□□□□ -0.54
SHROOM3-207ENST00000485780 ANKRD18BA2A2Z9 1011 aa11.65□□□□□ -0.54
SHROOM3-207ENST00000485780 IARSP41252 1262 aaKnown RBP11.65□□□□□ -0.54
SHROOM3-207ENST00000485780 APLP1P51693 650 aa11.65□□□□□ -0.54
SHROOM3-207ENST00000485780 IFIT5Q13325 482 aaKnown RBP11.65□□□□□ -0.54
SHROOM3-207ENST00000485780 ANKRD18AQ8IVF6 992 aa11.65□□□□□ -0.54
SHROOM3-207ENST00000485780 SP8Q8IXZ3 490 aa11.65□□□□□ -0.54
SHROOM3-207ENST00000485780 JDP2Q8WYK2 163 aa11.65□□□□□ -0.54
SHROOM3-207ENST00000485780 CCDC85AQ96PX6 553 aaPredicted RBP11.65□□□□□ -0.54
SHROOM3-207ENST00000485780 PSMD1Q99460 953 aa11.65□□□□□ -0.54
SHROOM3-207ENST00000485780 BSDC1Q9NW68 430 aaPredicted RBP11.65□□□□□ -0.54
SHROOM3-207ENST00000485780 ARAP2Q8WZ64 1704 aa11.64□□□□□ -0.55
SHROOM3-207ENST00000485780 DDNO94850 711 aaPredicted RBP11.64□□□□□ -0.55
SHROOM3-207ENST00000485780 CENPBP07199 599 aaPredicted RBP11.64□□□□□ -0.55
SHROOM3-207ENST00000485780 AAMPQ13685 434 aa11.64□□□□□ -0.55
SHROOM3-207ENST00000485780 POLA2Q14181 598 aa11.64□□□□□ -0.55
SHROOM3-207ENST00000485780 CCDC57Q2TAC2 916 aa11.64□□□□□ -0.55
SHROOM3-207ENST00000485780 CEP85Q6P2H3 762 aa11.64□□□□□ -0.55
SHROOM3-207ENST00000485780 SSH3Q8TE77 659 aa11.64□□□□□ -0.55
SHROOM3-207ENST00000485780 FBXO3Q9UK99 471 aa11.64□□□□□ -0.55
SHROOM3-207ENST00000485780 PNMA6EA0A0J9YXQ4 647 aa11.63□□□□□ -0.55
SHROOM3-207ENST00000485780 IQCA1LA6NCM1 817 aa11.63□□□□□ -0.55
SHROOM3-207ENST00000485780 IGHMBP2P38935 993 aaKnown RBP11.63□□□□□ -0.55
SHROOM3-207ENST00000485780 ATP8B2P98198 1209 aa11.63□□□□□ -0.55
SHROOM3-207ENST00000485780 PTPN12Q05209 780 aaKnown RBP11.63□□□□□ -0.55
SHROOM3-207ENST00000485780 SLC51AQ86UW1 340 aa11.63□□□□□ -0.55
SHROOM3-207ENST00000485780 CRBNQ96SW2 442 aa11.63□□□□□ -0.55
SHROOM3-207ENST00000485780 RTFDC1Q9BY42 306 aaPredicted RBP11.63□□□□□ -0.55
SHROOM3-207ENST00000485780 C1orf115Q9H7X2 142 aa11.63□□□□□ -0.55
SHROOM3-207ENST00000485780 COPRSQ9NQ92 184 aa11.63□□□□□ -0.55
SHROOM3-207ENST00000485780 PODXL2Q9NZ53 605 aa11.63□□□□□ -0.55
SHROOM3-207ENST00000485780 WDR90Q96KV7 1748 aa11.63□□□□□ -0.55
SHROOM3-207ENST00000485780 SRGAP3O43295 1099 aa11.62□□□□□ -0.55
SHROOM3-207ENST00000485780 EIF6P56537 245 aaKnown RBP11.62□□□□□ -0.55
SHROOM3-207ENST00000485780 RPAP2Q8IXW5 612 aaPredicted RBP11.62□□□□□ -0.55
SHROOM3-207ENST00000485780 LARGE2Q8N3Y3 721 aa11.62□□□□□ -0.55
SHROOM3-207ENST00000485780 CHMP3Q9Y3E7 222 aa11.62□□□□□ -0.55
SHROOM3-207ENST00000485780 PSME4Q14997 1843 aa11.62□□□□□ -0.55
SHROOM3-207ENST00000485780 ZNF541Q9H0D2 1346 aa11.61□□□□□ -0.55
SHROOM3-207ENST00000485780 ZNF646O15015 1829 aaPredicted RBP11.61□□□□□ -0.55
SHROOM3-207ENST00000485780 PPIP5K2O43314 1243 aa11.61□□□□□ -0.55
SHROOM3-207ENST00000485780 CIAO1O76071 339 aa11.61□□□□□ -0.55
SHROOM3-207ENST00000485780 DPP8Q6V1X1 898 aaPredicted RBP11.61□□□□□ -0.55
SHROOM3-207ENST00000485780 SIRT2Q8IXJ6 389 aa11.61□□□□□ -0.55
SHROOM3-207ENST00000485780 NIM1KQ8IY84 436 aa11.61□□□□□ -0.55
SHROOM3-207ENST00000485780 SUPT20HQ8NEM7 779 aa11.61□□□□□ -0.55
SHROOM3-207ENST00000485780 ZNF594Q96JF6 807 aaPredicted RBP11.61□□□□□ -0.55
SHROOM3-207ENST00000485780 MINPP1Q9UNW1 487 aa11.61□□□□□ -0.55
SHROOM3-207ENST00000485780 RIPOR2Q9Y4F9 1068 aa11.61□□□□□ -0.55
SHROOM3-207ENST00000485780 COL4A5P29400 1685 aa11.6□□□□□ -0.55
SHROOM3-207ENST00000485780 POTECB2RU33 542 aa11.6□□□□□ -0.55
SHROOM3-207ENST00000485780 EYA2O00167 538 aa11.6□□□□□ -0.55
SHROOM3-207ENST00000485780 LDHAL6AQ6ZMR3 332 aa11.6□□□□□ -0.55
SHROOM3-207ENST00000485780 ATG9AQ7Z3C6 839 aa11.6□□□□□ -0.55
SHROOM3-207ENST00000485780 MPNDQ8N594 471 aa11.6□□□□□ -0.55
SHROOM3-207ENST00000485780 VGLL2Q8N8G2 317 aa11.6□□□□□ -0.55
SHROOM3-207ENST00000485780 KLHDC4Q8TBB5 520 aa11.6□□□□□ -0.55
SHROOM3-207ENST00000485780 MPHOSPH8Q99549 860 aa11.6□□□□□ -0.55
SHROOM3-207ENST00000485780 NOP58Q9Y2X3 529 aaKnown RBP11.6□□□□□ -0.55
SHROOM3-207ENST00000485780 GJA3Q9Y6H8 435 aa11.6□□□□□ -0.55
SHROOM3-207ENST00000485780 XDHP47989 1333 aa11.6□□□□□ -0.55
SHROOM3-207ENST00000485780 FZD9O00144 591 aa11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 GPSM2P81274 684 aa11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 CHRNDQ07001 517 aa11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 AOC3Q16853 763 aa11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 EAPPQ56P03 285 aaPredicted RBP11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 TAF7LQ5H9L4 462 aa11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 GPC2Q8N158 579 aa11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 EXOC6Q8TAG9 804 aa11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 L3MBTL3Q96JM7 780 aaPredicted RBP11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 PUS3Q9BZE2 481 aaKnown RBP11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 VPS33BQ9H267 617 aa11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 HACL1Q9UJ83 578 aa11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 MROH5Q6ZUA9 1318 aa11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 IRS2Q9Y4H2 1338 aa11.59□□□□□ -0.55
SHROOM3-207ENST00000485780 MED23Q9ULK4 1368 aa11.58□□□□□ -0.56
SHROOM3-207ENST00000485780 LMOD1P29536 600 aaPredicted RBP11.58□□□□□ -0.56
SHROOM3-207ENST00000485780 LRRC24Q50LG9 513 aa11.58□□□□□ -0.56
SHROOM3-207ENST00000485780 CHADLQ6NUI6 762 aa11.58□□□□□ -0.56
SHROOM3-207ENST00000485780 ANKRD2Q9GZV1 360 aa11.58□□□□□ -0.56
SHROOM3-207ENST00000485780 TAF1DQ9H5J8 278 aaPredicted RBP11.58□□□□□ -0.56
SHROOM3-207ENST00000485780 POLLQ9UGP5 575 aa11.58□□□□□ -0.56
SHROOM3-207ENST00000485780 PA2G4Q9UQ80 394 aaKnown RBP11.58□□□□□ -0.56
SHROOM3-207ENST00000485780 CLEC11AQ9Y240 323 aa11.58□□□□□ -0.56
SHROOM3-207ENST00000485780 PCDHB15Q9Y5E8 787 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms